Update app.py
Browse files
app.py
CHANGED
|
@@ -7,84 +7,105 @@ from PIL import Image
|
|
| 7 |
import os
|
| 8 |
import time
|
| 9 |
|
| 10 |
-
#
|
|
|
|
|
|
|
| 11 |
transform = transforms.Compose([
|
| 12 |
-
transforms.Resize((
|
| 13 |
transforms.ToTensor(),
|
| 14 |
-
transforms.Normalize(
|
|
|
|
|
|
|
|
|
|
| 15 |
])
|
| 16 |
|
| 17 |
-
#
|
|
|
|
|
|
|
| 18 |
class FineTunedResNet(nn.Module):
|
| 19 |
def __init__(self, num_classes=4):
|
| 20 |
-
super(
|
| 21 |
-
self.resnet = models.resnet50(
|
|
|
|
|
|
|
| 22 |
|
| 23 |
-
# Replace the fully connected layer with more layers and batch normalization
|
| 24 |
self.resnet.fc = nn.Sequential(
|
| 25 |
-
nn.Linear(self.resnet.fc.in_features, 1024),
|
| 26 |
nn.BatchNorm1d(1024),
|
| 27 |
nn.ReLU(),
|
| 28 |
nn.Dropout(0.5),
|
| 29 |
-
|
|
|
|
| 30 |
nn.BatchNorm1d(512),
|
| 31 |
nn.ReLU(),
|
| 32 |
nn.Dropout(0.5),
|
| 33 |
-
|
|
|
|
| 34 |
nn.BatchNorm1d(256),
|
| 35 |
nn.ReLU(),
|
| 36 |
nn.Dropout(0.5),
|
| 37 |
-
|
|
|
|
| 38 |
)
|
| 39 |
|
| 40 |
def forward(self, x):
|
| 41 |
return self.resnet(x)
|
| 42 |
|
| 43 |
-
|
| 44 |
-
|
|
|
|
|
|
|
| 45 |
|
| 46 |
-
if not os.path.exists(
|
| 47 |
-
raise FileNotFoundError(f"
|
| 48 |
|
| 49 |
-
model
|
|
|
|
| 50 |
model.eval()
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 51 |
|
| 52 |
-
# Define a function to make predictions
|
| 53 |
-
def predict(image):
|
| 54 |
-
start_time = time.time() # Start the timer
|
| 55 |
-
image = transform(image).unsqueeze(0) # Transform and add batch dimension
|
| 56 |
-
|
| 57 |
with torch.no_grad():
|
| 58 |
output = model(image)
|
| 59 |
-
|
| 60 |
-
|
| 61 |
-
|
| 62 |
-
|
| 63 |
-
|
| 64 |
-
|
| 65 |
-
|
| 66 |
-
|
| 67 |
-
|
| 68 |
-
|
| 69 |
-
result += f"{classes[top_class[i]]}: Score {top_prob[i].item()}\n"
|
| 70 |
-
result += f"Prediction Time: {prediction_time:.2f} seconds"
|
| 71 |
-
|
| 72 |
return result
|
| 73 |
|
| 74 |
-
#
|
|
|
|
|
|
|
| 75 |
examples = [
|
| 76 |
-
[
|
| 77 |
-
[
|
| 78 |
-
[
|
| 79 |
-
[
|
| 80 |
-
[
|
| 81 |
-
[
|
| 82 |
-
[
|
| 83 |
-
[
|
| 84 |
-
[
|
| 85 |
]
|
| 86 |
|
| 87 |
-
#
|
|
|
|
|
|
|
| 88 |
visualization_images = [
|
| 89 |
"pictures/1.png",
|
| 90 |
"pictures/2.png",
|
|
@@ -93,86 +114,41 @@ visualization_images = [
|
|
| 93 |
"pictures/5.png"
|
| 94 |
]
|
| 95 |
|
| 96 |
-
# Function to display visualization images
|
| 97 |
def display_visualizations():
|
| 98 |
-
return [Image.open(
|
| 99 |
-
|
| 100 |
-
# Custom CSS to enhance appearance (injected via HTML)
|
| 101 |
-
custom_css = """
|
| 102 |
-
<style>
|
| 103 |
-
body {
|
| 104 |
-
font-family: 'Arial', sans-serif;
|
| 105 |
-
background-color: #f5f5f5;
|
| 106 |
-
}
|
| 107 |
-
.gradio-container {
|
| 108 |
-
background-color: #ffffff;
|
| 109 |
-
border: 1px solid #e6e6e6;
|
| 110 |
-
box-shadow: 0 4px 8px rgba(0, 0, 0, 0.1);
|
| 111 |
-
border-radius: 10px;
|
| 112 |
-
padding: 20px;
|
| 113 |
-
}
|
| 114 |
-
.gradio-title {
|
| 115 |
-
color: #333333;
|
| 116 |
-
font-weight: bold;
|
| 117 |
-
font-size: 24px;
|
| 118 |
-
margin-bottom: 10px;
|
| 119 |
-
}
|
| 120 |
-
.gradio-description {
|
| 121 |
-
color: #666666;
|
| 122 |
-
font-size: 16px;
|
| 123 |
-
margin-bottom: 20px;
|
| 124 |
-
}
|
| 125 |
-
.gradio-image {
|
| 126 |
-
border-radius: 10px;
|
| 127 |
-
}
|
| 128 |
-
.gradio-button {
|
| 129 |
-
background-color: #007bff;
|
| 130 |
-
color: #ffffff;
|
| 131 |
-
border: none;
|
| 132 |
-
padding: 10px 20px;
|
| 133 |
-
border-radius: 5px;
|
| 134 |
-
cursor: pointer;
|
| 135 |
-
}
|
| 136 |
-
.gradio-button:hover {
|
| 137 |
-
background-color: #0056b3;
|
| 138 |
-
}
|
| 139 |
-
.gradio-label {
|
| 140 |
-
color: #007bff;
|
| 141 |
-
font-weight: bold;
|
| 142 |
-
}
|
| 143 |
-
</style>
|
| 144 |
-
"""
|
| 145 |
|
| 146 |
-
#
|
|
|
|
|
|
|
| 147 |
prediction_interface = gr.Interface(
|
| 148 |
fn=predict,
|
| 149 |
-
inputs=gr.Image(type="pil", label="Upload Chest X-ray
|
| 150 |
-
outputs=gr.
|
| 151 |
examples=examples,
|
|
|
|
| 152 |
title="Lung Disease Detection XVI",
|
| 153 |
-
description=
|
| 154 |
-
|
| 155 |
-
|
| 156 |
-
|
| 157 |
-
"""
|
| 158 |
)
|
| 159 |
|
| 160 |
visualization_interface = gr.Interface(
|
| 161 |
fn=display_visualizations,
|
| 162 |
inputs=None,
|
| 163 |
-
outputs=[
|
| 164 |
-
|
| 165 |
-
|
| 166 |
-
|
| 167 |
-
|
| 168 |
-
"""
|
| 169 |
)
|
| 170 |
|
| 171 |
-
# Combine interfaces into a tabbed interface
|
| 172 |
app = gr.TabbedInterface(
|
| 173 |
interface_list=[prediction_interface, visualization_interface],
|
| 174 |
tab_names=["Predict", "Model Performance"]
|
| 175 |
)
|
| 176 |
|
| 177 |
-
#
|
| 178 |
-
|
|
|
|
|
|
|
|
|
| 7 |
import os
|
| 8 |
import time
|
| 9 |
|
| 10 |
+
# =========================
|
| 11 |
+
# Image preprocessing
|
| 12 |
+
# =========================
|
| 13 |
transform = transforms.Compose([
|
| 14 |
+
transforms.Resize((224, 224)), # Required for ResNet50
|
| 15 |
transforms.ToTensor(),
|
| 16 |
+
transforms.Normalize(
|
| 17 |
+
mean=[0.485, 0.456, 0.406],
|
| 18 |
+
std=[0.229, 0.224, 0.225]
|
| 19 |
+
)
|
| 20 |
])
|
| 21 |
|
| 22 |
+
# =========================
|
| 23 |
+
# Model definition
|
| 24 |
+
# =========================
|
| 25 |
class FineTunedResNet(nn.Module):
|
| 26 |
def __init__(self, num_classes=4):
|
| 27 |
+
super().__init__()
|
| 28 |
+
self.resnet = models.resnet50(
|
| 29 |
+
weights=models.ResNet50_Weights.DEFAULT
|
| 30 |
+
)
|
| 31 |
|
|
|
|
| 32 |
self.resnet.fc = nn.Sequential(
|
| 33 |
+
nn.Linear(self.resnet.fc.in_features, 1024),
|
| 34 |
nn.BatchNorm1d(1024),
|
| 35 |
nn.ReLU(),
|
| 36 |
nn.Dropout(0.5),
|
| 37 |
+
|
| 38 |
+
nn.Linear(1024, 512),
|
| 39 |
nn.BatchNorm1d(512),
|
| 40 |
nn.ReLU(),
|
| 41 |
nn.Dropout(0.5),
|
| 42 |
+
|
| 43 |
+
nn.Linear(512, 256),
|
| 44 |
nn.BatchNorm1d(256),
|
| 45 |
nn.ReLU(),
|
| 46 |
nn.Dropout(0.5),
|
| 47 |
+
|
| 48 |
+
nn.Linear(256, num_classes)
|
| 49 |
)
|
| 50 |
|
| 51 |
def forward(self, x):
|
| 52 |
return self.resnet(x)
|
| 53 |
|
| 54 |
+
# =========================
|
| 55 |
+
# Load model
|
| 56 |
+
# =========================
|
| 57 |
+
MODEL_PATH = "models/final_fine_tuned_resnet50.pth"
|
| 58 |
|
| 59 |
+
if not os.path.exists(MODEL_PATH):
|
| 60 |
+
raise FileNotFoundError(f"Model not found: {MODEL_PATH}")
|
| 61 |
|
| 62 |
+
model = FineTunedResNet(num_classes=4)
|
| 63 |
+
model.load_state_dict(torch.load(MODEL_PATH, map_location="cpu"))
|
| 64 |
model.eval()
|
| 65 |
+
model.to("cpu")
|
| 66 |
+
|
| 67 |
+
CLASSES = ["🦠 COVID", "🫁 Normal", "🦠 Pneumonia", "🦠 TB"]
|
| 68 |
+
|
| 69 |
+
# =========================
|
| 70 |
+
# Prediction function
|
| 71 |
+
# =========================
|
| 72 |
+
def predict(image: Image.Image) -> str:
|
| 73 |
+
start = time.time()
|
| 74 |
+
|
| 75 |
+
image = transform(image).unsqueeze(0)
|
| 76 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 77 |
with torch.no_grad():
|
| 78 |
output = model(image)
|
| 79 |
+
probs = F.softmax(output, dim=1)[0]
|
| 80 |
+
top_probs, top_idxs = torch.topk(probs, 3)
|
| 81 |
+
|
| 82 |
+
elapsed = time.time() - start
|
| 83 |
+
|
| 84 |
+
result = "Top Predictions:\n\n"
|
| 85 |
+
for prob, idx in zip(top_probs, top_idxs):
|
| 86 |
+
result += f"{CLASSES[idx]} → {prob.item():.4f}\n"
|
| 87 |
+
|
| 88 |
+
result += f"\n⏱️ Prediction Time: {elapsed:.2f} seconds"
|
|
|
|
|
|
|
|
|
|
| 89 |
return result
|
| 90 |
|
| 91 |
+
# =========================
|
| 92 |
+
# Example images
|
| 93 |
+
# =========================
|
| 94 |
examples = [
|
| 95 |
+
["examples/Pneumonia/02009view1_frontal.jpg"],
|
| 96 |
+
["examples/Pneumonia/02055view1_frontal.jpg"],
|
| 97 |
+
["examples/Pneumonia/03152view1_frontal.jpg"],
|
| 98 |
+
["examples/COVID/11547_2020_1200_Fig3_HTML-a.png"],
|
| 99 |
+
["examples/COVID/11547_2020_1200_Fig3_HTML-b.png"],
|
| 100 |
+
["examples/COVID/11547_2020_1203_Fig1_HTML-b.png"],
|
| 101 |
+
["examples/Normal/06bc1cfe-23a0-43a4-a01b-dfa10314bbb0.jpg"],
|
| 102 |
+
["examples/Normal/08ae6c0b-d044-4de2-a410-b3cf8dc65868.jpg"],
|
| 103 |
+
["examples/Normal/IM-0178-0001.jpeg"]
|
| 104 |
]
|
| 105 |
|
| 106 |
+
# =========================
|
| 107 |
+
# Visualization images
|
| 108 |
+
# =========================
|
| 109 |
visualization_images = [
|
| 110 |
"pictures/1.png",
|
| 111 |
"pictures/2.png",
|
|
|
|
| 114 |
"pictures/5.png"
|
| 115 |
]
|
| 116 |
|
|
|
|
| 117 |
def display_visualizations():
|
| 118 |
+
return [Image.open(path) for path in visualization_images]
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 119 |
|
| 120 |
+
# =========================
|
| 121 |
+
# Gradio interfaces
|
| 122 |
+
# =========================
|
| 123 |
prediction_interface = gr.Interface(
|
| 124 |
fn=predict,
|
| 125 |
+
inputs=gr.Image(type="pil", label="Upload Chest X-ray"),
|
| 126 |
+
outputs=gr.Textbox(label="Prediction Result"),
|
| 127 |
examples=examples,
|
| 128 |
+
cache_examples=False, # IMPORTANT for HF Spaces
|
| 129 |
title="Lung Disease Detection XVI",
|
| 130 |
+
description="""
|
| 131 |
+
Upload a chest X-ray image to detect:
|
| 132 |
+
🦠 COVID-19 • 🦠 Pneumonia • 🫁 Normal • 🦠 Tuberculosis
|
| 133 |
+
"""
|
|
|
|
| 134 |
)
|
| 135 |
|
| 136 |
visualization_interface = gr.Interface(
|
| 137 |
fn=display_visualizations,
|
| 138 |
inputs=None,
|
| 139 |
+
outputs=[
|
| 140 |
+
gr.Image(type="pil", label=f"Visualization {i+1}")
|
| 141 |
+
for i in range(len(visualization_images))
|
| 142 |
+
],
|
| 143 |
+
title="Model Performance Visualizations"
|
|
|
|
| 144 |
)
|
| 145 |
|
|
|
|
| 146 |
app = gr.TabbedInterface(
|
| 147 |
interface_list=[prediction_interface, visualization_interface],
|
| 148 |
tab_names=["Predict", "Model Performance"]
|
| 149 |
)
|
| 150 |
|
| 151 |
+
# =========================
|
| 152 |
+
# Launch (HF Spaces safe)
|
| 153 |
+
# =========================
|
| 154 |
+
app.launch()
|