final

run.sh

@@ -2,11 +2,14 @@
 
 # Start the orthanc service
 # nginx &
-Orthanc &
+Orthanc /etc/orthanc/orthanc.json &
 
-for i in ls datasets/Task09_Spleen/imagesTs/*.nii.gz; do plastimatch convert --patient-id patient1 --input $i --output-dicom test; done && \
+# for i in ls datasets/Task09_Spleen/imagesTs/*.nii.gz; do
+#     plastimatch convert --patient-id patient1 --input $i --output-dicom test
+# done && \
+plastimatch convert --patient-id patient1 --input  datasets/Task09_Spleen/imagesTs/spleen_1.nii.gz   --output-dicom test && \
 
-python -m pynetdicom storescu 127.0.0.1 4242 test -aet MONAILABEL -r   && \
+python -m pynetdicom storescu 127.0.0.1 4242 test -aet MONAILABEL -r -v && \
 # # Start the monailabel service
 monailabel start_server --app apps/radiology --studies http://127.0.0.1:8042/dicom-web --conf models deepedit 
 # monailabel start_server --app apps/radiology --studies datasets/Task09_Spleen/imagesTr --conf models deepedit