Commit
·
26d4422
1
Parent(s):
f1351d2
Refactor parse progress (#3781)
Browse files### What problem does this PR solve?
Refactor parse file progress
### Type of change
- [x] Refactoring
Signed-off-by: jinhai <haijin.chn@gmail.com>
- rag/app/naive.py +10 -12
- rag/svr/task_executor.py +63 -62
rag/app/naive.py
CHANGED
|
@@ -193,7 +193,7 @@ def chunk(filename, binary=None, from_page=0, to_page=100000,
|
|
| 193 |
Next, these successive pieces are merge into chunks whose token number is no more than 'Max token number'.
|
| 194 |
"""
|
| 195 |
|
| 196 |
-
|
| 197 |
parser_config = kwargs.get(
|
| 198 |
"parser_config", {
|
| 199 |
"chunk_token_num": 128, "delimiter": "\n!?。;!?", "layout_recognize": True})
|
|
@@ -206,8 +206,8 @@ def chunk(filename, binary=None, from_page=0, to_page=100000,
|
|
| 206 |
pdf_parser = None
|
| 207 |
if re.search(r"\.docx$", filename, re.IGNORECASE):
|
| 208 |
callback(0.1, "Start to parse.")
|
| 209 |
-
sections,
|
| 210 |
-
res = tokenize_table(
|
| 211 |
|
| 212 |
callback(0.8, "Finish parsing.")
|
| 213 |
st = timer()
|
|
@@ -220,16 +220,14 @@ def chunk(filename, binary=None, from_page=0, to_page=100000,
|
|
| 220 |
if kwargs.get("section_only", False):
|
| 221 |
return chunks
|
| 222 |
|
| 223 |
-
res.extend(tokenize_chunks_docx(chunks, doc,
|
| 224 |
logging.info("naive_merge({}): {}".format(filename, timer() - st))
|
| 225 |
return res
|
| 226 |
|
| 227 |
elif re.search(r"\.pdf$", filename, re.IGNORECASE):
|
| 228 |
-
pdf_parser = Pdf(
|
| 229 |
-
|
| 230 |
-
|
| 231 |
-
from_page=from_page, to_page=to_page, callback=callback)
|
| 232 |
-
res = tokenize_table(tbls, doc, eng)
|
| 233 |
|
| 234 |
elif re.search(r"\.xlsx?$", filename, re.IGNORECASE):
|
| 235 |
callback(0.1, "Start to parse.")
|
|
@@ -248,8 +246,8 @@ def chunk(filename, binary=None, from_page=0, to_page=100000,
|
|
| 248 |
|
| 249 |
elif re.search(r"\.(md|markdown)$", filename, re.IGNORECASE):
|
| 250 |
callback(0.1, "Start to parse.")
|
| 251 |
-
sections,
|
| 252 |
-
res = tokenize_table(
|
| 253 |
callback(0.8, "Finish parsing.")
|
| 254 |
|
| 255 |
elif re.search(r"\.(htm|html)$", filename, re.IGNORECASE):
|
|
@@ -289,7 +287,7 @@ def chunk(filename, binary=None, from_page=0, to_page=100000,
|
|
| 289 |
if kwargs.get("section_only", False):
|
| 290 |
return chunks
|
| 291 |
|
| 292 |
-
res.extend(tokenize_chunks(chunks, doc,
|
| 293 |
logging.info("naive_merge({}): {}".format(filename, timer() - st))
|
| 294 |
return res
|
| 295 |
|
|
|
|
| 193 |
Next, these successive pieces are merge into chunks whose token number is no more than 'Max token number'.
|
| 194 |
"""
|
| 195 |
|
| 196 |
+
is_english = lang.lower() == "english" # is_english(cks)
|
| 197 |
parser_config = kwargs.get(
|
| 198 |
"parser_config", {
|
| 199 |
"chunk_token_num": 128, "delimiter": "\n!?。;!?", "layout_recognize": True})
|
|
|
|
| 206 |
pdf_parser = None
|
| 207 |
if re.search(r"\.docx$", filename, re.IGNORECASE):
|
| 208 |
callback(0.1, "Start to parse.")
|
| 209 |
+
sections, tables = Docx()(filename, binary)
|
| 210 |
+
res = tokenize_table(tables, doc, is_english) # just for table
|
| 211 |
|
| 212 |
callback(0.8, "Finish parsing.")
|
| 213 |
st = timer()
|
|
|
|
| 220 |
if kwargs.get("section_only", False):
|
| 221 |
return chunks
|
| 222 |
|
| 223 |
+
res.extend(tokenize_chunks_docx(chunks, doc, is_english, images))
|
| 224 |
logging.info("naive_merge({}): {}".format(filename, timer() - st))
|
| 225 |
return res
|
| 226 |
|
| 227 |
elif re.search(r"\.pdf$", filename, re.IGNORECASE):
|
| 228 |
+
pdf_parser = Pdf() if parser_config.get("layout_recognize", True) else PlainParser()
|
| 229 |
+
sections, tables = pdf_parser(filename if not binary else binary, from_page=from_page, to_page=to_page, callback=callback)
|
| 230 |
+
res = tokenize_table(tables, doc, is_english)
|
|
|
|
|
|
|
| 231 |
|
| 232 |
elif re.search(r"\.xlsx?$", filename, re.IGNORECASE):
|
| 233 |
callback(0.1, "Start to parse.")
|
|
|
|
| 246 |
|
| 247 |
elif re.search(r"\.(md|markdown)$", filename, re.IGNORECASE):
|
| 248 |
callback(0.1, "Start to parse.")
|
| 249 |
+
sections, tables = Markdown(int(parser_config.get("chunk_token_num", 128)))(filename, binary)
|
| 250 |
+
res = tokenize_table(tables, doc, is_english)
|
| 251 |
callback(0.8, "Finish parsing.")
|
| 252 |
|
| 253 |
elif re.search(r"\.(htm|html)$", filename, re.IGNORECASE):
|
|
|
|
| 287 |
if kwargs.get("section_only", False):
|
| 288 |
return chunks
|
| 289 |
|
| 290 |
+
res.extend(tokenize_chunks(chunks, doc, is_english, pdf_parser))
|
| 291 |
logging.info("naive_merge({}): {}".format(filename, timer() - st))
|
| 292 |
return res
|
| 293 |
|
rag/svr/task_executor.py
CHANGED
|
@@ -19,6 +19,7 @@
|
|
| 19 |
|
| 20 |
import logging
|
| 21 |
import sys
|
|
|
|
| 22 |
from api.utils.log_utils import initRootLogger
|
| 23 |
|
| 24 |
CONSUMER_NO = "0" if len(sys.argv) < 2 else sys.argv[1]
|
|
@@ -166,52 +167,44 @@ def get_storage_binary(bucket, name):
|
|
| 166 |
return STORAGE_IMPL.get(bucket, name)
|
| 167 |
|
| 168 |
|
| 169 |
-
def
|
| 170 |
-
if
|
| 171 |
-
set_progress(
|
| 172 |
-
|
| 173 |
return []
|
| 174 |
|
| 175 |
-
|
| 176 |
-
set_progress,
|
| 177 |
-
row["id"],
|
| 178 |
-
row["from_page"],
|
| 179 |
-
row["to_page"])
|
| 180 |
-
chunker = FACTORY[row["parser_id"].lower()]
|
| 181 |
try:
|
| 182 |
st = timer()
|
| 183 |
-
bucket, name = File2DocumentService.get_storage_address(doc_id=
|
| 184 |
binary = get_storage_binary(bucket, name)
|
| 185 |
-
logging.info(
|
| 186 |
-
"From minio({}) {}/{}".format(timer() - st, row["location"], row["name"]))
|
| 187 |
except TimeoutError:
|
| 188 |
-
|
| 189 |
-
logging.exception(
|
| 190 |
-
"Minio {}/{} got timeout: Fetch file from minio timeout.".format(row["location"], row["name"]))
|
| 191 |
raise
|
| 192 |
except Exception as e:
|
| 193 |
if re.search("(No such file|not found)", str(e)):
|
| 194 |
-
|
| 195 |
else:
|
| 196 |
-
|
| 197 |
-
logging.exception("Chunking {}/{} got exception".format(
|
| 198 |
raise
|
| 199 |
|
| 200 |
try:
|
| 201 |
-
cks = chunker.chunk(
|
| 202 |
-
to_page=
|
| 203 |
-
kb_id=
|
| 204 |
-
logging.info("Chunking({}) {}/{} done".format(timer() - st,
|
| 205 |
except Exception as e:
|
| 206 |
-
|
| 207 |
-
|
| 208 |
-
logging.exception("Chunking {}/{} got exception".format(row["location"], row["name"]))
|
| 209 |
raise
|
| 210 |
|
| 211 |
docs = []
|
| 212 |
doc = {
|
| 213 |
-
"doc_id":
|
| 214 |
-
"kb_id": str(
|
| 215 |
}
|
| 216 |
el = 0
|
| 217 |
for ck in cks:
|
|
@@ -240,41 +233,40 @@ def build(row):
|
|
| 240 |
d["image"].save(output_buffer, format='JPEG')
|
| 241 |
|
| 242 |
st = timer()
|
| 243 |
-
STORAGE_IMPL.put(
|
| 244 |
el += timer() - st
|
| 245 |
except Exception:
|
| 246 |
-
logging.exception(
|
| 247 |
-
"Saving image of chunk {}/{}/{} got exception".format(row["location"], row["name"], d["_id"]))
|
| 248 |
raise
|
| 249 |
|
| 250 |
-
d["img_id"] = "{}-{}".format(
|
| 251 |
del d["image"]
|
| 252 |
docs.append(d)
|
| 253 |
-
logging.info("MINIO PUT({}):{}".format(
|
| 254 |
|
| 255 |
-
if
|
| 256 |
st = timer()
|
| 257 |
-
|
| 258 |
-
chat_mdl = LLMBundle(
|
| 259 |
for d in docs:
|
| 260 |
d["important_kwd"] = keyword_extraction(chat_mdl, d["content_with_weight"],
|
| 261 |
-
|
| 262 |
d["important_tks"] = rag_tokenizer.tokenize(" ".join(d["important_kwd"]))
|
| 263 |
-
|
| 264 |
|
| 265 |
-
if
|
| 266 |
st = timer()
|
| 267 |
-
|
| 268 |
-
chat_mdl = LLMBundle(
|
| 269 |
for d in docs:
|
| 270 |
-
qst = question_proposal(chat_mdl, d["content_with_weight"],
|
| 271 |
d["content_with_weight"] = f"Question: \n{qst}\n\nAnswer:\n" + d["content_with_weight"]
|
| 272 |
qst = rag_tokenizer.tokenize(qst)
|
| 273 |
if "content_ltks" in d:
|
| 274 |
d["content_ltks"] += " " + qst
|
| 275 |
if "content_sm_ltks" in d:
|
| 276 |
d["content_sm_ltks"] += " " + rag_tokenizer.fine_grained_tokenize(qst)
|
| 277 |
-
|
| 278 |
|
| 279 |
return docs
|
| 280 |
|
|
@@ -389,7 +381,9 @@ def do_handle_task(task):
|
|
| 389 |
# bind embedding model
|
| 390 |
embedding_model = LLMBundle(task_tenant_id, LLMType.EMBEDDING, llm_name=task_embedding_id, lang=task_language)
|
| 391 |
except Exception as e:
|
| 392 |
-
|
|
|
|
|
|
|
| 393 |
raise
|
| 394 |
|
| 395 |
# Either using RAPTOR or Standard chunking methods
|
|
@@ -399,14 +393,16 @@ def do_handle_task(task):
|
|
| 399 |
chat_model = LLMBundle(task_tenant_id, LLMType.CHAT, llm_name=task_llm_id, lang=task_language)
|
| 400 |
|
| 401 |
# run RAPTOR
|
| 402 |
-
chunks,
|
| 403 |
except Exception as e:
|
| 404 |
-
|
|
|
|
|
|
|
| 405 |
raise
|
| 406 |
else:
|
| 407 |
# Standard chunking methods
|
| 408 |
start_ts = timer()
|
| 409 |
-
chunks =
|
| 410 |
logging.info("Build document {}: {:.2f}s".format(task_document_name, timer() - start_ts))
|
| 411 |
if chunks is None:
|
| 412 |
return
|
|
@@ -418,38 +414,43 @@ def do_handle_task(task):
|
|
| 418 |
progress_callback(msg="Generate {} chunks".format(len(chunks)))
|
| 419 |
start_ts = timer()
|
| 420 |
try:
|
| 421 |
-
|
| 422 |
except Exception as e:
|
| 423 |
-
|
| 424 |
-
|
| 425 |
-
|
|
|
|
| 426 |
raise
|
| 427 |
-
|
| 428 |
-
|
|
|
|
| 429 |
# logging.info(f"task_executor init_kb index {search.index_name(task_tenant_id)} embedding_model {embedding_model.llm_name} vector length {vector_size}")
|
| 430 |
init_kb(task, vector_size)
|
| 431 |
chunk_count = len(set([chunk["id"] for chunk in chunks]))
|
| 432 |
start_ts = timer()
|
| 433 |
-
|
| 434 |
es_bulk_size = 4
|
| 435 |
for b in range(0, len(chunks), es_bulk_size):
|
| 436 |
-
|
| 437 |
if b % 128 == 0:
|
| 438 |
progress_callback(prog=0.8 + 0.1 * (b + 1) / len(chunks), msg="")
|
| 439 |
logging.info("Indexing {} elapsed: {:.2f}".format(task_document_name, timer() - start_ts))
|
| 440 |
-
if
|
| 441 |
-
|
|
|
|
| 442 |
settings.docStoreConn.delete({"doc_id": task_doc_id}, search.index_name(task_tenant_id), task_dataset_id)
|
| 443 |
-
logging.error(
|
| 444 |
-
raise Exception(
|
| 445 |
|
| 446 |
if TaskService.do_cancel(task_id):
|
| 447 |
settings.docStoreConn.delete({"doc_id": task_doc_id}, search.index_name(task_tenant_id), task_dataset_id)
|
| 448 |
return
|
| 449 |
|
| 450 |
-
|
| 451 |
-
|
| 452 |
-
|
|
|
|
|
|
|
| 453 |
|
| 454 |
|
| 455 |
def handle_task():
|
|
|
|
| 19 |
|
| 20 |
import logging
|
| 21 |
import sys
|
| 22 |
+
|
| 23 |
from api.utils.log_utils import initRootLogger
|
| 24 |
|
| 25 |
CONSUMER_NO = "0" if len(sys.argv) < 2 else sys.argv[1]
|
|
|
|
| 167 |
return STORAGE_IMPL.get(bucket, name)
|
| 168 |
|
| 169 |
|
| 170 |
+
def build_chunks(task, progress_callback):
|
| 171 |
+
if task["size"] > DOC_MAXIMUM_SIZE:
|
| 172 |
+
set_progress(task["id"], prog=-1, msg="File size exceeds( <= %dMb )" %
|
| 173 |
+
(int(DOC_MAXIMUM_SIZE / 1024 / 1024)))
|
| 174 |
return []
|
| 175 |
|
| 176 |
+
chunker = FACTORY[task["parser_id"].lower()]
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 177 |
try:
|
| 178 |
st = timer()
|
| 179 |
+
bucket, name = File2DocumentService.get_storage_address(doc_id=task["doc_id"])
|
| 180 |
binary = get_storage_binary(bucket, name)
|
| 181 |
+
logging.info("From minio({}) {}/{}".format(timer() - st, task["location"], task["name"]))
|
|
|
|
| 182 |
except TimeoutError:
|
| 183 |
+
progress_callback(-1, "Internal server error: Fetch file from minio timeout. Could you try it again.")
|
| 184 |
+
logging.exception("Minio {}/{} got timeout: Fetch file from minio timeout.".format(task["location"], task["name"]))
|
|
|
|
| 185 |
raise
|
| 186 |
except Exception as e:
|
| 187 |
if re.search("(No such file|not found)", str(e)):
|
| 188 |
+
progress_callback(-1, "Can not find file <%s> from minio. Could you try it again?" % task["name"])
|
| 189 |
else:
|
| 190 |
+
progress_callback(-1, "Get file from minio: %s" % str(e).replace("'", ""))
|
| 191 |
+
logging.exception("Chunking {}/{} got exception".format(task["location"], task["name"]))
|
| 192 |
raise
|
| 193 |
|
| 194 |
try:
|
| 195 |
+
cks = chunker.chunk(task["name"], binary=binary, from_page=task["from_page"],
|
| 196 |
+
to_page=task["to_page"], lang=task["language"], callback=progress_callback,
|
| 197 |
+
kb_id=task["kb_id"], parser_config=task["parser_config"], tenant_id=task["tenant_id"])
|
| 198 |
+
logging.info("Chunking({}) {}/{} done".format(timer() - st, task["location"], task["name"]))
|
| 199 |
except Exception as e:
|
| 200 |
+
progress_callback(-1, "Internal server error while chunking: %s" % str(e).replace("'", ""))
|
| 201 |
+
logging.exception("Chunking {}/{} got exception".format(task["location"], task["name"]))
|
|
|
|
| 202 |
raise
|
| 203 |
|
| 204 |
docs = []
|
| 205 |
doc = {
|
| 206 |
+
"doc_id": task["doc_id"],
|
| 207 |
+
"kb_id": str(task["kb_id"])
|
| 208 |
}
|
| 209 |
el = 0
|
| 210 |
for ck in cks:
|
|
|
|
| 233 |
d["image"].save(output_buffer, format='JPEG')
|
| 234 |
|
| 235 |
st = timer()
|
| 236 |
+
STORAGE_IMPL.put(task["kb_id"], d["id"], output_buffer.getvalue())
|
| 237 |
el += timer() - st
|
| 238 |
except Exception:
|
| 239 |
+
logging.exception("Saving image of chunk {}/{}/{} got exception".format(task["location"], task["name"], d["_id"]))
|
|
|
|
| 240 |
raise
|
| 241 |
|
| 242 |
+
d["img_id"] = "{}-{}".format(task["kb_id"], d["id"])
|
| 243 |
del d["image"]
|
| 244 |
docs.append(d)
|
| 245 |
+
logging.info("MINIO PUT({}):{}".format(task["name"], el))
|
| 246 |
|
| 247 |
+
if task["parser_config"].get("auto_keywords", 0):
|
| 248 |
st = timer()
|
| 249 |
+
progress_callback(msg="Start to generate keywords for every chunk ...")
|
| 250 |
+
chat_mdl = LLMBundle(task["tenant_id"], LLMType.CHAT, llm_name=task["llm_id"], lang=task["language"])
|
| 251 |
for d in docs:
|
| 252 |
d["important_kwd"] = keyword_extraction(chat_mdl, d["content_with_weight"],
|
| 253 |
+
task["parser_config"]["auto_keywords"]).split(",")
|
| 254 |
d["important_tks"] = rag_tokenizer.tokenize(" ".join(d["important_kwd"]))
|
| 255 |
+
progress_callback(msg="Keywords generation completed in {:.2f}s".format(timer() - st))
|
| 256 |
|
| 257 |
+
if task["parser_config"].get("auto_questions", 0):
|
| 258 |
st = timer()
|
| 259 |
+
progress_callback(msg="Start to generate questions for every chunk ...")
|
| 260 |
+
chat_mdl = LLMBundle(task["tenant_id"], LLMType.CHAT, llm_name=task["llm_id"], lang=task["language"])
|
| 261 |
for d in docs:
|
| 262 |
+
qst = question_proposal(chat_mdl, d["content_with_weight"], task["parser_config"]["auto_questions"])
|
| 263 |
d["content_with_weight"] = f"Question: \n{qst}\n\nAnswer:\n" + d["content_with_weight"]
|
| 264 |
qst = rag_tokenizer.tokenize(qst)
|
| 265 |
if "content_ltks" in d:
|
| 266 |
d["content_ltks"] += " " + qst
|
| 267 |
if "content_sm_ltks" in d:
|
| 268 |
d["content_sm_ltks"] += " " + rag_tokenizer.fine_grained_tokenize(qst)
|
| 269 |
+
progress_callback(msg="Question generation completed in {:.2f}s".format(timer() - st))
|
| 270 |
|
| 271 |
return docs
|
| 272 |
|
|
|
|
| 381 |
# bind embedding model
|
| 382 |
embedding_model = LLMBundle(task_tenant_id, LLMType.EMBEDDING, llm_name=task_embedding_id, lang=task_language)
|
| 383 |
except Exception as e:
|
| 384 |
+
error_message = f'Fail to bind embedding model: {str(e)}'
|
| 385 |
+
progress_callback(-1, msg=error_message)
|
| 386 |
+
logging.exception(error_message)
|
| 387 |
raise
|
| 388 |
|
| 389 |
# Either using RAPTOR or Standard chunking methods
|
|
|
|
| 393 |
chat_model = LLMBundle(task_tenant_id, LLMType.CHAT, llm_name=task_llm_id, lang=task_language)
|
| 394 |
|
| 395 |
# run RAPTOR
|
| 396 |
+
chunks, token_count, vector_size = run_raptor(task, chat_model, embedding_model, progress_callback)
|
| 397 |
except Exception as e:
|
| 398 |
+
error_message = f'Fail to bind LLM used by RAPTOR: {str(e)}'
|
| 399 |
+
progress_callback(-1, msg=error_message)
|
| 400 |
+
logging.exception(error_message)
|
| 401 |
raise
|
| 402 |
else:
|
| 403 |
# Standard chunking methods
|
| 404 |
start_ts = timer()
|
| 405 |
+
chunks = build_chunks(task, progress_callback)
|
| 406 |
logging.info("Build document {}: {:.2f}s".format(task_document_name, timer() - start_ts))
|
| 407 |
if chunks is None:
|
| 408 |
return
|
|
|
|
| 414 |
progress_callback(msg="Generate {} chunks".format(len(chunks)))
|
| 415 |
start_ts = timer()
|
| 416 |
try:
|
| 417 |
+
token_count, vector_size = embedding(chunks, embedding_model, task_parser_config, progress_callback)
|
| 418 |
except Exception as e:
|
| 419 |
+
error_message = "Generate embedding error:{}".format(str(e))
|
| 420 |
+
progress_callback(-1, error_message)
|
| 421 |
+
logging.exception(error_message)
|
| 422 |
+
token_count = 0
|
| 423 |
raise
|
| 424 |
+
progress_message = "Embedding chunks ({:.2f}s)".format(timer() - start_ts)
|
| 425 |
+
logging.info(progress_message)
|
| 426 |
+
progress_callback(msg=progress_message)
|
| 427 |
# logging.info(f"task_executor init_kb index {search.index_name(task_tenant_id)} embedding_model {embedding_model.llm_name} vector length {vector_size}")
|
| 428 |
init_kb(task, vector_size)
|
| 429 |
chunk_count = len(set([chunk["id"] for chunk in chunks]))
|
| 430 |
start_ts = timer()
|
| 431 |
+
doc_store_result = ""
|
| 432 |
es_bulk_size = 4
|
| 433 |
for b in range(0, len(chunks), es_bulk_size):
|
| 434 |
+
doc_store_result = settings.docStoreConn.insert(chunks[b:b + es_bulk_size], search.index_name(task_tenant_id), task_dataset_id)
|
| 435 |
if b % 128 == 0:
|
| 436 |
progress_callback(prog=0.8 + 0.1 * (b + 1) / len(chunks), msg="")
|
| 437 |
logging.info("Indexing {} elapsed: {:.2f}".format(task_document_name, timer() - start_ts))
|
| 438 |
+
if doc_store_result:
|
| 439 |
+
error_message = "Insert chunk error: {doc_store_result}, please check log file and Elasticsearch/Infinity status!"
|
| 440 |
+
progress_callback(-1, msg=error_message)
|
| 441 |
settings.docStoreConn.delete({"doc_id": task_doc_id}, search.index_name(task_tenant_id), task_dataset_id)
|
| 442 |
+
logging.error(error_message)
|
| 443 |
+
raise Exception(error_message)
|
| 444 |
|
| 445 |
if TaskService.do_cancel(task_id):
|
| 446 |
settings.docStoreConn.delete({"doc_id": task_doc_id}, search.index_name(task_tenant_id), task_dataset_id)
|
| 447 |
return
|
| 448 |
|
| 449 |
+
DocumentService.increment_chunk_num(task_doc_id, task_dataset_id, token_count, chunk_count, 0)
|
| 450 |
+
|
| 451 |
+
time_cost = timer() - start_ts
|
| 452 |
+
progress_callback(prog=1.0, msg="Done ({:.2f}s)".format(time_cost))
|
| 453 |
+
logging.info("Chunk doc({}), token({}), chunks({}), elapsed:{:.2f}".format(task_id, token_count, len(chunks), time_cost))
|
| 454 |
|
| 455 |
|
| 456 |
def handle_task():
|