run.sh

#!/bin/bash

# Start the orthanc service
nginx &
Orthanc /etc/orthanc/orthanc.json &

# for i in ls datasets/Task09_Spleen/imagesTs/*.nii.gz; do
#     plastimatch convert --patient-id patient1 --input $i --output-dicom test
# done && \
plastimatch convert --patient-id patient1 --input  datasets/Task09_Spleen/imagesTs/spleen_1.nii.gz   --output-dicom test && \

python -m pynetdicom storescu 127.0.0.1 4242 test -aet MONAILABEL -r -v && \
# # Start the monailabel service
monailabel start_server --app apps/radiology --studies http://127.0.0.1:8042/dicom-web --conf models deepedit 
# monailabel start_server --app apps/radiology --studies datasets/Task09_Spleen/imagesTr --conf models deepedit