File size: 26,305 Bytes
ef393a2 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 | """GENERATED by scratchpad/gen_coverage_seed.py, de-identified. Do not edit by hand.
The field coverage seed for the TCGA-UCEC project's REDCap target dictionary (#237): the record types
it draws from, and every target field with the record type that fulfils it and its live-fill config.
Carries only generic medical schema; no clinic or person name.
"""
PROJECT_ID = "endometrial"
DICTIONARY_ID = "redcap_partner/v1"
# (record_type_id, name, blurb); record_type_id doubles as the source_class today.
RECORD_TYPES = [
('pathology_extraction', 'Our pathology extraction', 'Read from the scanned pathology report'),
('clinical_join', 'GDC clinical join', 'Arrives from the linked GDC clinical record'),
('registry_join', 'National registry', 'A national cancer registry supplies it'),
('local_research', 'Local research only', 'Captured only by local chart review'),
('none', 'No source yet', 'Record-keeping or gate, no clinical source'),
]
# (name, label, section, record_type_id, fill_via, fill_key)
FIELDS = [
('record_id', 'Record ID', 'Record ID', 'none', None, None),
('pt_id', 'Unique patient identifier', 'Demographic Details', 'clinical_join', None, None),
('dob', 'Date of birth', 'Demographic Details', 'clinical_join', None, None),
('height_cm', 'Height (cm)', 'Demographic Details', 'clinical_join', None, None),
('weight_kg', 'Weight (kg)', 'Demographic Details', 'clinical_join', None, None),
('bmi', 'BMI', 'Demographic Details', 'clinical_join', None, None),
('bmi_auto', 'BMI (auto-calculated)', 'Demographic Details', 'clinical_join', None, None),
('date_dx', 'Date of diagnosis', 'Demographic Details', 'clinical_join', None, None),
('date_dx_user_update', 'Need to modify the date of diagnosis?', 'Demographic Details', 'clinical_join', None, None),
('date_dx_user', 'Date of diagnosis (manual)', 'Demographic Details', 'clinical_join', None, None),
('date_dx_user_cmt', 'Comments re changes to date of diagnosis', 'Demographic Details', 'clinical_join', None, None),
('site_num', 'Site number: indicates the nth cancer site this patient is', 'Demographic Details', 'clinical_join', None, None),
('site_num_user_update', 'Need to modify the site number?', 'Demographic Details', 'clinical_join', None, None),
('site_num_user', 'Site number (manual)', 'Demographic Details', 'clinical_join', None, None),
('site_num_user_cmt', 'Comments re changes to site number', 'Demographic Details', 'clinical_join', None, None),
('full_term_pregnancies', 'Parity', 'Clinical Consult', 'local_research', None, None),
('immunosuppressed_y_n', 'Is the patient immunosuppressed?', 'Clinical Consult', 'local_research', None, None),
('immunosuppressed_info', 'Information on immunosuppression', 'Clinical Consult', 'local_research', None, None),
('immunosuppressed_explain', 'Please include any additional information regarding the', 'Clinical Consult', 'none', None, None),
('history_of_hormonal_contraceptive', 'History of hormonal contraceptive use (pick one)', 'Clinical Consult', 'local_research', None, None),
('hormonal_contraceptive_type', 'Hormonal contraceptive type', 'Clinical Consult', 'local_research', None, None),
('specify_hormonal_contraceptive_type', 'Please specify hormonal contraceptive type (free text)', 'Clinical Consult', 'none', None, None),
('tamoxifen_use', 'Tamoxifen use (pick one)', 'Clinical Consult', 'local_research', None, None),
('menopause_status', 'Menopause status (pick one)', 'Clinical Consult', 'local_research', None, None),
('hrt_use', 'HRT use (pick one)', 'Clinical Consult', 'local_research', None, None),
('specify_hrt_use', 'Please specify HRT use (free text)', 'Clinical Consult', 'none', None, None),
('patient_s_ethnicity', "Is information about the patient's ethnicity of this", 'Clinical Consult', 'registry_join', None, None),
('ethnicity_new', 'Ethnicity group', 'Clinical Consult', 'registry_join', None, None),
('specify_ethnicity_group', 'Please specify ethnicity group (free text)', 'Clinical Consult', 'none', None, None),
('ethnicity', 'Ethnicity group (pick any that apply)', 'Clinical Consult', 'registry_join', None, None),
('aboriginal_group', 'Which aboriginal group did patient belong to?', 'Clinical Consult', 'registry_join', None, None),
('ethnic_ancestry', 'Ethnic ancestry', 'Clinical Consult', 'registry_join', None, None),
('aboriginal_ancestry', 'Which aboriginal ancestry did patient have?', 'Clinical Consult', 'registry_join', None, None),
('comorb', 'Clinical comorbidities', 'Clinical Consult', 'registry_join', None, None),
('other_comorb', 'Please specify clinical comorbidities (free text)', 'Clinical Consult', 'none', None, None),
('family_history_colorectal_cancer', 'Did patient have family history of colorectal cancer?', 'Clinical Consult', 'local_research', None, None),
('specify_family_history_colorectal_cancer', 'Please specify family history of colorectal cancer (free text)', 'Clinical Consult', 'local_research', None, None),
('personal_history_colorectal_cancer', 'Did patient have personal history of colorectal cancer?', 'Clinical Consult', 'local_research', None, None),
('specify_personal_history_colorectal_cancer', 'Please specify personal history of colorectal cancer', 'Clinical Consult', 'none', None, None),
('imaging_preop', 'Preop imaging performed?', 'Preop Radiology Findings', 'none', None, None),
('preop_imaging_modality', 'PreOp imaging modality', 'Preop Radiology Findings', 'local_research', None, None),
('tumour_size_image_avai', 'Is tumour size or endometrial thickness on imaging', 'Preop Radiology Findings', 'none', None, None),
('tumour_size_imaging', 'Tumour size or endometrial thickness on imaging (cm,', 'Preop Radiology Findings', 'local_research', None, None),
('ca125_level_avai', 'Is preop CA125 level documented?', 'Preop Ca125', 'none', None, None),
('ca125_level', 'Preop CA125 level (U/mL)', 'Preop Ca125', 'local_research', None, None),
('ca125_assay', 'Name of CA125 assay used, if known (free text)', 'Preop Ca125', 'none', None, None),
('clinical_stage', 'Clinical stage', 'Info from OP Note', 'registry_join', None, None),
('post_surg_imaging', 'Was imaging undertaken after Hyst that resulted in', 'Info from OP Note', 'local_research', None, None),
('upstaged_by_post_op_imaging', 'Please detail imaging modality used and findings', 'Info from OP Note', 'none', None, None),
('clinical_stage_freetext', 'Please provide the clinical stage (free text)', 'Info from OP Note', 'none', None, None),
('neoadj', 'Did the patient have neoadjuvant or primary', 'Info from OP Note', 'registry_join', None, None),
('staging_procedure', 'Did this patient have a staging', 'Info from OP Note', 'registry_join', None, None),
('date_surg', 'Date of surgery', 'Info from OP Note', 'registry_join', None, None),
('procedure_type', 'Hysterectomy, procedure type (pick one)', 'Info from OP Note', 'registry_join', None, None),
('procedure_type_freetext', 'Please specify procedure type (free text)', 'Info from OP Note', 'none', None, None),
('gyn_sur', 'Was the surgery performed by a general gynecologist or', 'Info from OP Note', 'local_research', None, None),
('ascites', 'Ascites (pick one)', 'Info from OP Note', 'local_research', None, None),
('gross_residual_disease', 'Gross residual disease (pick one)', 'Info from OP Note', 'registry_join', None, None),
('hist_dx', 'Biopsy histologic type', 'PATH PARAMETERS - Biopsy', 'pathology_extraction', 'checklist', 'histologic_type'),
('specify_histologic_type', 'Please specify the histologic type (free text)', 'PATH PARAMETERS - Biopsy', 'pathology_extraction', None, None),
('mixed_cell_carci_biopsy', 'Please specify types and percentages of mixed cell', 'PATH PARAMETERS - Biopsy', 'pathology_extraction', None, None),
('grade', 'Biopsy grade (pick one)', 'PATH PARAMETERS - Biopsy', 'pathology_extraction', 'checklist', 'histologic_grade'),
('date_biopsy_reported', 'Date of biopsy reported', 'PATH PARAMETERS - Biopsy', 'pathology_extraction', None, None),
('ihc', 'IHC performed on biopsy?', 'PATH PARAMETERS - Biopsy', 'pathology_extraction', None, None),
('msh6_biopsy', 'MSH6 performed?', 'PATH PARAMETERS - Biopsy', 'pathology_extraction', None, None),
('msh6_staining_biopsy', 'MSH6 staining', 'PATH PARAMETERS - Biopsy', 'pathology_extraction', None, None),
('pms2_biopsy', 'PMS2 performed?', 'PATH PARAMETERS - Biopsy', 'pathology_extraction', None, None),
('pms2_staining_biopsy', 'PMS2 staining', 'PATH PARAMETERS - Biopsy', 'pathology_extraction', None, None),
('msh2_biopsy', 'MSH2 performed?', 'PATH PARAMETERS - Biopsy', 'pathology_extraction', None, None),
('msh2_staining_biopsy', 'MSH2 staining', 'PATH PARAMETERS - Biopsy', 'pathology_extraction', None, None),
('mlh1_biopsy', 'MLH1 performed?', 'PATH PARAMETERS - Biopsy', 'pathology_extraction', None, None),
('mlh1_staining_biopsy', 'MLH1 staining', 'PATH PARAMETERS - Biopsy', 'pathology_extraction', None, None),
('p53_biopsy', 'p53 staining performed?', 'PATH PARAMETERS - Biopsy', 'pathology_extraction', None, None),
('p53_staining_biopsy', 'p53 staining', 'PATH PARAMETERS - Biopsy', 'pathology_extraction', None, None),
('other_ihc_performed', 'Other IHC performed?', 'PATH PARAMETERS - Biopsy', 'pathology_extraction', None, None),
('other_ihc', 'Please specify other IHC performed and reported', 'PATH PARAMETERS - Biopsy', 'pathology_extraction', None, None),
('mlh1meth_testing', 'MLH1 hypermethylation testing performed on either', 'PATH PARAMETERS - Biopsy', 'pathology_extraction', None, None),
('mlh1meth_testing_ans', 'Hypermethylation test result (pick one)', 'PATH PARAMETERS - Biopsy', 'pathology_extraction', None, None),
('hist', 'Hysterectomy histotype assigned', 'PATH PARAMETERS - HYST', 'pathology_extraction', 'checklist', 'histologic_type'),
('other_endo_carcinoma', 'Please specify endometrioid carcinoma, other variant', 'PATH PARAMETERS - HYST', 'pathology_extraction', None, None),
('type_per_mixedcell', 'Please specify types and percentages of mixed cell', 'PATH PARAMETERS - HYST', 'pathology_extraction', None, None),
('other_histypes', 'Please specify histologic type that is not listed above', 'PATH PARAMETERS - HYST', 'pathology_extraction', None, None),
('hyst_grade', 'Hysterectomy tumor grade', 'PATH PARAMETERS - HYST', 'pathology_extraction', 'checklist', 'histologic_grade'),
('tumor_size', 'Hysterectomy tumor size in maximum dimension (cm,', 'PATH PARAMETERS - HYST', 'pathology_extraction', None, None),
('myo', 'Myoinvasion (pick one)', 'PATH PARAMETERS - HYST', 'pathology_extraction', 'checklist', 'myometrial_invasion_percent'),
('lvi', 'LVI (pick one)', 'PATH PARAMETERS - HYST', 'pathology_extraction', 'checklist', 'lymphovascular_space_invasion'),
('lvi_detail', 'LVI detail', 'PATH PARAMETERS - HYST', 'pathology_extraction', 'checklist', 'lymphovascular_space_invasion'),
('stage_full', 'FIGO stage (based on Hysterectomy specimen)', 'PATH PARAMETERS - HYST', 'pathology_extraction', 'checklist', 'pathologic_stage'),
('tnm_t', 'TNM - T ( Tumor) T0: No evidence of primary tumor T1', 'PATH PARAMETERS - HYST', 'pathology_extraction', 'checklist', 'pathologic_stage'),
('tnm_n', 'TNM - N ( Nodes) N0: No regional lymph node', 'PATH PARAMETERS - HYST', 'pathology_extraction', 'checklist', 'pathologic_stage'),
('tnm_m', 'TNM - M ( Metastasis) M0 : No distant metastasis M1', 'PATH PARAMETERS - HYST', 'pathology_extraction', 'checklist', 'pathologic_stage'),
('cervix', 'Cervical stromal involvement', 'PATH PARAMETERS - HYST', 'pathology_extraction', 'checklist', 'cervical_stromal_invasion'),
('omentum', 'Was the omentum involved by metastatic carcinoma?', 'PATH PARAMETERS - HYST', 'pathology_extraction', None, None),
('ihc_done', 'IHC performed on hysterectomy specimen?', 'PATH PARAMETERS - HYST', 'pathology_extraction', None, None),
('msh6_hyst', 'MSH6 performed ?', 'PATH PARAMETERS - HYST', 'pathology_extraction', None, None),
('msh6_staining_hyst', 'MSH6 staining', 'PATH PARAMETERS - HYST', 'pathology_extraction', 'checklist', 'molecular_classification'),
('pms2_hyst', 'PMS2 performed?', 'PATH PARAMETERS - HYST', 'pathology_extraction', None, None),
('pms2_staining_hyst', 'PMS2 staining', 'PATH PARAMETERS - HYST', 'pathology_extraction', 'checklist', 'molecular_classification'),
('msh2_hyst', 'MSH2 performed?', 'PATH PARAMETERS - HYST', 'pathology_extraction', None, None),
('msh2_staining_hyst', 'MSH2 staining', 'PATH PARAMETERS - HYST', 'pathology_extraction', 'checklist', 'molecular_classification'),
('mlh1_hyst', 'MLH1 performed?', 'PATH PARAMETERS - HYST', 'pathology_extraction', None, None),
('mlh1_staining_hyst', 'MLH1 staining', 'PATH PARAMETERS - HYST', 'pathology_extraction', 'checklist', 'molecular_classification'),
('p53_hyst', 'p53 staining performed?', 'PATH PARAMETERS - HYST', 'pathology_extraction', None, None),
('p53_staining_hyst', 'p53 staining', 'PATH PARAMETERS - HYST', 'pathology_extraction', 'checklist', 'molecular_classification'),
('other_ihc_performed_hyst', 'Other IHC performed?', 'PATH PARAMETERS - HYST', 'pathology_extraction', None, None),
('other_ihc_hyst', 'Please specify other IHC performed and reported', 'PATH PARAMETERS - HYST', 'pathology_extraction', None, None),
('adnexal', 'Adnexal involvement', 'PATH PARAMETERS- HYST- Ovary and other', 'pathology_extraction', None, None),
('seoc', 'Was there synchronous ovarian neoplastic pathology', 'PATH PARAMETERS- HYST- Ovary and other', 'pathology_extraction', None, None),
('seoc_ov_neo', 'Please select all that apply', 'PATH PARAMETERS- HYST- Ovary and other', 'pathology_extraction', None, None),
('hist_grd', 'Please provide histologic grade (pick one)', 'PATH PARAMETERS- HYST- Ovary and other', 'pathology_extraction', None, None),
('granu_cell_type', 'Please provide granulosa cell tumor type (pick one)', 'PATH PARAMETERS- HYST- Ovary and other', 'pathology_extraction', None, None),
('other_seoc_ov_neo', 'Please select from the drop-down menu (pick one from', 'PATH PARAMETERS- HYST- Ovary and other', 'pathology_extraction', None, None),
('specify_other_sexcord', 'Please specify other sex cord-stromal tumor (free text)', 'PATH PARAMETERS- HYST- Ovary and other', 'pathology_extraction', None, None),
('teratoma_grd', 'Immature teratoma grade (pick one)', 'PATH PARAMETERS- HYST- Ovary and other', 'pathology_extraction', None, None),
('other_histype', 'Please specify other histologic type not listed above', 'PATH PARAMETERS- HYST- Ovary and other', 'pathology_extraction', None, None),
('ov_neo_path_stage', 'Please provide the pathologic stage of the ovarian', 'PATH PARAMETERS- HYST- Ovary and other', 'pathology_extraction', None, None),
('additional_neo_path', 'Were there any additional neoplastic pathological', 'PATH PARAMETERS- HYST- Ovary and other', 'pathology_extraction', None, None),
('ov_surface', 'Surface/capsule involvement of the ovary', 'PATH PARAMETERS- HYST- Ovary and other', 'pathology_extraction', None, None),
('ov_bilateral', 'Bilateral ovarian involvement', 'PATH PARAMETERS- HYST- Ovary and other', 'pathology_extraction', None, None),
('preop_rupture', 'Pre-operative rupture of the ovarian mass', 'PATH PARAMETERS- HYST- Ovary and other', 'pathology_extraction', None, None),
('intraop_rupture', 'Intra-operative rupture of the ovarian mass', 'PATH PARAMETERS- HYST- Ovary and other', 'pathology_extraction', None, None),
('endometriosis_yn', 'Presence of endometriosis in the ovary and/or pelvis', 'PATH PARAMETERS- HYST- Ovary and other', 'pathology_extraction', None, None),
('perit_wash', 'Result of peritoneal washings performed at time of', 'PATH PARAMETERS - Cytology', 'pathology_extraction', None, None),
('lymph_node', 'Was regional* lymph node sampling performed on this', 'Regional Lymph Node Status', 'pathology_extraction', 'checklist', 'regional_lymph_node_status'),
('lymph_node_sampling', 'Lymph node sampling (check all that apply)', 'Regional Lymph Node Status', 'pathology_extraction', None, None),
('lymph_node_sampling_other', 'Please specify lymph node sampling (free text)', 'Regional Lymph Node Status', 'pathology_extraction', None, None),
('total_lymph_nodes', 'Total number of lymph nodes sampled', 'Regional Lymph Node Status', 'pathology_extraction', 'checklist', 'regional_lymph_node_status'),
('lymph_nodes_with_metas', 'Total number of lymph nodes with metastatic', 'Regional Lymph Node Status', 'pathology_extraction', 'checklist', 'regional_lymph_node_status'),
('check_lymphnodes_w_metas', 'Lymph nodes with metastatic involvement (check all', 'Regional Lymph Node Status', 'pathology_extraction', None, None),
('lymph_node_itc', 'ITC involving how many lymph nodes?', 'Regional Lymph Node Status', 'pathology_extraction', None, None),
('lymph_node_micrometastases', 'Micrometastases involving how many lymph nodes?', 'Regional Lymph Node Status', 'pathology_extraction', None, None),
('lymph_node_macrometastases', 'Macrometastases involving how many lymph nodes?', 'Regional Lymph Node Status', 'pathology_extraction', None, None),
('chemo_y_n_adj', 'Adjuvant chemo given (conventional not hormonal)?', 'Treatment - CHEMO/HORMONES', 'clinical_join', 'outcome', 'chemotherapy'),
('pharm_dates_known_adj', 'Are chemo start and end dates known?', 'Treatment - CHEMO/HORMONES', 'clinical_join', None, None),
('chemo_start_date', 'Chemotherapy start date', 'Treatment - CHEMO/HORMONES', 'clinical_join', None, None),
('chemo_end_date', 'Chemotherapy stop date', 'Treatment - CHEMO/HORMONES', 'clinical_join', None, None),
('chemo_cycle', 'Total number of adjuvant chemotherapy cycles?', 'Treatment - CHEMO/HORMONES', 'clinical_join', None, None),
('chemo_agent', 'Chemotherapy agent(s) used (check all that apply)', 'Treatment - CHEMO/HORMONES', 'clinical_join', None, None),
('pharm_drugs_other', 'Please specify other chemotherapy agent(s) used (free text)', 'Treatment - CHEMO/HORMONES', 'clinical_join', None, None),
('chemo_y_n_rec', 'Chemotherapy (conventional not hormonal) given in', 'Treatment - CHEMO/HORMONES', 'clinical_join', None, None),
('pharm_drugs_rec', 'Chemotherapy agent(s) used in the context of', 'Treatment - CHEMO/HORMONES', 'clinical_join', None, None),
('pharm_drugs_other_chemo', 'Please specify other chemo agent(s) used (free text)', 'Treatment - CHEMO/HORMONES', 'clinical_join', None, None),
('horm_y_n_pre', 'Hormonal therapy prior to hysterectomy?', 'Treatment - CHEMO/HORMONES', 'clinical_join', None, None),
('horm_dates_y_n', 'Are hormonal therapy start and end dates known?', 'Treatment - CHEMO/HORMONES', 'clinical_join', None, None),
('horm_start_date', 'Hormonal start date', 'Treatment - CHEMO/HORMONES', 'clinical_join', None, None),
('horm_stop', 'Hormonal end date', 'Treatment - CHEMO/HORMONES', 'clinical_join', None, None),
('horm_drugs', 'Hormonal drug name (check all that apply)', 'Treatment - CHEMO/HORMONES', 'clinical_join', None, None),
('horm_drugs_other', 'Please specify hormonal drug name (free text)', 'Treatment - CHEMO/HORMONES', 'clinical_join', None, None),
('horm_y_n_adj', 'Hormonal therapy after hysterectomy as adjuvant?', 'Treatment - CHEMO/HORMONES', 'clinical_join', 'outcome', 'hormone'),
('horm_dates_y_n_adj', 'Are hormonal therapy start and end dates known?', 'Treatment - CHEMO/HORMONES', 'clinical_join', None, None),
('horm_start_date_adj', 'Hormonal start date', 'Treatment - CHEMO/HORMONES', 'clinical_join', None, None),
('horm_stop_adj', 'Hormonal end date', 'Treatment - CHEMO/HORMONES', 'clinical_join', None, None),
('horm_drugs_adj', 'Hormonal drug name (check all that apply)', 'Treatment - CHEMO/HORMONES', 'clinical_join', None, None),
('horm_drugs_other_adj', 'Please specify hormonal drug name (free text)', 'Treatment - CHEMO/HORMONES', 'clinical_join', None, None),
('xrt_y_n_adj', 'Adjuvant Radiotherapy given?', 'Treatment RTX', 'clinical_join', 'outcome', 'radiation'),
('xrt_dates_adj', 'Are radiation start and end dates known?', 'Treatment RTX', 'clinical_join', None, None),
('date_rad_start', 'Radiation start date', 'Treatment RTX', 'clinical_join', None, None),
('date_rad_end', 'Radiation end date', 'Treatment RTX', 'clinical_join', None, None),
('rad_type', 'Radiation type (check all that apply)', 'Treatment RTX', 'clinical_join', None, None),
('distant_disease_specify', 'Please specify distribution/extent of distant disease', 'Treatment RTX', 'clinical_join', None, None),
('other_xrt_type_specify', 'Please specify radiation type (free text)', 'Treatment RTX', 'clinical_join', None, None),
('rad_dose', 'Please specify the radiation dose given (free text)', 'Treatment RTX', 'clinical_join', None, None),
('xrt_fractions', 'Please specify the number of fractions given (free text)', 'Treatment RTX', 'clinical_join', None, None),
('xrt_y_n_rec', 'Radiotherapy given in the context of recurrence?', 'Treatment RTX', 'clinical_join', None, None),
('rad_type_rec', 'Radiation type (check all that apply)', 'Treatment RTX', 'clinical_join', None, None),
('distant_disease_rec', 'Please specify distribution/extent of distant disease', 'Treatment RTX', 'clinical_join', None, None),
('other_xrt_type_specify_rec', 'Please specify radiation type (free text)', 'Treatment RTX', 'clinical_join', None, None),
('immune_rx', 'Did this patient receive immunotherapy?', 'Immune Therapy or Clinical Trial', 'clinical_join', None, None),
('immune_rx_dates', 'Are immunotherapy start and end dates known?', 'Immune Therapy or Clinical Trial', 'clinical_join', None, None),
('immunotherapy_start_date', 'Immunotherapy start date', 'Immune Therapy or Clinical Trial', 'clinical_join', None, None),
('immunotherapy_end_date', 'Immunotherapy end date', 'Immune Therapy or Clinical Trial', 'clinical_join', None, None),
('immunotherapy_drugs', 'Please give immunotherapy regime description (free text)', 'Immune Therapy or Clinical Trial', 'clinical_join', None, None),
('part_clinical_trial', 'Did this patient participate in a clinical trial?', 'Immune Therapy or Clinical Trial', 'clinical_join', None, None),
('part_clinical_trial_specify', 'What is the clinical trial name?', 'Immune Therapy or Clinical Trial', 'clinical_join', None, None),
('clinical_trial_drugs', 'Which drugs are used?', 'Immune Therapy or Clinical Trial', 'clinical_join', None, None),
('refhcp', 'Is this patient referred to HCP?', 'Hereditary Cancer Program (HCP)', 'clinical_join', None, None),
('hcp_apt_date', 'What is the HCP appointment date?', 'Hereditary Cancer Program (HCP)', 'clinical_join', None, None),
('lynch', 'Lynch/HNPCC mutation identified?', 'Hereditary Cancer Program (HCP)', 'clinical_join', None, None),
('mutation', 'Please specify which mutation (free text)', 'Hereditary Cancer Program (HCP)', 'clinical_join', None, None),
('brca', 'BRCA Germline mutation identified? (pick one)', 'Hereditary Cancer Program (HCP)', 'clinical_join', None, None),
('brca_specify', 'Please specify BRCA Germline mutation (free text)', 'Hereditary Cancer Program (HCP)', 'clinical_join', None, None),
('other_mut', 'Other pathogenic mutations identified? (pick all that', 'Hereditary Cancer Program (HCP)', 'clinical_join', None, None),
('other_mut_specify', 'Please specify pathogenic mutation or variant of', 'Hereditary Cancer Program (HCP)', 'clinical_join', None, None),
('surv_where', 'Surveillance for this patient (pick one)', 'Surveillance', 'clinical_join', None, None),
('surv_int_yr1', 'Surveillance intervals first year (pick one)', 'Surveillance', 'clinical_join', None, None),
('surv_int_yr1_specify', 'Please specify surveillance intervals in the first year', 'Surveillance', 'clinical_join', None, None),
('surv_int_yr2', 'Surveillance intervals second year (pick one)', 'Surveillance', 'clinical_join', None, None),
('surv_int_yr2_specify', 'Please specify surveillance intervals in the second year', 'Surveillance', 'clinical_join', None, None),
('prog_yn', 'Did this patient have recurrence event?', 'Follow up/RECURRENCE', 'clinical_join', 'outcome', 'recurrence'),
('rec_event', 'Recurrence event as defined by', 'Follow up/RECURRENCE', 'clinical_join', None, None),
('rec_details', 'Please provide the relevant details (free text)', 'Follow up/RECURRENCE', 'clinical_join', None, None),
('rec_location', 'Recurrence location(s) (pick all that apply)', 'Follow up/RECURRENCE', 'clinical_join', None, None),
('date_prog', 'Date of first recurrence', 'Follow up/RECURRENCE', 'clinical_join', 'outcome', 'recurrence'),
('add_prog', 'Did this patient have second recurrence?', 'Follow up/RECURRENCE', 'clinical_join', None, None),
('date_lfu', 'Date of last contact', 'Follow up/RECURRENCE', 'clinical_join', 'outcome', 'vital'),
('status_last_seen', 'Status at last contact (pick one)', 'Follow up/RECURRENCE', 'clinical_join', 'outcome', 'vital'),
('alive_w_morbidity', 'Please specify types of morbidity (free text)', 'Follow up/RECURRENCE', 'clinical_join', None, None),
('cause_death', 'Cause of death', 'Follow up/RECURRENCE', 'clinical_join', None, None),
('cause_death_specify', 'Please specify intercurrent illness (e.g., breast cancer)', 'Follow up/RECURRENCE', 'clinical_join', None, None),
('date_death', 'Date of death', 'Follow up/RECURRENCE', 'clinical_join', 'outcome', 'vital'),
('comments', 'Final comments (free text)', 'Final Comments', 'none', None, None),
('date_completion', 'Date this questionnaire is completed by clinician', 'Final Comments', 'none', None, None),
('respondent_name', "Survey respondent's name", 'Final Comments', 'none', None, None),
('tce_survey_complete', 'Complete?', 'Form Status', 'none', None, None),
]
|