| dimension,surface_form,kind,mapped_concept_id,predicate,bucket,channel,count_source,decision_ref,note |
| lvsi,lvsi_sf_identified,coded,cap_uterus.lvsi.present,exactMatch,covered,text,,,"LVSI asserted present. CAP and FIGO 2023 both name it." |
| lvsi,lvsi_sf_present,coded,cap_uterus.lvsi.present,exactMatch,covered,text,,,"" |
| lvsi,lvsi_sf_negative,coded,cap_uterus.lvsi.not_identified,exactMatch,covered,text,,,"Also figo_endo_2023.lvsi.negative." |
| lvsi,lvsi_sf_not_identified,coded,cap_uterus.lvsi.not_identified,exactMatch,covered,text,,,"" |
| lvsi,lvsi_sf_absent,coded,cap_uterus.lvsi.not_identified,exactMatch,covered,text,,,"" |
| lvsi,lvsi_sf_none,coded,cap_uterus.lvsi.not_identified,exactMatch,covered,text,,,"" |
| lvsi,lvsi_sf_focal,coded,figo_endo_2023.lvsi.focal,exactMatch,covered,text,,,"FIGO 2023 names focal. CAP counts foci instead and has no focal choice." |
| lvsi,lvsi_sf_extensive,extension,endopath.lvsi.extensive,noMatch,in_data_not_in_reference,text,,dec_012,"An adjective is not the five-vessel count FIGO 2023 defines substantial by. Left constrained (dec_012)." |
| lvsi,lvsi_sf_suspicious,extension,endopath.lvsi.suspicious,noMatch,in_data_not_in_reference,text,,dec_016,"Pathologist hedge with no home in CAP or FIGO. endopath/1 extension so it survives export uncoerced (dec_016)." |
| lvsi,lvsi_sf_indeterminate,extension,endopath.lvsi.indeterminate,noMatch,in_data_not_in_reference,text,,dec_016,"Equivocal or indeterminate result. Distinct from CAP 'cannot be determined' which asserts non-assessability (dec_016)." |
| lvsi,lvsi_sf_cannot_be_determined,coded,cap_uterus.lvsi.cannot_be_determined,exactMatch,covered,text,,,"Asserted non-assessability. A value, not a blank." |
| lvsi,lvsi_ref_le_4_foci,coded,cap_uterus.lvsi.le_4_foci,noMatch,in_reference_not_in_data,text,lvsi_sf_foci_count,,"CAP requires a focus count. No report states one." |
| lvsi,lvsi_ref_ge_5_foci,coded,cap_uterus.lvsi.ge_5_foci,noMatch,in_reference_not_in_data,text,lvsi_sf_foci_count,,"CAP's five-or-more-foci choice. No report states a count." |
| lvsi,lvsi_ref_substantial,coded,figo_endo_2023.lvsi.substantial,noMatch,in_reference_not_in_data,text,lvsi_sf_foci_count,dec_012,"FIGO 2023 substantial is a count of five or more vessels. Unreachable from this corpus (dec_012)." |
| grade,grd_sf_grade_3,coded,cap_uterus.histologic_grade.3,exactMatch,covered,text,,,"" |
| grade,grd_sf_grade_2,coded,cap_uterus.histologic_grade.2,exactMatch,covered,text,,,"" |
| grade,grd_sf_grade_1,coded,cap_uterus.histologic_grade.1,exactMatch,covered,text,,,"" |
| grade,grd_sf_high_grade,coded,cap_uterus.histologic_grade.high_grade_non_endometrioid,relatedMatch,covered,text,,,"High grade resolves to G3 on the endometrioid branch or the non-endometrioid choice. #36 disambiguates on histotype." |
| grade,grd_sf_low_grade,coded,cap_uterus.histologic_grade.1,broadMatch,covered,text,,,"Low grade groups FIGO G1 and G2." |
| grade,grd_sf_solid_percent,quantity,,,covered,text,,,"Percent non-squamous solid growth. The quantity FIGO grade is cut from (5 / 6-50 / >50)." |
| histotype,hst_sf_endometrioid,coded,who_fgt.histotype.endometrioid,exactMatch,covered,text,,,"" |
| histotype,hst_sf_serous,coded,who_fgt.histotype.serous,exactMatch,covered,text,,,"" |
| histotype,hst_sf_mixed,coded,who_fgt.histotype.mixed,exactMatch,covered,text,,,"" |
| histotype,hst_sf_clear_cell,coded,who_fgt.histotype.clear_cell,exactMatch,covered,text,,,"" |
| histotype,hst_sf_carcinosarcoma,coded,who_fgt.histotype.carcinosarcoma,exactMatch,covered,text,,,"MMMT is the old name for the same entity." |
| histotype,hst_sf_mucinous,coded,icdo3.histotype.8480_3,relatedMatch,covered,text,,,"WHO 2020 absorbed standalone mucinous into endometrioid. ICD-O-3 keeps 8480/3 (#36)." |
| stage,stg_sf_ia,coded,gdc.stage.stage_ia,broadMatch,covered,text,,,"Edition ambiguous between FIGO 1988 and 2009. #35 infers the edition." |
| stage,stg_sf_ib,coded,gdc.stage.stage_ib,broadMatch,covered,text,,,"IB denotes opposite extents under FIGO 1988 and 2009. #35 infers the edition." |
| stage,stg_sf_ic,coded,gdc.stage.stage_ic,exactMatch,covered,text,,,"Stage IC exists only under FIGO 1988. Its presence dates the report." |
| stage,stg_sf_edition_1988_marker,coded,gdc.stage.stage_ic,relatedMatch,covered,text,,,"T1c or IC marker. FIGO 2009 abolished stage IC." |
| stage,stg_sf_t1a,coded,gdc.stage.stage_ia,relatedMatch,covered,text,,,"" |
| stage,stg_sf_t1b,coded,gdc.stage.stage_ib,relatedMatch,covered,text,,,"" |
| stage,stg_sf_t1c,coded,gdc.stage.stage_ic,relatedMatch,covered,text,,,"Exists only under FIGO 1988 / AJCC 6-7." |
| cervical_involvement,cvx_sf_present,polarity,,,covered,text,,,"Cervical stromal involvement present. CAP and FIGO field it." |
| cervical_involvement,cvx_sf_absent,polarity,,,covered,text,,,"" |
| cervical_involvement,cvx_sf_quantity,quantity,,,covered,text,,,"Depth or percent of cervical wall involved. CAP's own element." |
| cervical_involvement,cvx_sf_glandular_only,polarity,,relatedMatch,covered,text,,,"Mucosal or glandular-only involvement. FIGO 1988 IIA named it. FIGO 2009 dropped it from stage II. The distinction is preserved." |
| myometrial_invasion,myo_sf_depth_quantity,quantity,,,covered,text,,,"Invasion depth in mm or cm. The primitive quantity. Numbers stay numbers." |
| myometrial_invasion,myo_sf_percent,quantity,,,covered,text,,,"Invasion as a percent of wall thickness." |
| myometrial_invasion,myo_sf_word_fraction,quantity,,,covered,text,,,"Word fraction of the myometrium invaded." |
| myometrial_invasion,myo_sf_numeric_fraction,quantity,,,covered,text,,,"Numeric fraction of the myometrium invaded." |
| myometrial_invasion,myo_sf_half_or_more,quantity,,,covered,text,,,"Half-or-more invasion category derived from the quantity (dec_011)." |
| myometrial_invasion,myo_sf_less_than_half,quantity,,,covered,text,,,"Less-than-half invasion category (dec_011)." |
| myometrial_invasion,myo_sf_no_invasion,quantity,,,covered,text,,,"Zero invasion. A distinct category, not a blank (dec_011)." |
| nodes,nod_sf_count,quantity,,,covered,text,,,"Positive over examined node count. Numbers stay numbers." |
| nodes,nod_sf_negative,polarity,,,covered,text,,,"" |
| nodes,nod_sf_positive,polarity,,,covered,text,,,"" |
| nodes,nod_sf_none_submitted,polarity,,,covered,text,,,"No regional nodes submitted. A not-applicable gate value." |
| nodes,nod_sf_micromet,coded,ajcc_8.regional_lymph_node_status.pN1mi,exactMatch,covered,text,,,"Micrometastasis. 2 reports (0.4%)." |
| nodes,nod_ref_itc,coded,ajcc_8.regional_lymph_node_status.pN0_i_plus,noMatch,in_reference_not_in_data,text,nod_sf_itc,dec_017,"Isolated tumor cells. No report states them. FIGO 2023 IIIC*i/ii needs the micro-vs-macro-vs-ITC deposit distinction the corpus lacks (dec_017)." |
| molecular_classification,tcga_subtype_pole,coded,tcga_ucec.molecular_classification.pole_ultramutated,exactMatch,covered,structured,,,"From cBioPortal. determined_by_join, not asserted from the report." |
| molecular_classification,tcga_subtype_msi,coded,tcga_ucec.molecular_classification.msi_hypermutated,exactMatch,covered,structured,,,"From cBioPortal. determined_by_join, not asserted from the report." |
| molecular_classification,tcga_subtype_cn_low,coded,tcga_ucec.molecular_classification.copy_number_low,exactMatch,covered,structured,,,"From cBioPortal. determined_by_join, not asserted from the report." |
| molecular_classification,tcga_subtype_cn_high,coded,tcga_ucec.molecular_classification.copy_number_high,exactMatch,covered,structured,,,"From cBioPortal. determined_by_join. Routes to p53abn as a ~95% surrogate (T9 open decision 3)." |
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