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Update inference_seg.py
Browse files- inference_seg.py +47 -47
inference_seg.py
CHANGED
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@@ -1,66 +1,24 @@
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# import torch
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# import numpy as np
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# from huggingface_hub import hf_hub_download
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# from segmentation import SegmentationModule
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# MODEL = None
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# DEVICE = torch.device("cpu")
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# def load_model(use_box=False):
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# global MODEL, DEVICE
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# MODEL = CountingModule(use_box=use_box)
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# ckpt_path = hf_hub_download(
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# repo_id="Shengxiao0709/cellsegmodel",
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# filename="microscopy_matching_seg.pth",
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# token=None,
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# force_download=False
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# )
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# MODEL.load_state_dict(torch.load(ckpt_path, map_location="cpu"), strict=False)
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# MODEL.eval()
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# DEVICE = torch.device("cpu")
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# return MODEL, DEVICE
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# @torch.no_grad()
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# def run(model, img_path, box=None, device="cpu"):
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# output = model(img_path, box=box)
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# mask = output["pred"]
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# mask = (mask > 0).astype(np.uint8)
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# return mask
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import os
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import torch
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import numpy as np
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from huggingface_hub import hf_hub_download
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from segmentation import SegmentationModule
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MODEL = None
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DEVICE = torch.device("cpu")
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def load_model(use_box=False):
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global MODEL, DEVICE
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# === 优化1: 使用 /data 缓存模型,避免写入 .cache ===
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cache_dir = "/data/cellseg_model_cache"
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os.makedirs(cache_dir, exist_ok=True)
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ckpt_path = hf_hub_download(
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repo_id="Shengxiao0709/cellsegmodel",
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filename="microscopy_matching_seg.pth",
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token=None,
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local_dir_use_symlinks=False, # ✅ 避免软链接问题
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force_download=False # ✅ 已存在时不重复下载
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)
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# === 优化2: 加载模型 ===
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MODEL = SegmentationModule(use_box=use_box)
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state_dict = torch.load(ckpt_path, map_location="cpu")
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MODEL.load_state_dict(state_dict, strict=False)
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MODEL.eval()
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DEVICE = torch.device("cpu")
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print(f"✅ Model loaded from {ckpt_path}")
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return MODEL, DEVICE
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@@ -69,4 +27,46 @@ def run(model, img_path, box=None, device="cpu"):
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output = model(img_path, box=box)
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mask = output["pred"]
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mask = (mask > 0).astype(np.uint8)
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return mask
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import torch
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import numpy as np
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from huggingface_hub import hf_hub_download
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from segmentation import SegmentationModule
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MODEL = None
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DEVICE = torch.device("cpu")
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def load_model(use_box=False):
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global MODEL, DEVICE
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MODEL = CountingModule(use_box=use_box)
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ckpt_path = hf_hub_download(
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repo_id="Shengxiao0709/cellsegmodel",
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filename="microscopy_matching_seg.pth",
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token=None,
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force_download=False
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)
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MODEL.load_state_dict(torch.load(ckpt_path, map_location="cpu"), strict=False)
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MODEL.eval()
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DEVICE = torch.device("cpu")
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return MODEL, DEVICE
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output = model(img_path, box=box)
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mask = output["pred"]
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mask = (mask > 0).astype(np.uint8)
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return mask
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# import os
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+
# import torch
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+
# import numpy as np
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+
# from huggingface_hub import hf_hub_download
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+
# from segmentation import SegmentationModule
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+
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# MODEL = None
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# DEVICE = torch.device("cpu")
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# def load_model(use_box=False):
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# global MODEL, DEVICE
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# # === 优化1: 使用 /data 缓存模型,避免写入 .cache ===
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# cache_dir = "/data/cellseg_model_cache"
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# os.makedirs(cache_dir, exist_ok=True)
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# ckpt_path = hf_hub_download(
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# repo_id="Shengxiao0709/cellsegmodel",
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# filename="microscopy_matching_seg.pth",
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# token=None,
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# local_dir=cache_dir, # ✅ 下载到 /data
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# local_dir_use_symlinks=False, # ✅ 避免软链接问题
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# force_download=False # ✅ 已存在时不重复下载
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# )
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+
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# # === 优化2: 加载模型 ===
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# MODEL = SegmentationModule(use_box=use_box)
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# state_dict = torch.load(ckpt_path, map_location="cpu")
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# MODEL.load_state_dict(state_dict, strict=False)
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# MODEL.eval()
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# DEVICE = torch.device("cpu")
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# print(f"✅ Model loaded from {ckpt_path}")
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# return MODEL, DEVICE
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+
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+
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# @torch.no_grad()
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# def run(model, img_path, box=None, device="cpu"):
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# output = model(img_path, box=box)
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# mask = output["pred"]
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# mask = (mask > 0).astype(np.uint8)
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# return mask
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