raylim commited on
Commit
f6b9dda
·
1 Parent(s): e8a801c

fix imports

Browse files
Files changed (1) hide show
  1. app.py +2 -9
app.py CHANGED
@@ -1,5 +1,6 @@
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  import gradio as gr
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  import numpy as np
 
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  from PIL import Image
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  from mussel.utils import get_features, segment_tissue
@@ -17,15 +18,7 @@ def analyze_slide(slide_path, model_name="RESNET50"):
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  )
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  df_coords = pd.DataFrame(coords, columns=['x', 'y'])
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- #features, labels = get_features(coords, slide_path, attrs, model_type=ModelType.RESNET50)
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- # feature_h5_path = "features.h5"
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- # extract_features(
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- # slide_path,
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- # output_h5_path=feature_h5_path,
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- # patch_h5_path=patch_h5_path,
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- # model_type=model_name,
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- # use_gpu=False,
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- # )
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  return df_coords
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  import gradio as gr
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  import numpy as np
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+ import pandas as pd
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  from PIL import Image
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  from mussel.utils import get_features, segment_tissue
 
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  )
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  df_coords = pd.DataFrame(coords, columns=['x', 'y'])
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+ features, labels = get_features(coords, slide_path, attrs, model_type=ModelType.RESNET50, use_gpu=False)
 
 
 
 
 
 
 
 
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  return df_coords
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