source_id,title,authors,publisher,year,url,doi,acquisition,api_query,license,redistribution,sha256,retrieved_date,local_path,derived_from,note
cap_uterus/5.1.0.0,Protocol for the Examination of Specimens from Patients with Carcinoma of the Endometrium,"Turashvili G, Karnezis AN",College of American Pathologists,2024,https://www.cap.org/wp-content/uploads/protocols/Uterus_5.1.0.0.REL.CAPCP.pdf?download=true,,http,,© 2024 College of American Pathologists. All rights reserved.,prohibited,b6be200c83ed4164e58370261bf8e2b1fbcb69ddf3c8834b0a5331423defa0d3,2026-07-10,Uterus_5.1.0.0.REL.CAPCP.pdf,,"Protocol posting date December 2024; CAP required-use date September 2025. The hub document: it reproduces the FIGO 2009 stage list, every AJCC 8th-edition pT/pN/pM category, the WHO histotypes (Note C), and the ProMisE molecular subtypes (Note E). Downloaded bytes are identical to the copy placed on disk before this ticket."
figo_endo/2023,FIGO staging of endometrial cancer: 2023,"Berek JS, Matias-Guiu X, Creutzberg C, Fotopoulou C, Gaffney D, Kehoe S, Lindemann K, Mutch D, Concin N",Journal of Gynecologic Oncology (co-publication),2023,https://ejgo.org/pdf/10.3802/jgo.2023.34.e85,10.3802/jgo.2023.34.e85,http,,Creative Commons Attribution Non-Commercial License (CC BY-NC 4.0),cc-by-nc-4.0,1059cf4c505ef59b96f2710da0a7e474ac13861fa73481d8041a4dc1551be35c,2026-07-10,figo_endo_2023_jgo.pdf,,"Open-access co-publication of the Wiley original (10.1002/ijgo.14923). Page 1 carries no text layer, so page-anchored extractions start at page 2. Host ejgo.org is intermittently unreachable: 1 of 3 fetches failed to connect. Bytes are stable across successful fetches. Every extractions.csv row citing this source_id is page-anchored to THIS PDF's pagination; do not repoint local_path without re-anchoring those rows. The Wiley original is registered separately as figo_endo/2023-wiley: same text, different pagination, and (corrected this session) genuinely open access rather than paywalled."
figo_endo/2023-corrigendum,"Correction to ""FIGO staging of endometrial cancer""",International Federation of Gynecology and Obstetrics,Wiley (Int J Gynaecol Obstet),2024,https://doi.org/10.1002/ijgo.15193,10.1002/ijgo.15193,derived_from,,paywalled,prohibited,,,,figo_endo/2023,"Not obtainable: Wiley returns 403 to automated fetches, the article is not open access, and Europe PMC has no PMC copy. The correction it carries is still recoverable from an open source. It fixes Table 1 footnote f, which misstates the isolated-tumor-cell bound as ""≥0.2 mm"". The open-access JGO copy reproduces that same typo in its footnote ¶ on page 4, but states the threshold correctly in body text on page 7: ""isolated tumor cells are up to 0.2 mm in size and up to 200 cells"". Extract the pN thresholds from page 7, never from the page-4 footnote."
figo_endo/2009,Revised FIGO staging for carcinoma of the endometrium (2009),International Federation of Gynecology and Obstetrics,FIGO,2009,https://igcs.org/wp-content/uploads/2016/10/FIGO-cervix-uterine-vulva-2009.pdf,,http,,Standard journal copyright (Int J Gynaecol Obstet / Elsevier). IGCS hosts the mirror without stating a separate open license.,prohibited,67196348726b3aadbd290dfd19a5a09cb400542fe9cfe0c593e31a92ae3cf65f,2026-07-10,pecorelli_2009_figo.pdf,,"Free IGCS-hosted mirror of the FIGO Committee on Gynecologic Oncology report, Int J Gynaecol Obstet 105(2):103-104, 2009 (Pecorelli S., corresponding author). 2 pages, covers vulva (Table 1), cervix (Table 2), and endometrium (Table 3). Previously recorded as having no stable free URL and transcribed only via CAP; that was wrong, verified by direct fetch."
figo_endo/1988,FIGO stages: 1988 revision (endometrium),International Federation of Gynecology and Obstetrics,FIGO,1988,,,derived_from,,,,,,,abu_rustum/2011,"Abu-Rustum 2011 tabulates the 1988 stages alongside the 2009 stages, which is what the edition-split work needs. Corroborated by the GDC dictionary, whose figo_staging_edition_year enum is exactly [1988, 1995, 2009] and carries no 2023 value."
abu_rustum/2011,The Revised 2009 FIGO Staging System for Endometrial Cancer: Should the 1988 FIGO Stages IA and IB Be Altered?,"Abu-Rustum NR, Zhou Q, Iasonos A, Alektiar KM, Leitao MM Jr, Chi DS, Sonoda Y, Soslow R, Hensley M, Barakat RR",Int J Gynecol Cancer 21(3):511-516,2011,,10.1097/IGC.0b013e31820cc305,manual,,Copyright © 2011 IGCS and ESGO. Unauthorized reproduction of this article is prohibited.,prohibited,5aa762f930080303fdbaeeca8f4ef720bc79ee1bf4a2790ef1d9faa8df80d55b,2026-07-09,abu_rustum_2011_ijgc.pdf,,Elsevier PII S1048891X24038313. No stable unauthenticated download URL; a human obtains it through an institutional subscription and places it at local_path.
ajcc/8,"AJCC Cancer Staging Manual, 8th edition (Corpus Uteri - Carcinoma and Carcinosarcoma)","Amin MB, Edge SB, Greene FL, et al.",Springer,2017,,,derived_from,,book paywalled,prohibited,,,,cap_uterus/5.1.0.0,"The book is paywalled and not fetchable. Every pT, pN and pM category the checklist needs is reproduced verbatim by the CAP protocol (pT on pages 13, 24 and 26; pN including pN1mi and pN0(i+) on pages 14 and 30; pM on pages 14, 30 and 32), which names AJCC 8th edition as its source on pages 13 and 32."
who_fgt/2020,"WHO Classification of Tumours: Female Genital Tumours, 5th edition",WHO Classification of Tumours Editorial Board,International Agency for Research on Cancer,2020,,,derived_from,,book paywalled,prohibited,,,,cap_uterus/5.1.0.0,"The book is paywalled and not fetchable. The histotype value set the checklist needs is reproduced by CAP Note C (page 5) and cross-referenced to the WHO Classification on pages 19, 21, 23, 27, 29 and 33. Codes come from icdo3/3.2."
icdo3/3.2,"International Classification of Diseases for Oncology, 3rd edition, 2nd revision (morphology axis)",World Health Organization,WHO,2019,,,derived_from,,,,,,,gdc/dictionary,"The ICD-O-3 book is not fetched. The morphology axis the join needs is embedded in the GDC dictionary's diagnosis.yaml as a 1162-value enum (property `morphology`, line 2893 at the pinned commit); roughly 20 of those are uterine-corpus morphologies."
gdc/dictionary,GDC Data Dictionary - diagnosis entity schema,National Cancer Institute Genomic Data Commons,NCI GDC,2026,https://raw.githubusercontent.com/NCI-GDC/gdcdictionary/e3b8ce7c4a6b59ba4d3dcd2677b8589c2cf04fe3/src/gdcdictionary/schemas/diagnosis.yaml,,http,,Apache-2.0,permitted,e20f7f111b3f4752e59ae429326011cca9d0fe7900b625485103fa0a84de81db,2026-07-10,gdc_diagnosis.yaml,,"Pinned to commit e3b8ce7c (2026-05-01), not to the `develop` branch head: a branch URL would make the checksum drift every time NCI edits the schema, and a drifting checksum verifies nothing. Carries `morphology` (1162 values), `figo_stage` (33 values) and `figo_staging_edition_year` ([1988, 1995, 2009])."
iccr_endo/5,"Endometrial Cancers Histopathology Reporting Guide, 5th edition v5.1",International Collaboration on Cancer Reporting,ICCR,2024,https://www.iccr-cancer.org/wp-content/uploads/2025/06/ICCR-Endometrial-5th-edn-v5.1-bookmark.pdf,,http,,© 2024 International Collaboration on Cancer Reporting Limited (ICCR).,prohibited,9e32e71601cdb78f87f0c757887b44828312044fd1ea4799e915c9e9a29f7979,2026-07-10,iccr_endometrial_5th_edn_v5.1.pdf,,"Free download, no paywall. 40 pages. The published edition is 5.1 (August 2024), a minor update to the 5th edition that corrects FIGO staging and aligns with the July 2024 WHO update, so the version to cite is 5.1, not a bare ""5th ed""."
promise/2017,"Confirmation of ProMisE: A simple, genomics-based clinical classifier for endometrial cancer","Talhouk A, McConechy MK, Leung S, et al.",Cancer 123(5):802-813,2017,,10.1002/cncr.30496,derived_from,,,,,,,cap_uterus/5.1.0.0,"The four-subtype value set (POLEmut, MMRd, p53abn, NSMP) is reproduced by CAP Note E (pages 5 and 17) and appears throughout the CAP molecular section (pages 6-7, 15, 20-22). The value set is what the taxonomy needs; per-case labels come from tcga_ucec/2013."
tcga_ucec/2013,Integrated genomic characterization of endometrial carcinoma (TCGA-UCEC),The Cancer Genome Atlas Research Network,Nature 497(7447):67-73,2013,https://doi.org/10.1038/nature12113,10.1038/nature12113,derived_from,,public domain (TCGA),permitted,,,,cap_uterus/5.1.0.0,"The four-way value set (POLE ultramutated, MSI hypermutated, copy-number low, copy-number high) is reproduced by CAP Note E as its own checklist element, distinct from the ProMisE element beside it. Per-case labels for these classes are a different question with a different provenance: see cbioportal/ucec_tcga_pub. TCGA data is public domain, acknowledgment only."
cbioportal/ucec_tcga_pub,cBioPortal study ucec_tcga_pub (per-case clinical and molecular attributes),cBioPortal for Cancer Genomics,Memorial Sloan Kettering Cancer Center,2013,https://www.cbioportal.org/study/summary?id=ucec_tcga_pub,,api,https://www.cbioportal.org/api/studies/ucec_tcga_pub/clinical-data?clinicalDataType=PATIENT,public domain (TCGA),permitted,,,,,"Per-case molecular labels arrive from a REST endpoint, not from a pinned file, so there is no sha256 to record: an API response is not an artifact and cannot be checksummed into the ledger. Split out from tcga_ucec/2013 because a value set and the labels drawn against it have different provenance, and #29's evidence rule caught the two being conflated in one row. The fetch and the join are #33 (T7); this row is the provenance home they land in."
fhir_dar/1.0.0,DataAbsentReason CodeSystem,Health Level Seven International,HL7 Terminology (THO),2019,https://terminology.hl7.org/CodeSystem-data-absent-reason.json,,http,,This material derives from the HL7 Terminology (THO). THO is copyright © 1989+ Health Level Seven International and is made available under the CC0 designation.,permitted,b2d6f989da59aea150583e185a5a8a2f2bfdda914ce83e01ef73fffa5bf2079c,2026-07-10,fhir_data_absent_reason.json,,"Canonical URL http://terminology.hl7.org/CodeSystem/data-absent-reason, CodeSystem version 1.0.0, content=complete, 15 codes. The vocabulary for why a field carries no value, replacing the names this project had invented for the same idea. CC0, so unlike the CAP, FIGO, AJCC and WHO standards its bytes carry no redistribution restriction. Not paginated: extractions against it record an empty page and are verified against the whole file."
mccluggage/2023,"FIGO 2023 endometrial cancer staging: too much, too soon?","McCluggage WG, Bosse T, Gilks CB, Howitt BE, McAlpine JN, Nucci MR, Rabban JT, Singh N, Talia KL, Parra-Herran C",Int J Gynecol Cancer,2023,,10.1136/ijgc-2023-004981,manual,,BMJ,prohibited,39db57669055b9c1c33244f157f03137ef7d1da2dcb37c82522ec83b53a45be1,2026-07-08,mccluggage_2023_ijgc.pdf,,"Supporting literature, not a reference standard: the on-disk copy is a browser rendering, so its bytes are not reproducible from a URL and acquisition is `manual`. Cited by open decision 2 (whether ""extensive"" LVSI may be mapped to figo2023.lvsi.substantial)."
huvila/2024,Endometrial Carcinosarcomas are Almost Exclusively of p53abn Molecular Subtype After Exclusion of Mimics,"Huvila J, Jamieson A, Pors J, et al.",Int J Gynecol Pathol 43(5):506-514,2024,,10.1097/PGP.0000000000001010,manual,,,prohibited,eed61628ba9faebf4b0963bb5d5d91408c06165d5a6e5e5de9052cd9e78c3fef,2026-07-08,huvila_2024_ijgp.pdf,,"Supporting literature, not a reference standard: the on-disk copy is a browser rendering of the PMC page, so its bytes are not reproducible from a URL and acquisition is `manual`. Evidence for the carcinosarcoma-to-p53abn route the taxonomy takes."
haltia/2014,FIGO 1988 versus 2009 staging for endometrial carcinoma: a comparative study on prediction of survival and stage distribution according to histologic subtype,"Haltia UM, Butzow R, Leminen A, Loukovaara M",Journal of Gynecologic Oncology,2014,https://ejgo.org/pdf/10.3802/jgo.2014.25.1.30,10.3802/jgo.2014.25.1.30,http,,Creative Commons Attribution Non-Commercial License,cc-by-nc,0be5f7ade656f7e3d18b2cdf4f6af6b71a2881fce18805bbfcd6a57b63e1ad40,2026-07-10,haltia_2014_jgo.pdf,,"Retrospective single-institution comparison of 1988 vs 2009 FIGO staging, restaging 821 cases. Consulted while searching for a complete FIGO 1988 endometrium stage table; it tabulates its own patient distribution by stage rather than reproducing the defining criteria for every 1988 substage, so it corroborates individual stage-definition fragments rather than serving as the primary source."
zhao/2025,"The past, present, and future of FIGO staging of endometrial cancer","Zhao X, Sun F, Leng N, Zhang X, Zhu Y",Journal of Gynecologic Oncology,2025,https://ejgo.org/pdf/10.3802/jgo.2025.36.e105,10.3802/jgo.2025.36.e105,http,,Creative Commons Attribution Non-Commercial License (CC BY-NC 4.0),cc-by-nc-4.0,88ac18730ea936eea6f96328a9e13dd280fd9510c8134e8342432995e09a4f80,2026-07-10,zhao_2025_jgo.pdf,,"Narrative review tracing FIGO endometrial staging from 1951 through 2023. Its Table 1 compares 2009 and 2023 only; the 1988 system is discussed in prose (page 2-4) without a reproduced stage table. Consulted for the same reason as haltia/2014, with the same limitation."
cap_gyn_bmk/1.3.0.0,Template for Reporting Results of Biomarker Testing of Specimens from Patients with Carcinoma of Gynecologic Origin,"Turashvili G, Karnezis AN (primary authors); Crothers B, Giannico G, Deeb K, Hanley K, Ganesan R, Mills A, Buza N",College of American Pathologists,2025,https://www.cap.org/wp-content/uploads/protocols/Gynecologic.Bmk_1.3.0.0.REL_CAPCP.pdf,,http,,Copyright 2025 College of American Pathologists (CAP). All rights reserved. Terms of use at www.cap.org/cancerprotocols.,prohibited,a87e0e9dc18d8cd36ec1cd29bf120a3977c75a46a5825d36e7f251f71a7fd567,2026-07-10,Gynecologic.Bmk_1.3.0.0.REL.CAPCP.pdf,,"Version 1.3.0.0, posting date September 2025. Recommended for clinical care, not required for accreditation. 27 pages."
esgo_estro_esp/2025,ESGO-ESTRO-ESP guidelines for the management of patients with endometrial carcinoma: update 2025,"Concin N, Matias-Guiu X, Cibula D, Colombo N, Creutzberg CL, et al.",The Lancet Oncology,2025,https://guidelines.esgo.org/media/2025/09/ESGO-ESTRO-ESP-Guidelines-for-EC_-LO-July-2025.pdf,10.1016/S1470-2045(25)00167-6,http,,"Copyright 2025 Elsevier Ltd. All rights reserved, including for text and data mining and AI training.",prohibited,664edbf01c9334fa75745cf3f6949dc90bae68fbf07b084a85641dfd6fc0cf6c,2026-07-10,esgo_estro_esp_2025.pdf,,"Lancet Oncol 2025;26:e423-435. Hosted openly by ESGO itself at guidelines.esgo.org despite Elsevier copyright; free to read, not free to redistribute. 13 pages, Policy Review format."
figo_endo/2023-wiley,FIGO staging of endometrial cancer: 2023,"Berek JS, Matias-Guiu X, Creutzberg C, Fotopoulou C, Gaffney D, Kehoe S, Lindemann K, Mutch D, Concin N",International Journal of Gynecology & Obstetrics (Wiley),2023,https://obgyn.onlinelibrary.wiley.com/doi/10.1002/ijgo.14923,10.1002/ijgo.14923,http,,Creative Commons Attribution License (CC BY),cc-by,a5f21e8a22cc3ee5eb703e2bd9542a522cb2b3a046395276341a9c826a21b44b,2026-07-10,berek_2023_ijgo_wiley.pdf,,"The Wiley-hosted primary publication, stated open access on page 1 under CC BY: previously assumed paywalled (figo_endo/2023's old note), which was wrong, corrected by direct inspection. Same text as figo_endo/2023 (the ejgo.org co-publication), different pagination and a clean text layer from page 1, where the ejgo mirror has none. Not yet used as the anchor for any committed extraction; figo_endo/2023 remains the citable source_id until extractions.csv is deliberately re-anchored to this pagination."