Handle legacy 'Unknown' sex values gracefully

build: leave .git in docker image

Add progressive results display and sex validation to UI

Fix premature sex validation warnings

Add python_version to HF Spaces metadata

Fix Python version compatibility for Hugging Face Spaces

Add comprehensive tests for settings upload functionality

Update tests to use required sex parameter

Add mock Gradio components for testing

Enforce required sex parameter in Gradio CLI app

Update AEON inference to require sex parameter

Remove 'Unknown' sex option from UI utilities

Make sex parameter required in encode_sex function

Fix AEON results column naming for multiple slides

Fix missing metadata files in model download

Fix GitHub Actions Docker build secret passing

Fix HF Spaces build: allow requirements.txt in Docker context

Trigger HF Spaces rebuild

Add comprehensive CLI options reference to README

Merge pull request #14 from pathology-data-mining/dev

format

Refactor inference modules to eliminate code duplication

Add CLI options to control model downloads

Add HF_TOKEN environment variable to test workflow

Update README with new Aeon inference parameters and add required CSV data files

Apply Black code formatting to test files

Fix test failures in CI environment

Update src/mosaic/inference/paladin.py

Fix GitHub Actions workflows to handle SSH private repository access

Add GitHub Actions workflows and comprehensive test suite

Fix remaining hardcoded data paths after rebase

Fix all failing batch processing tests

Fix test mocks for segment_tissue return value

Document comprehensive logging features in batch processing

Add comprehensive logging for batch processing verification

Fix segment_tissue unpacking in batch analysis

Add batch processing optimization for slide analysis

Fix user directory creation and hide HF Spaces logs locally

Merge pull request #16 from pathology-data-mining/fix/hf-cache-model-location

Merge pull request #15 from pathology-data-mining/fix/hf-cache-model-location

Fix circular import by moving get_data_directory to separate module

Fix model file location to use HuggingFace cache directory

Merge pull request #7 from pathology-data-mining/dev

Merge pull request #13 from pathology-data-mining/copilot/sub-pr-7-please-work

Define DEFAULT_TISSUE_SITE_IDX constant for "Not Applicable" tissue site

Initial plan

Merge pull request #12 from pathology-data-mining/copilot/sub-pr-7-one-more-time

Add error handling for missing tissue site CSV file

Merge pull request #10 from pathology-data-mining/copilot/sub-pr-7-another-one

Merge pull request #9 from pathology-data-mining/copilot/sub-pr-7-again