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Update test.py
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test.py
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@@ -3,6 +3,27 @@ import re
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import pandas as pd
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def extract_table(text):
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# Find the start and end of the table
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start = text.find("| Biomarker Name |")
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import pandas as pd
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{
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Biomarker Name Source: entity_name,
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Biomarker Test Type: test_method_name,
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Biomarker Variant Type:variant_type,
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Exon Number Start: exon_location_start,
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Exon Number End: exon_location_end,
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Chromosome Number: exon_location_chromosome_number,
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Genomic Position: exon_location_genomic_position,
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Protein Alteration (p Notation Source): protein_change,
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Trancript ID (Protein): protein_change_transcript_id,
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DNA Alteration (c notation Source): nucleotide_change,
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DNA Alteration (c notation Source): nucleotide_change_transcript_id,
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Biomarker Test Result Value Numeric 1: numeric_result_numeric_1,
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Biomarker Test Result Value Numeric 2: numeric_result_numeric_2,
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Biomarker Test Threshold Value Numeric 1: numeric_result_threshold_1,
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Biomarker Test Threshold Value Numeric 2: numeric_result_threshold_2,
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Biomarker Test Result Source: categorical_result
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}
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def extract_table(text):
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# Find the start and end of the table
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start = text.find("| Biomarker Name |")
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