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Merge pull request #21 from pathology-data-mining/feature/hide-aeon-when-subtype-selected
6508c0b
unverified

raylim commited on

Hide Aeon results table when cancer subtype is user-supplied
f7030a4
unverified

raylim Claude Opus 4.5 commited on

refactor: optimize OncoTree API usage in TCGA mapping
aa47748
unverified

raylim Claude (claude-sonnet-4.5) commited on

feat: truncate long slide names in progress bar
60e6798
unverified

raylim Claude (claude-sonnet-4.5) commited on

refactor: consolidate TCGA cache directory management
0c53eeb
unverified

raylim Claude (claude-sonnet-4.5) commited on

fix: regenerate settings DataFrame for TCGA mode to avoid stale data
dcd826e
unverified

raylim Claude (claude-sonnet-4.5) commited on

refactor: use PNG format for mask images instead of JPEG
861d8ab
unverified

raylim Claude (claude-sonnet-4.5) commited on

refactor: implement PR review suggestions and code improvements
e6fce72
unverified

raylim Claude (claude-sonnet-4.5) commited on

feat: auto-select TCGA segmentation config for TCGA slides
56fd223
unverified

raylim Claude (claude-sonnet-4.5) commited on

Improve UI progress reporting and OncoTree bulk prefetch
96e9ae2
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raylim Claude Opus 4.5 commited on

Add HF dataset download support for telemetry reporting
4057a5e
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raylim Claude Opus 4.5 commited on

Add TCGA slide fetching capability
66a3d6a
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raylim Claude Opus 4.5 commited on

Fix telemetry upload by uploading on heartbeat and after analysis
e1e8689
unverified

raylim Claude Opus 4.5 commited on

formatting
9798363
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raylim commited on

Merge pull request #18 from pathology-data-mining/copilot/sub-pr-17
39da2dc
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raylim commited on

Move analysis_complete event logging inside try block
163f4bb

copilot-swe-agent[bot] raylim commited on

Update src/mosaic/telemetry/tracker.py
1d2f0af
unverified

raylim Copilot commited on

Update src/mosaic/ui/app.py
fdf31f7
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raylim Copilot commited on

feat: Add pipeline stage timing instrumentation to telemetry
04b9c95
unverified

raylim Claude Opus 4.5 commited on

feat: Add telemetry tracking for Mosaic HF app (CDSIENG24-595)
aaa787c
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raylim Claude Opus 4.5 commited on

Add GH_TOKEN secret to Docker builds and format code
c1b0c80
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raylim Claude Sonnet 4.5 commited on

Add comprehensive documentation to Gradio app and improve error handling
8f6bca4
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raylim Claude Sonnet 4.5 commited on

Fix Paladin model download by stripping data/ prefix for HuggingFace paths
6772e18
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raylim Claude Sonnet 4.5 commited on

Only wait for core models before analysis, allow Paladin downloads to continue in background
be237a9
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raylim Claude Sonnet 4.5 commited on

Fix path resolution error when downloading Paladin models from HuggingFace Hub
6492cf3
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raylim commited on

Apply code formatting (Black/autopep8)
769fe2c
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raylim commited on

Disable Analyze and Clear buttons during processing
eee8771
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raylim commited on

Move all model downloads to background for instant Gradio startup
3a26ad7
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raylim Claude Sonnet 4.5 commited on

Revert watch parameter - not supported in this Gradio version
df8c208
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raylim commited on

Disable Gradio file watching to prevent false restarts on HF Spaces
8bff5e9
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raylim Claude Sonnet 4.5 commited on

Fix data directory path for model loading on HF Spaces
53cc898
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raylim Claude Sonnet 4.5 commited on

Skip downloading duplicate optimus.pkl from PDM repo
ee66d31
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raylim Claude Sonnet 4.5 commited on

Bundle metadata files in repo to skip download on startup
8607da4
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raylim Claude Sonnet 4.5 commited on

Add better logging for background Paladin model downloads
d1e1666
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raylim Claude Sonnet 4.5 commited on

Implement prioritized background model downloading
a20ae90
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raylim Claude Sonnet 4.5 commited on

Keep core models loaded across requests on T4
a2d70a9
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raylim Claude Sonnet 4.5 commited on

Centralize hardware detection and optimize T4 GPU memory management
42a4892
unverified

raylim Claude Sonnet 4.5 commited on

Add aggressive GPU memory cleanup after UI analysis
4fda083
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raylim commited on

Add aggressive GPU memory cleanup for T4 instances
5549e2b
unverified

raylim commited on

Improve model download performance on HF Spaces
a15a72c
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raylim commited on

Handle legacy 'Unknown' sex values gracefully
6bb43ff
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raylim commited on

Add progressive results display and sex validation to UI
7c7a1ba
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raylim commited on

Fix premature sex validation warnings
e66cef9
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raylim commited on

Enforce required sex parameter in Gradio CLI app
ac41c6b
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raylim commited on

Update AEON inference to require sex parameter
0d1b788
unverified

raylim commited on

Remove 'Unknown' sex option from UI utilities
ddfa8f1
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raylim commited on

Make sex parameter required in encode_sex function
466e964
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raylim commited on

Fix AEON results column naming for multiple slides
7774e34
unverified

raylim commited on

Fix missing metadata files in model download
df63a56

raylim Claude Sonnet 4.5 commited on

format
2f29552
unverified

raylim commited on