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import warp as wp
from warp.fem.cache import (
TemporaryStore,
borrow_temporary,
borrow_temporary_like,
cached_arg_value,
)
from warp.fem.types import (
NULL_ELEMENT_INDEX,
OUTSIDE,
Coords,
ElementIndex,
Sample,
make_free_sample,
)
from .closest_point import project_on_tri_at_origin
from .element import LinearEdge, Triangle
from .geometry import Geometry
@wp.struct
class Trimesh2DCellArg:
tri_vertex_indices: wp.array2d(dtype=int)
positions: wp.array(dtype=wp.vec2)
# for neighbor cell lookup
vertex_tri_offsets: wp.array(dtype=int)
vertex_tri_indices: wp.array(dtype=int)
deformation_gradients: wp.array(dtype=wp.mat22f)
@wp.struct
class Trimesh2DSideArg:
cell_arg: Trimesh2DCellArg
edge_vertex_indices: wp.array(dtype=wp.vec2i)
edge_tri_indices: wp.array(dtype=wp.vec2i)
class Trimesh2D(Geometry):
"""Two-dimensional triangular mesh geometry"""
dimension = 2
def __init__(
self, tri_vertex_indices: wp.array, positions: wp.array, temporary_store: Optional[TemporaryStore] = None
):
"""
Constructs a two-dimensional triangular mesh.
Args:
tri_vertex_indices: warp array of shape (num_tris, 3) containing vertex indices for each tri
positions: warp array of shape (num_vertices, 2) containing 2d position for each vertex
temporary_store: shared pool from which to allocate temporary arrays
"""
self.tri_vertex_indices = tri_vertex_indices
self.positions = positions
self._edge_vertex_indices: wp.array = None
self._edge_tri_indices: wp.array = None
self._vertex_tri_offsets: wp.array = None
self._vertex_tri_indices: wp.array = None
self._build_topology(temporary_store)
self._deformation_gradients: wp.array = None
self._compute_deformation_gradients()
def cell_count(self):
return self.tri_vertex_indices.shape[0]
def vertex_count(self):
return self.positions.shape[0]
def side_count(self):
return self._edge_vertex_indices.shape[0]
def boundary_side_count(self):
return self._boundary_edge_indices.shape[0]
def reference_cell(self) -> Triangle:
return Triangle()
def reference_side(self) -> LinearEdge:
return LinearEdge()
@property
def edge_tri_indices(self) -> wp.array:
return self._edge_tri_indices
@property
def edge_vertex_indices(self) -> wp.array:
return self._edge_vertex_indices
CellArg = Trimesh2DCellArg
SideArg = Trimesh2DSideArg
@wp.struct
class SideIndexArg:
boundary_edge_indices: wp.array(dtype=int)
# Geometry device interface
@cached_arg_value
def cell_arg_value(self, device) -> CellArg:
args = self.CellArg()
args.tri_vertex_indices = self.tri_vertex_indices.to(device)
args.positions = self.positions.to(device)
args.vertex_tri_offsets = self._vertex_tri_offsets.to(device)
args.vertex_tri_indices = self._vertex_tri_indices.to(device)
args.deformation_gradients = self._deformation_gradients.to(device)
return args
@wp.func
def cell_position(args: CellArg, s: Sample):
tri_idx = args.tri_vertex_indices[s.element_index]
return (
s.element_coords[0] * args.positions[tri_idx[0]]
+ s.element_coords[1] * args.positions[tri_idx[1]]
+ s.element_coords[2] * args.positions[tri_idx[2]]
)
@wp.func
def cell_deformation_gradient(args: CellArg, s: Sample):
return args.deformation_gradients[s.element_index]
@wp.func
def cell_inverse_deformation_gradient(args: CellArg, s: Sample):
return wp.inverse(args.deformation_gradients[s.element_index])
@wp.func
def _project_on_tri(args: CellArg, pos: wp.vec2, tri_index: int):
p0 = args.positions[args.tri_vertex_indices[tri_index, 0]]
q = pos - p0
e1 = args.positions[args.tri_vertex_indices[tri_index, 1]] - p0
e2 = args.positions[args.tri_vertex_indices[tri_index, 2]] - p0
dist, coords = project_on_tri_at_origin(q, e1, e2)
return dist, coords
@wp.func
def cell_lookup(args: CellArg, pos: wp.vec2, guess: Sample):
closest_tri = int(NULL_ELEMENT_INDEX)
closest_coords = Coords(OUTSIDE)
closest_dist = float(1.0e8)
for v in range(3):
vtx = args.tri_vertex_indices[guess.element_index, v]
tri_beg = args.vertex_tri_offsets[vtx]
tri_end = args.vertex_tri_offsets[vtx + 1]
for t in range(tri_beg, tri_end):
tri = args.vertex_tri_indices[t]
dist, coords = Trimesh2D._project_on_tri(args, pos, tri)
if dist <= closest_dist:
closest_dist = dist
closest_tri = tri
closest_coords = coords
return make_free_sample(closest_tri, closest_coords)
@wp.func
def cell_measure(args: CellArg, s: Sample):
return 0.5 * wp.abs(wp.determinant(args.deformation_gradients[s.element_index]))
@wp.func
def cell_normal(args: CellArg, s: Sample):
return wp.vec2(0.0)
@cached_arg_value
def side_index_arg_value(self, device) -> SideIndexArg:
args = self.SideIndexArg()
args.boundary_edge_indices = self._boundary_edge_indices.to(device)
return args
@wp.func
def boundary_side_index(args: SideIndexArg, boundary_side_index: int):
"""Boundary side to side index"""
return args.boundary_edge_indices[boundary_side_index]
@cached_arg_value
def side_arg_value(self, device) -> CellArg:
args = self.SideArg()
args.cell_arg = self.cell_arg_value(device)
args.edge_vertex_indices = self._edge_vertex_indices.to(device)
args.edge_tri_indices = self._edge_tri_indices.to(device)
return args
@wp.func
def side_position(args: SideArg, s: Sample):
edge_idx = args.edge_vertex_indices[s.element_index]
return (1.0 - s.element_coords[0]) * args.cell_arg.positions[edge_idx[0]] + s.element_coords[
0
] * args.cell_arg.positions[edge_idx[1]]
@wp.func
def side_deformation_gradient(args: SideArg, s: Sample):
edge_idx = args.edge_vertex_indices[s.element_index]
v0 = args.cell_arg.positions[edge_idx[0]]
v1 = args.cell_arg.positions[edge_idx[1]]
return v1 - v0
@wp.func
def side_inner_inverse_deformation_gradient(args: SideArg, s: Sample):
cell_index = Trimesh2D.side_inner_cell_index(args, s.element_index)
return wp.inverse(args.cell_arg.deformation_gradients[cell_index])
@wp.func
def side_outer_inverse_deformation_gradient(args: SideArg, s: Sample):
cell_index = Trimesh2D.side_outer_cell_index(args, s.element_index)
return wp.inverse(args.cell_arg.deformation_gradients[cell_index])
@wp.func
def side_measure(args: SideArg, s: Sample):
edge_idx = args.edge_vertex_indices[s.element_index]
v0 = args.cell_arg.positions[edge_idx[0]]
v1 = args.cell_arg.positions[edge_idx[1]]
return wp.length(v1 - v0)
@wp.func
def side_measure_ratio(args: SideArg, s: Sample):
inner = Trimesh2D.side_inner_cell_index(args, s.element_index)
outer = Trimesh2D.side_outer_cell_index(args, s.element_index)
return Trimesh2D.side_measure(args, s) / wp.min(
Trimesh2D.cell_measure(args.cell_arg, make_free_sample(inner, Coords())),
Trimesh2D.cell_measure(args.cell_arg, make_free_sample(outer, Coords())),
)
@wp.func
def side_normal(args: SideArg, s: Sample):
edge_idx = args.edge_vertex_indices[s.element_index]
v0 = args.cell_arg.positions[edge_idx[0]]
v1 = args.cell_arg.positions[edge_idx[1]]
e = v1 - v0
return wp.normalize(wp.vec2(-e[1], e[0]))
@wp.func
def side_inner_cell_index(arg: SideArg, side_index: ElementIndex):
return arg.edge_tri_indices[side_index][0]
@wp.func
def side_outer_cell_index(arg: SideArg, side_index: ElementIndex):
return arg.edge_tri_indices[side_index][1]
@wp.func
def edge_to_tri_coords(args: SideArg, side_index: ElementIndex, tri_index: ElementIndex, side_coords: Coords):
edge_vidx = args.edge_vertex_indices[side_index]
tri_vidx = args.cell_arg.tri_vertex_indices[tri_index]
v0 = tri_vidx[0]
v1 = tri_vidx[1]
cx = float(0.0)
cy = float(0.0)
cz = float(0.0)
if edge_vidx[0] == v0:
cx = 1.0 - side_coords[0]
elif edge_vidx[0] == v1:
cy = 1.0 - side_coords[0]
else:
cz = 1.0 - side_coords[0]
if edge_vidx[1] == v0:
cx = side_coords[0]
elif edge_vidx[1] == v1:
cy = side_coords[0]
else:
cz = side_coords[0]
return Coords(cx, cy, cz)
@wp.func
def side_inner_cell_coords(args: SideArg, side_index: ElementIndex, side_coords: Coords):
inner_cell_index = Trimesh2D.side_inner_cell_index(args, side_index)
return Trimesh2D.edge_to_tri_coords(args, side_index, inner_cell_index, side_coords)
@wp.func
def side_outer_cell_coords(args: SideArg, side_index: ElementIndex, side_coords: Coords):
outer_cell_index = Trimesh2D.side_outer_cell_index(args, side_index)
return Trimesh2D.edge_to_tri_coords(args, side_index, outer_cell_index, side_coords)
@wp.func
def side_from_cell_coords(
args: SideArg,
side_index: ElementIndex,
tri_index: ElementIndex,
tri_coords: Coords,
):
edge_vidx = args.edge_vertex_indices[side_index]
tri_vidx = args.cell_arg.tri_vertex_indices[tri_index]
start = int(2)
end = int(2)
for k in range(2):
v = tri_vidx[k]
if edge_vidx[1] == v:
end = k
elif edge_vidx[0] == v:
start = k
return wp.select(
tri_coords[start] + tri_coords[end] > 0.999, Coords(OUTSIDE), Coords(tri_coords[end], 0.0, 0.0)
)
@wp.func
def side_to_cell_arg(side_arg: SideArg):
return side_arg.cell_arg
def _build_topology(self, temporary_store: TemporaryStore):
from warp.fem.utils import compress_node_indices, masked_indices
from warp.utils import array_scan
device = self.tri_vertex_indices.device
vertex_tri_offsets, vertex_tri_indices, _, __ = compress_node_indices(
self.vertex_count(), self.tri_vertex_indices, temporary_store=temporary_store
)
self._vertex_tri_offsets = vertex_tri_offsets.detach()
self._vertex_tri_indices = vertex_tri_indices.detach()
vertex_start_edge_count = borrow_temporary(temporary_store, dtype=int, device=device, shape=self.vertex_count())
vertex_start_edge_count.array.zero_()
vertex_start_edge_offsets = borrow_temporary_like(vertex_start_edge_count, temporary_store=temporary_store)
vertex_edge_ends = borrow_temporary(temporary_store, dtype=int, device=device, shape=(3 * self.cell_count()))
vertex_edge_tris = borrow_temporary(temporary_store, dtype=int, device=device, shape=(3 * self.cell_count(), 2))
# Count face edges starting at each vertex
wp.launch(
kernel=Trimesh2D._count_starting_edges_kernel,
device=device,
dim=self.cell_count(),
inputs=[self.tri_vertex_indices, vertex_start_edge_count.array],
)
array_scan(in_array=vertex_start_edge_count.array, out_array=vertex_start_edge_offsets.array, inclusive=False)
# Count number of unique edges (deduplicate across faces)
vertex_unique_edge_count = vertex_start_edge_count
wp.launch(
kernel=Trimesh2D._count_unique_starting_edges_kernel,
device=device,
dim=self.vertex_count(),
inputs=[
self._vertex_tri_offsets,
self._vertex_tri_indices,
self.tri_vertex_indices,
vertex_start_edge_offsets.array,
vertex_unique_edge_count.array,
vertex_edge_ends.array,
vertex_edge_tris.array,
],
)
vertex_unique_edge_offsets = borrow_temporary_like(vertex_start_edge_offsets, temporary_store=temporary_store)
array_scan(in_array=vertex_start_edge_count.array, out_array=vertex_unique_edge_offsets.array, inclusive=False)
# Get back edge count to host
if device.is_cuda:
edge_count = borrow_temporary(temporary_store, shape=(1,), dtype=int, device="cpu", pinned=True)
# Last vertex will not own any edge, so its count will be zero; just fetching last prefix count is ok
wp.copy(
dest=edge_count.array, src=vertex_unique_edge_offsets.array, src_offset=self.vertex_count() - 1, count=1
)
wp.synchronize_stream(wp.get_stream(device))
edge_count = int(edge_count.array.numpy()[0])
else:
edge_count = int(vertex_unique_edge_offsets.array.numpy()[self.vertex_count() - 1])
self._edge_vertex_indices = wp.empty(shape=(edge_count,), dtype=wp.vec2i, device=device)
self._edge_tri_indices = wp.empty(shape=(edge_count,), dtype=wp.vec2i, device=device)
boundary_mask = borrow_temporary(temporary_store=temporary_store, shape=(edge_count,), dtype=int, device=device)
# Compress edge data
wp.launch(
kernel=Trimesh2D._compress_edges_kernel,
device=device,
dim=self.vertex_count(),
inputs=[
vertex_start_edge_offsets.array,
vertex_unique_edge_offsets.array,
vertex_unique_edge_count.array,
vertex_edge_ends.array,
vertex_edge_tris.array,
self._edge_vertex_indices,
self._edge_tri_indices,
boundary_mask.array,
],
)
vertex_start_edge_offsets.release()
vertex_unique_edge_offsets.release()
vertex_unique_edge_count.release()
vertex_edge_ends.release()
vertex_edge_tris.release()
# Flip normals if necessary
wp.launch(
kernel=Trimesh2D._flip_edge_normals,
device=device,
dim=self.side_count(),
inputs=[self._edge_vertex_indices, self._edge_tri_indices, self.tri_vertex_indices, self.positions],
)
boundary_edge_indices, _ = masked_indices(boundary_mask.array, temporary_store=temporary_store)
self._boundary_edge_indices = boundary_edge_indices.detach()
boundary_mask.release()
def _compute_deformation_gradients(self):
self._deformation_gradients = wp.empty(dtype=wp.mat22f, device=self.positions.device, shape=(self.cell_count()))
wp.launch(
kernel=Trimesh2D._compute_deformation_gradients_kernel,
dim=self._deformation_gradients.shape,
device=self._deformation_gradients.device,
inputs=[self.tri_vertex_indices, self.positions, self._deformation_gradients],
)
@wp.kernel
def _count_starting_edges_kernel(
tri_vertex_indices: wp.array2d(dtype=int), vertex_start_edge_count: wp.array(dtype=int)
):
t = wp.tid()
for k in range(3):
v0 = tri_vertex_indices[t, k]
v1 = tri_vertex_indices[t, (k + 1) % 3]
if v0 < v1:
wp.atomic_add(vertex_start_edge_count, v0, 1)
else:
wp.atomic_add(vertex_start_edge_count, v1, 1)
@wp.func
def _find(
needle: int,
values: wp.array(dtype=int),
beg: int,
end: int,
):
for i in range(beg, end):
if values[i] == needle:
return i
return -1
@wp.kernel
def _count_unique_starting_edges_kernel(
vertex_tri_offsets: wp.array(dtype=int),
vertex_tri_indices: wp.array(dtype=int),
tri_vertex_indices: wp.array2d(dtype=int),
vertex_start_edge_offsets: wp.array(dtype=int),
vertex_start_edge_count: wp.array(dtype=int),
edge_ends: wp.array(dtype=int),
edge_tris: wp.array2d(dtype=int),
):
v = wp.tid()
edge_beg = vertex_start_edge_offsets[v]
tri_beg = vertex_tri_offsets[v]
tri_end = vertex_tri_offsets[v + 1]
edge_cur = edge_beg
for tri in range(tri_beg, tri_end):
t = vertex_tri_indices[tri]
for k in range(3):
v0 = tri_vertex_indices[t, k]
v1 = tri_vertex_indices[t, (k + 1) % 3]
if v == wp.min(v0, v1):
other_v = wp.max(v0, v1)
# Check if other_v has been seen
seen_idx = Trimesh2D._find(other_v, edge_ends, edge_beg, edge_cur)
if seen_idx == -1:
edge_ends[edge_cur] = other_v
edge_tris[edge_cur, 0] = t
edge_tris[edge_cur, 1] = t
edge_cur += 1
else:
edge_tris[seen_idx, 1] = t
vertex_start_edge_count[v] = edge_cur - edge_beg
@wp.kernel
def _compress_edges_kernel(
vertex_start_edge_offsets: wp.array(dtype=int),
vertex_unique_edge_offsets: wp.array(dtype=int),
vertex_unique_edge_count: wp.array(dtype=int),
uncompressed_edge_ends: wp.array(dtype=int),
uncompressed_edge_tris: wp.array2d(dtype=int),
edge_vertex_indices: wp.array(dtype=wp.vec2i),
edge_tri_indices: wp.array(dtype=wp.vec2i),
boundary_mask: wp.array(dtype=int),
):
v = wp.tid()
start_beg = vertex_start_edge_offsets[v]
unique_beg = vertex_unique_edge_offsets[v]
unique_count = vertex_unique_edge_count[v]
for e in range(unique_count):
src_index = start_beg + e
edge_index = unique_beg + e
edge_vertex_indices[edge_index] = wp.vec2i(v, uncompressed_edge_ends[src_index])
t0 = uncompressed_edge_tris[src_index, 0]
t1 = uncompressed_edge_tris[src_index, 1]
edge_tri_indices[edge_index] = wp.vec2i(t0, t1)
if t0 == t1:
boundary_mask[edge_index] = 1
else:
boundary_mask[edge_index] = 0
@wp.kernel
def _flip_edge_normals(
edge_vertex_indices: wp.array(dtype=wp.vec2i),
edge_tri_indices: wp.array(dtype=wp.vec2i),
tri_vertex_indices: wp.array2d(dtype=int),
positions: wp.array(dtype=wp.vec2),
):
e = wp.tid()
tri = edge_tri_indices[e][0]
tri_vidx = tri_vertex_indices[tri]
edge_vidx = edge_vertex_indices[e]
tri_centroid = (positions[tri_vidx[0]] + positions[tri_vidx[1]] + positions[tri_vidx[2]]) / 3.0
v0 = positions[edge_vidx[0]]
v1 = positions[edge_vidx[1]]
edge_center = 0.5 * (v1 + v0)
edge_vec = v1 - v0
edge_normal = wp.vec2(-edge_vec[1], edge_vec[0])
# if edge normal points toward first triangle centroid, flip indices
if wp.dot(tri_centroid - edge_center, edge_normal) > 0.0:
edge_vertex_indices[e] = wp.vec2i(edge_vidx[1], edge_vidx[0])
@wp.kernel
def _compute_deformation_gradients_kernel(
tri_vertex_indices: wp.array2d(dtype=int),
positions: wp.array(dtype=wp.vec2f),
transforms: wp.array(dtype=wp.mat22f),
):
t = wp.tid()
p0 = positions[tri_vertex_indices[t, 0]]
p1 = positions[tri_vertex_indices[t, 1]]
p2 = positions[tri_vertex_indices[t, 2]]
e1 = p1 - p0
e2 = p2 - p0
transforms[t] = wp.mat22(e1, e2)
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