Upload 3 files
Browse files- README.md +23 -5
- app.py +264 -0
- requirements.txt +4 -0
README.md
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---
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title:
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emoji:
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colorFrom:
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colorTo: purple
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sdk: gradio
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sdk_version: 6.8.0
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app_file: app.py
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pinned: false
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license: mit
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short_description:
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---
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-
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---
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title: PCA DimReduction 3D2D
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emoji: π
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colorFrom: blue
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colorTo: purple
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sdk: gradio
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sdk_version: 6.8.0
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app_file: app.py
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pinned: false
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license: mit
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short_description: PCA tool for 3D to 2D dimensionality reduction.
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---
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# PCA Visualizer - 3D to 2D Dimensionality Reduction
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Interactive Principal Component Analysis tool with full step-by-step mathematical output.
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## Features
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- Enter 6+ 3D points and instantly see all PCA steps
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- Covariance matrix, eigenvalues, eigenvectors shown clearly
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- 3D scatter plot of original points
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- 2D projection plot
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- Variance explained bar and cumulative charts
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## Usage
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Enter points one per line as X Y Z, for example:
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```
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1 2 3
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4 5 6
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7 8 9
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```
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Click Run PCA to compute all steps.
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app.py
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import gradio as gr
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import numpy as np
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import matplotlib
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matplotlib.use('Agg')
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import matplotlib.pyplot as plt
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COLORS = ['#00d4ff','#7c3aed','#f59e0b','#10b981','#f43f5e',
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'#a78bfa','#34d399','#fb923c','#60a5fa','#e879f9']
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def parse_points(text):
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points, errors = [], []
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for i, line in enumerate([l.strip() for l in text.strip().split('\n') if l.strip()]):
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try:
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vals = [float(x) for x in line.replace(',', ' ').split()]
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if len(vals) != 3:
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errors.append(f"Line {i+1}: need 3 values, got {len(vals)}")
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else:
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points.append(vals)
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except:
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errors.append(f"Line {i+1}: invalid numbers")
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return (np.array(points) if points else None), errors
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def run_pca(points_text):
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points, errors = parse_points(points_text)
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if errors:
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return "β Input Errors:\n" + "\n".join(errors), None, None, None
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if points is None or len(points) < 6:
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n = len(points) if points is not None else 0
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return f"β Need at least 6 points (you entered {n})", None, None, None
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n = len(points)
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mean = np.mean(points, axis=0)
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centered = points - mean
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cov = np.cov(centered.T)
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eigenvalues, eigenvectors = np.linalg.eigh(cov)
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idx = np.argsort(eigenvalues)[::-1]
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eigenvalues = eigenvalues[idx]
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eigenvectors = eigenvectors[:, idx]
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W = eigenvectors[:, :2]
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projected = centered @ W
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var_exp = eigenvalues / np.sum(eigenvalues) * 100
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# ββ Build output text
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sep = "β" * 58
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thin = "β" * 58
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L = []
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L.append(sep)
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L.append(" PCA Β· 3D β 2D DIMENSIONALITY REDUCTION")
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L.append(sep)
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L.append("\n βΈ STEP 1 | INPUT POINTS")
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L.append(" " + thin)
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L.append(f" {'#':<6} {'X':>10} {'Y':>10} {'Z':>10}")
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L.append(" " + thin)
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for i, p in enumerate(points):
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L.append(f" P{i+1:<5} {p[0]:>10.4f} {p[1]:>10.4f} {p[2]:>10.4f}")
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L.append("\n βΈ STEP 2 | MEAN & CENTERED POINTS")
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L.append(" " + thin)
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L.append(f" Mean ΞΌ = ({mean[0]:.4f}, {mean[1]:.4f}, {mean[2]:.4f})\n")
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L.append(f" {'#':<6} {'X-ΞΌx':>10} {'Y-ΞΌy':>10} {'Z-ΞΌz':>10}")
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L.append(" " + thin)
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for i, p in enumerate(centered):
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L.append(f" P{i+1:<5} {p[0]:>10.4f} {p[1]:>10.4f} {p[2]:>10.4f}")
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L.append("\n βΈ STEP 3 | COVARIANCE MATRIX (3Γ3)")
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L.append(" " + thin)
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L.append(f" {'':>6} {'X':>10} {'Y':>10} {'Z':>10}")
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for i, lbl in enumerate(['X','Y','Z']):
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L.append(f" {lbl:<6}" + "".join(f"{cov[i,j]:>10.4f}" for j in range(3)))
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L.append("\n βΈ STEP 4 | EIGENVALUES & EIGENVECTORS")
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L.append(" " + thin)
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for i in range(3):
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ev = eigenvectors[:, i]
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L.append(f" Ξ»{i+1} = {eigenvalues[i]:>10.6f} | v{i+1} = [{ev[0]:>8.4f}, {ev[1]:>8.4f}, {ev[2]:>8.4f}]")
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L.append("\n βΈ STEP 5 | TOP 2 PRINCIPAL COMPONENTS")
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L.append(" " + thin)
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L.append(f" PC1 Ξ»={eigenvalues[0]:.4f} β [{W[0,0]:>7.4f}, {W[1,0]:>7.4f}, {W[2,0]:>7.4f}]")
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L.append(f" PC2 Ξ»={eigenvalues[1]:.4f} β [{W[0,1]:>7.4f}, {W[1,1]:>7.4f}, {W[2,1]:>7.4f}]")
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L.append(f"\n Variance: PC1={var_exp[0]:.2f}% PC2={var_exp[1]:.2f}% Total={var_exp[0]+var_exp[1]:.2f}%")
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L.append("\n βΈ STEP 6 | PROJECTION MATRIX W (3Γ2)")
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L.append(" " + thin)
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L.append(f" {'':>4} {'PC1':>10} {'PC2':>10}")
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for i, lbl in enumerate(['x','y','z']):
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L.append(f" {lbl:<4} {W[i,0]:>10.4f} {W[i,1]:>10.4f}")
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L.append("\n βΈ STEP 7 | REDUCED 2D COORDINATES")
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L.append(" " + thin)
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L.append(f" {'#':<6} {'3D (X, Y, Z)':<32} 2D (PC1, PC2)")
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L.append(" " + thin)
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for i in range(n):
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orig = f"({points[i,0]:.2f}, {points[i,1]:.2f}, {points[i,2]:.2f})"
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red = f"({projected[i,0]:.4f}, {projected[i,1]:.4f})"
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L.append(f" P{i+1:<5} {orig:<32} {red}")
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L.append("\n" + sep)
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output_text = "\n".join(L)
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# ββ Plots
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fig1 = make_3d_plot(points, mean)
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fig2 = make_2d_plot(projected, var_exp)
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fig3 = make_var_plot(var_exp)
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return output_text, fig1, fig2, fig3
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| 110 |
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def _style_ax(ax):
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ax.set_facecolor('#111827')
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for sp in ax.spines.values():
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sp.set_color('#1e293b')
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ax.tick_params(colors='#94a3b8', labelsize=8)
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def make_3d_plot(points, mean):
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fig = plt.figure(figsize=(6, 5), facecolor='#0a0e1a')
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ax = fig.add_subplot(111, projection='3d')
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| 120 |
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ax.set_facecolor('#111827')
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for pane in [ax.xaxis.pane, ax.yaxis.pane, ax.zaxis.pane]:
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pane.fill = False
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pane.set_edgecolor('#1e293b')
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| 124 |
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ax.tick_params(colors='#94a3b8', labelsize=7)
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ax.xaxis.label.set_color('#94a3b8')
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| 126 |
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ax.yaxis.label.set_color('#94a3b8')
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| 127 |
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ax.zaxis.label.set_color('#94a3b8')
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| 128 |
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ax.set_xlabel('X'); ax.set_ylabel('Y'); ax.set_zlabel('Z')
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| 129 |
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for i, p in enumerate(points):
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| 130 |
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c = COLORS[i % len(COLORS)]
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| 131 |
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ax.scatter(*p, color=c, s=80, edgecolors='white', linewidths=0.5, zorder=5)
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| 132 |
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ax.text(p[0], p[1], p[2], f' P{i+1}', color=c, fontsize=7.5, fontweight='bold')
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| 133 |
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ax.scatter(*mean, color='#f59e0b', s=160, marker='*', edgecolors='white', linewidths=0.8, zorder=10)
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| 134 |
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ax.set_title('Original 3D Points', color='#e2e8f0', fontsize=11, fontweight='bold', pad=10)
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| 135 |
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fig.tight_layout()
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| 136 |
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return fig
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| 137 |
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| 138 |
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| 139 |
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def make_2d_plot(projected, var_exp):
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| 140 |
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fig, ax = plt.subplots(figsize=(6, 5), facecolor='#0a0e1a')
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_style_ax(ax)
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| 142 |
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ax.axhline(0, color='#1e293b', lw=1); ax.axvline(0, color='#1e293b', lw=1)
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| 143 |
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ax.grid(True, color='#1e293b', lw=0.5, alpha=0.7)
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| 144 |
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ax.set_xlabel(f'PC1 ({var_exp[0]:.1f}%)', color='#00d4ff', fontsize=10)
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| 145 |
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ax.set_ylabel(f'PC2 ({var_exp[1]:.1f}%)', color='#7c3aed', fontsize=10)
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| 146 |
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for i, p in enumerate(projected):
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c = COLORS[i % len(COLORS)]
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ax.scatter(*p, color=c, s=100, edgecolors='white', linewidths=0.6, zorder=5)
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| 149 |
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ax.annotate(f'P{i+1}', p, xytext=(7,4), textcoords='offset points',
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color=c, fontsize=8.5, fontweight='bold')
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| 151 |
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ax.set_title('2D Projection (PCA)', color='#e2e8f0', fontsize=11, fontweight='bold', pad=10)
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| 152 |
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fig.tight_layout()
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| 153 |
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return fig
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| 154 |
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| 155 |
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| 156 |
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def make_var_plot(var_exp):
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| 157 |
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fig, (ax1, ax2) = plt.subplots(1, 2, figsize=(8, 4), facecolor='#0a0e1a')
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| 158 |
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labels = ['PC1','PC2','PC3']
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| 159 |
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bar_colors = ['#00d4ff','#7c3aed','#f59e0b']
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| 160 |
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_style_ax(ax1)
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| 162 |
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bars = ax1.bar(labels, var_exp, color=bar_colors, edgecolor='#0a0e1a', linewidth=1.5, width=0.5)
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| 163 |
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for bar, val in zip(bars, var_exp):
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| 164 |
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ax1.text(bar.get_x()+bar.get_width()/2, bar.get_height()+0.8,
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f'{val:.1f}%', ha='center', color='#e2e8f0', fontsize=9, fontweight='bold')
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| 166 |
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ax1.set_title('Variance per PC', color='#e2e8f0', fontsize=10, fontweight='bold', pad=8)
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| 167 |
+
ax1.set_ylabel('Variance (%)', color='#64748b', fontsize=9)
|
| 168 |
+
ax1.set_ylim(0, max(var_exp)*1.2)
|
| 169 |
+
|
| 170 |
+
_style_ax(ax2)
|
| 171 |
+
cum = np.cumsum(var_exp)
|
| 172 |
+
ax2.plot(labels, cum, 'o-', color='#10b981', lw=2.5, markersize=8,
|
| 173 |
+
markerfacecolor='#0a0e1a', markeredgecolor='#10b981', markeredgewidth=2.5)
|
| 174 |
+
ax2.fill_between(labels, cum, alpha=0.12, color='#10b981')
|
| 175 |
+
ax2.axhline(100, color='#f43f5e', lw=1, ls='--', alpha=0.5)
|
| 176 |
+
for x, y in zip(labels, cum):
|
| 177 |
+
ax2.text(x, y+2, f'{y:.1f}%', ha='center', color='#10b981', fontsize=9, fontweight='bold')
|
| 178 |
+
ax2.set_title('Cumulative Variance', color='#e2e8f0', fontsize=10, fontweight='bold', pad=8)
|
| 179 |
+
ax2.set_ylabel('Cumulative (%)', color='#64748b', fontsize=9)
|
| 180 |
+
ax2.set_ylim(0, 115)
|
| 181 |
+
ax2.grid(True, color='#1e293b', lw=0.5)
|
| 182 |
+
|
| 183 |
+
fig.tight_layout(pad=2)
|
| 184 |
+
return fig
|
| 185 |
+
|
| 186 |
+
|
| 187 |
+
# ββ CSS
|
| 188 |
+
css = """
|
| 189 |
+
@import url('https://fonts.googleapis.com/css2?family=Space+Mono:wght@400;700&family=Syne:wght@400;600;800&display=swap');
|
| 190 |
+
|
| 191 |
+
body, .gradio-container { background: #0a0e1a !important; color: #e2e8f0 !important; font-family: 'Syne', sans-serif !important; }
|
| 192 |
+
.gradio-container { max-width: 1200px !important; margin: 0 auto !important; }
|
| 193 |
+
|
| 194 |
+
.header { background: linear-gradient(135deg,#0a0e1a,#111827); border: 1px solid #1e293b;
|
| 195 |
+
border-top: 3px solid #00d4ff; border-radius: 12px; padding: 28px 36px; margin-bottom: 20px; }
|
| 196 |
+
.header h1 { font-family:'Syne',sans-serif; font-size:2rem; font-weight:800;
|
| 197 |
+
background:linear-gradient(90deg,#00d4ff,#7c3aed); -webkit-background-clip:text;
|
| 198 |
+
-webkit-text-fill-color:transparent; margin:0 0 6px 0; }
|
| 199 |
+
.header p { color:#64748b; font-family:'Space Mono',monospace; font-size:0.82rem; margin:0; }
|
| 200 |
+
|
| 201 |
+
.hint { background:rgba(0,212,255,0.04); border:1px solid rgba(0,212,255,0.15);
|
| 202 |
+
border-radius:8px; padding:12px 16px; font-family:'Space Mono',monospace;
|
| 203 |
+
font-size:0.76rem; color:#64748b; line-height:1.8; margin-top:10px; }
|
| 204 |
+
.hint strong { color:#00d4ff; }
|
| 205 |
+
|
| 206 |
+
textarea { background:#060a12 !important; border:1px solid #1e293b !important;
|
| 207 |
+
color:#94a3b8 !important; font-family:'Space Mono',monospace !important;
|
| 208 |
+
font-size:0.8rem !important; border-radius:8px !important; }
|
| 209 |
+
textarea:focus { border-color:#00d4ff !important; outline:none !important; }
|
| 210 |
+
|
| 211 |
+
button { font-family:'Syne',sans-serif !important; font-weight:700 !important; border-radius:8px !important; }
|
| 212 |
+
"""
|
| 213 |
+
|
| 214 |
+
EXAMPLE = """1 2 3
|
| 215 |
+
4 5 6
|
| 216 |
+
7 8 9
|
| 217 |
+
2 4 1
|
| 218 |
+
5 1 8
|
| 219 |
+
3 6 2
|
| 220 |
+
9 3 7
|
| 221 |
+
1 8 4"""
|
| 222 |
+
|
| 223 |
+
with gr.Blocks(css=css, title="PCA Β· 3Dβ2D") as demo:
|
| 224 |
+
gr.HTML("""
|
| 225 |
+
<div class="header">
|
| 226 |
+
<h1>⬡ PCA Visualizer</h1>
|
| 227 |
+
<p>Principal Component Analysis Β· 3D → 2D Dimensionality Reduction</p>
|
| 228 |
+
</div>""")
|
| 229 |
+
|
| 230 |
+
with gr.Row():
|
| 231 |
+
with gr.Column(scale=1):
|
| 232 |
+
points_input = gr.Textbox(
|
| 233 |
+
label="3D Points (one per line: X Y Z)",
|
| 234 |
+
placeholder="1 2 3\n4 5 6\n...",
|
| 235 |
+
lines=12, value=EXAMPLE)
|
| 236 |
+
|
| 237 |
+
gr.HTML("""<div class="hint">
|
| 238 |
+
<strong>Format:</strong> X Y Z (space or comma)<br>
|
| 239 |
+
<strong>Minimum:</strong> 6 points required<br>
|
| 240 |
+
<strong>Example:</strong> 1 2 3 or 1,2,3
|
| 241 |
+
</div>""")
|
| 242 |
+
|
| 243 |
+
with gr.Row():
|
| 244 |
+
run_btn = gr.Button("βΆ Run PCA", variant="primary")
|
| 245 |
+
clear_btn = gr.Button("β Clear", variant="secondary")
|
| 246 |
+
|
| 247 |
+
with gr.Column(scale=2):
|
| 248 |
+
with gr.Tabs():
|
| 249 |
+
with gr.Tab("π Steps & Results"):
|
| 250 |
+
steps_out = gr.Textbox(label="Full PCA Computation",
|
| 251 |
+
interactive=False, lines=34)
|
| 252 |
+
with gr.Tab("π΅ 3D Input Plot"):
|
| 253 |
+
plot_3d = gr.Plot(label="Original 3D Points")
|
| 254 |
+
with gr.Tab("π£ 2D Projection"):
|
| 255 |
+
plot_2d = gr.Plot(label="PCA 2D Projection")
|
| 256 |
+
with gr.Tab("π Variance Analysis"):
|
| 257 |
+
plot_var = gr.Plot(label="Explained Variance")
|
| 258 |
+
|
| 259 |
+
run_btn.click(fn=run_pca, inputs=points_input,
|
| 260 |
+
outputs=[steps_out, plot_3d, plot_2d, plot_var])
|
| 261 |
+
clear_btn.click(fn=lambda: ("", None, None, None),
|
| 262 |
+
outputs=[points_input, plot_3d, plot_2d, plot_var])
|
| 263 |
+
|
| 264 |
+
demo.launch()
|
requirements.txt
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gradio>=4.0.0
|
| 2 |
+
numpy>=1.24.0
|
| 3 |
+
matplotlib>=3.7.0
|
| 4 |
+
Pillow>=10.0.0
|