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- .gitattributes +25 -0
- data/clustering/model=bioformers__bioformer-8L/min=10/t=0.5_ALL_FIELDS.csv.gz +3 -0
- data/clustering/model=bioformers__bioformer-8L/min=10/t=0.5_FIELD_CLUSTER_METRICS.csv +14 -0
- data/clustering/model=bioformers__bioformer-8L/min=10/t=0.6_ALL_FIELDS.csv.gz +3 -0
- data/clustering/model=bioformers__bioformer-8L/min=10/t=0.6_FIELD_CLUSTER_METRICS.csv +14 -0
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- data/clustering/model=bioformers__bioformer-8L/min=20/t=0.9_FIELD_CLUSTER_METRICS.csv +14 -0
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- data/clustering/model=bioformers__bioformer-8L/min=30/t=0.5_FIELD_CLUSTER_METRICS.csv +14 -0
- data/clustering/model=bioformers__bioformer-8L/min=30/t=0.6_ALL_FIELDS.csv.gz +3 -0
- data/clustering/model=bioformers__bioformer-8L/min=30/t=0.6_FIELD_CLUSTER_METRICS.csv +14 -0
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- data/clustering/model=bioformers__bioformer-8L/min=5/t=0.7_FIELD_CLUSTER_METRICS.csv +14 -0
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- data/clustering/model=bioformers__bioformer-8L/min=5/t=0.8_FIELD_CLUSTER_METRICS.csv +14 -0
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.gitattributes
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data/clustering/model=allenai__scibert_scivocab_uncased/min=5/t=0.7_ALL_FIELDS.csv.gz filter=lfs diff=lfs merge=lfs -text
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data/clustering/model=bioformers__bioformer-8L/min=10/t=0.7_ALL_FIELDS.csv.gz
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data/clustering/model=bioformers__bioformer-8L/min=10/t=0.7_FIELD_CLUSTER_METRICS.csv
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data/clustering/model=bioformers__bioformer-8L/min=10/t=0.8_ALL_FIELDS.csv.gz
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data/clustering/model=bioformers__bioformer-8L/min=10/t=0.8_FIELD_CLUSTER_METRICS.csv
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desalting_process,3720,3669,35,0.17197661101818085,2.5277178670047142,10,0.8
|
| 10 |
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data/clustering/model=bioformers__bioformer-8L/min=10/t=0.9_ALL_FIELDS.csv.gz
ADDED
|
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version https://git-lfs.github.com/spec/v1
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size 1644685
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data/clustering/model=bioformers__bioformer-8L/min=10/t=0.9_FIELD_CLUSTER_METRICS.csv
ADDED
|
@@ -0,0 +1,14 @@
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|
|
|
|
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|
|
|
|
|
| 1 |
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field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
|
| 2 |
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strain,2444,1965,25,0.8137739896774292,1.2408271591230229,10,0.9
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| 7 |
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expression_strain,5677,5421,34,0.2611028850078583,1.670109702550024,10,0.9
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enzyme_name,7975,2906,124,0.23763494193553925,2.345245458566267,10,0.9
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| 9 |
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plasmid,5480,4107,114,0.09253305941820145,2.61380579832329,10,0.9
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desalting_process,3720,3034,79,0.05423152819275856,2.653039001360095,10,0.9
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lysis_buffer,3714,3274,40,0.04899848252534866,2.4504729521630373,10,0.9
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| 13 |
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source_key,8021,7899,93,0.0324920117855072,2.551210367729064,10,0.9
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| 14 |
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elution_buffer,3530,2900,80,0.01885065995156765,2.695277826170774,10,0.9
|
data/clustering/model=bioformers__bioformer-8L/min=2/t=0.5_ALL_FIELDS.csv.gz
ADDED
|
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version https://git-lfs.github.com/spec/v1
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size 1560198
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data/clustering/model=bioformers__bioformer-8L/min=2/t=0.5_FIELD_CLUSTER_METRICS.csv
ADDED
|
@@ -0,0 +1,14 @@
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|
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|
|
|
|
|
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|
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|
|
|
|
|
|
|
| 1 |
+
field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
|
| 2 |
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enzyme_name,7975,7974,2,0.4289400279521942,1.2794644727863338,2,0.5
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| 3 |
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desalting_process,3720,3720,1,,,2,0.5
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| 4 |
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elution_buffer,3530,3530,1,,,2,0.5
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lysis_buffer,3714,3714,1,,,2,0.5
|
| 9 |
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medium_name,4806,4806,1,,,2,0.5
|
| 10 |
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molecular_weight,295,295,1,,,2,0.5
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| 11 |
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organism_source,6292,6291,1,,,2,0.5
|
| 12 |
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plasmid,5480,5480,1,,,2,0.5
|
| 13 |
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source_key,8021,8021,1,,,2,0.5
|
| 14 |
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strain,2444,2444,1,,,2,0.5
|
data/clustering/model=bioformers__bioformer-8L/min=2/t=0.6_ALL_FIELDS.csv.gz
ADDED
|
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version https://git-lfs.github.com/spec/v1
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| 3 |
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size 1562930
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data/clustering/model=bioformers__bioformer-8L/min=2/t=0.6_FIELD_CLUSTER_METRICS.csv
ADDED
|
@@ -0,0 +1,14 @@
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|
|
|
|
|
|
|
| 1 |
+
field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
|
| 2 |
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lysis_buffer,3714,3713,2,0.7149391174316406,0.38312277129626476,2,0.6
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strain,2444,2442,3,0.5285511612892151,1.3682750768926735,2,0.6
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plasmid,5480,5480,2,0.5036197304725647,1.1947752458993386,2,0.6
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elution_buffer,3530,3530,4,0.47634539008140564,0.93194391941934,2,0.6
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enzyme_name,7975,7974,20,0.16269348561763763,2.0800754530172365,2,0.6
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inducer,7889,7889,5,-0.0033008635509759188,0.8952346594864501,2,0.6
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| 13 |
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molecular_weight,295,295,1,,,2,0.6
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| 14 |
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source_key,8021,8021,1,,,2,0.6
|
data/clustering/model=bioformers__bioformer-8L/min=2/t=0.7_ALL_FIELDS.csv.gz
ADDED
|
@@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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| 3 |
+
size 1582073
|
data/clustering/model=bioformers__bioformer-8L/min=2/t=0.7_FIELD_CLUSTER_METRICS.csv
ADDED
|
@@ -0,0 +1,14 @@
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|
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|
|
|
|
| 1 |
+
field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
|
| 2 |
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lysis_buffer,3714,3713,10,0.5278180241584778,1.1298630905778135,2,0.7
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elution_buffer,3530,3528,12,0.18217502534389496,1.492989013235311,2,0.7
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enzyme_name,7975,7963,114,-0.06975390017032623,2.3478973056940524,2,0.7
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| 13 |
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molecular_weight,295,295,1,,,2,0.7
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source_key,8021,8021,1,,,2,0.7
|
data/clustering/model=bioformers__bioformer-8L/min=2/t=0.8_ALL_FIELDS.csv.gz
ADDED
|
@@ -0,0 +1,3 @@
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| 1 |
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version https://git-lfs.github.com/spec/v1
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| 3 |
+
size 1641443
|
data/clustering/model=bioformers__bioformer-8L/min=2/t=0.8_FIELD_CLUSTER_METRICS.csv
ADDED
|
@@ -0,0 +1,14 @@
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|
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|
| 1 |
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field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
|
| 2 |
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inducer,7889,7874,59,0.6508716940879822,1.4521043654321772,2,0.8
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organism_source,6292,6277,93,0.4631325602531433,1.2760038515286216,2,0.8
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strain,2444,2434,60,0.30020228028297424,1.7121340631245408,2,0.8
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lysis_buffer,3714,3705,53,0.26605844497680664,1.482137417053924,2,0.8
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| 8 |
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molecular_weight,295,294,10,0.18039771914482117,1.4202038973592805,2,0.8
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| 9 |
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| 10 |
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| 12 |
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medium_name,4806,4787,146,-0.06182580813765526,1.5819938116264838,2,0.8
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enzyme_name,7975,7861,460,-0.13913843035697937,2.177428176325984,2,0.8
|
data/clustering/model=bioformers__bioformer-8L/min=2/t=0.9_ALL_FIELDS.csv.gz
ADDED
|
@@ -0,0 +1,3 @@
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| 1 |
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version https://git-lfs.github.com/spec/v1
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| 3 |
+
size 1726388
|
data/clustering/model=bioformers__bioformer-8L/min=2/t=0.9_FIELD_CLUSTER_METRICS.csv
ADDED
|
@@ -0,0 +1,14 @@
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|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
| 1 |
+
field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
|
| 2 |
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organism_source,6292,6199,184,0.9616791605949402,0.5624584293204616,2,0.9
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inducer,7889,7808,185,0.588335394859314,1.350126410609476,2,0.9
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induction_temperature,3656,3621,73,0.3014829158782959,0.9982184855962515,2,0.9
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enzyme_name,7975,6235,1334,0.26497021317481995,1.4007342221800998,2,0.9
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| 7 |
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molecular_weight,295,266,33,0.2547828257083893,1.2819329919659535,2,0.9
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| 8 |
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expression_strain,5677,5619,112,0.2129213660955429,1.2517790630958885,2,0.9
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| 9 |
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medium_name,4806,4584,430,0.1799621284008026,1.3185331249917491,2,0.9
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| 10 |
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plasmid,5480,5098,515,0.10540688037872314,1.6590700286882765,2,0.9
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| 11 |
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desalting_process,3720,3524,351,0.09138867259025574,1.4695843239393565,2,0.9
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| 12 |
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elution_buffer,3530,3406,316,0.06699922680854797,1.6100551962006788,2,0.9
|
| 13 |
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lysis_buffer,3714,3622,203,0.058849599212408066,1.276946475913048,2,0.9
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| 14 |
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source_key,8021,8006,235,-0.02426104061305523,1.5396585261391593,2,0.9
|
data/clustering/model=bioformers__bioformer-8L/min=20/t=0.5_ALL_FIELDS.csv.gz
ADDED
|
@@ -0,0 +1,3 @@
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|
|
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|
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|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 3 |
+
size 1560161
|
data/clustering/model=bioformers__bioformer-8L/min=20/t=0.5_FIELD_CLUSTER_METRICS.csv
ADDED
|
@@ -0,0 +1,14 @@
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|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
|
| 2 |
+
desalting_process,3720,3720,1,,,20,0.5
|
| 3 |
+
elution_buffer,3530,3530,1,,,20,0.5
|
| 4 |
+
enzyme_name,7975,7972,1,,,20,0.5
|
| 5 |
+
expression_strain,5677,5677,1,,,20,0.5
|
| 6 |
+
inducer,7889,7889,1,,,20,0.5
|
| 7 |
+
induction_temperature,3656,3656,1,,,20,0.5
|
| 8 |
+
lysis_buffer,3714,3714,1,,,20,0.5
|
| 9 |
+
medium_name,4806,4806,1,,,20,0.5
|
| 10 |
+
molecular_weight,295,295,1,,,20,0.5
|
| 11 |
+
organism_source,6292,6291,1,,,20,0.5
|
| 12 |
+
plasmid,5480,5480,1,,,20,0.5
|
| 13 |
+
source_key,8021,8021,1,,,20,0.5
|
| 14 |
+
strain,2444,2444,1,,,20,0.5
|
data/clustering/model=bioformers__bioformer-8L/min=20/t=0.6_ALL_FIELDS.csv.gz
ADDED
|
@@ -0,0 +1,3 @@
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|
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|
|
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|
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|
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|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 3 |
+
size 1561751
|
data/clustering/model=bioformers__bioformer-8L/min=20/t=0.6_FIELD_CLUSTER_METRICS.csv
ADDED
|
@@ -0,0 +1,14 @@
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|
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|
|
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|
|
|
|
|
|
|
|
| 1 |
+
field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
|
| 2 |
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lysis_buffer,3714,3713,2,0.7149391174316406,0.38312277129626476,20,0.6
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| 3 |
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desalting_process,3720,3719,3,0.6262091994285583,0.5297506235986552,20,0.6
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| 4 |
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induction_temperature,3656,3656,2,0.5875009298324585,1.3215446098942993,20,0.6
|
| 5 |
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medium_name,4806,4790,2,0.4549894332885742,1.826338730267641,20,0.6
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| 6 |
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organism_source,6292,6280,2,0.37994393706321716,2.056197049107056,20,0.6
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| 7 |
+
enzyme_name,7975,7945,4,0.25419294834136963,3.101018624031254,20,0.6
|
| 8 |
+
elution_buffer,3530,3508,1,,,20,0.6
|
| 9 |
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strain,2444,2434,1,,,20,0.6
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data/clustering/model=bioformers__bioformer-8L/min=20/t=0.7_ALL_FIELDS.csv.gz
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size 1577101
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data/clustering/model=bioformers__bioformer-8L/min=20/t=0.7_FIELD_CLUSTER_METRICS.csv
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|
| 1 |
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field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
|
| 2 |
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source_key,8021,8021,1,,,20,0.7
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data/clustering/model=bioformers__bioformer-8L/min=20/t=0.8_ALL_FIELDS.csv.gz
ADDED
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size 1614162
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data/clustering/model=bioformers__bioformer-8L/min=20/t=0.8_FIELD_CLUSTER_METRICS.csv
ADDED
|
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|
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field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
|
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source_key,8021,7989,1,,,20,0.8
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data/clustering/model=bioformers__bioformer-8L/min=20/t=0.9_ALL_FIELDS.csv.gz
ADDED
|
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size 1605852
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data/clustering/model=bioformers__bioformer-8L/min=20/t=0.9_FIELD_CLUSTER_METRICS.csv
ADDED
|
@@ -0,0 +1,14 @@
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field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
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enzyme_name,7975,2020,44,0.23787984251976013,2.660095628820925,20,0.9
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data/clustering/model=bioformers__bioformer-8L/min=30/t=0.5_ALL_FIELDS.csv.gz
ADDED
|
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version https://git-lfs.github.com/spec/v1
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size 1560161
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data/clustering/model=bioformers__bioformer-8L/min=30/t=0.5_FIELD_CLUSTER_METRICS.csv
ADDED
|
@@ -0,0 +1,14 @@
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|
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field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
|
| 2 |
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molecular_weight,295,295,1,,,30,0.5
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source_key,8021,8021,1,,,30,0.5
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strain,2444,2444,1,,,30,0.5
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data/clustering/model=bioformers__bioformer-8L/min=30/t=0.6_ALL_FIELDS.csv.gz
ADDED
|
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version https://git-lfs.github.com/spec/v1
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size 1561024
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data/clustering/model=bioformers__bioformer-8L/min=30/t=0.6_FIELD_CLUSTER_METRICS.csv
ADDED
|
@@ -0,0 +1,14 @@
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| 1 |
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field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
|
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strain,2444,2434,1,,,30,0.6
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data/clustering/model=bioformers__bioformer-8L/min=30/t=0.7_ALL_FIELDS.csv.gz
ADDED
|
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| 1 |
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version https://git-lfs.github.com/spec/v1
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size 1571329
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data/clustering/model=bioformers__bioformer-8L/min=30/t=0.7_FIELD_CLUSTER_METRICS.csv
ADDED
|
@@ -0,0 +1,14 @@
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|
| 1 |
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field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
|
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induction_temperature,3656,3642,2,0.7311743497848511,0.488285757220045,30,0.7
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desalting_process,3720,3664,3,0.4050860106945038,2.1134841217204836,30,0.7
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plasmid,5480,5428,3,0.3539765477180481,2.2509697296973923,30,0.7
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inducer,7889,7850,5,0.12988336384296417,2.8272199532430853,30,0.7
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enzyme_name,7975,7825,15,0.03896830603480339,4.3828826907513045,30,0.7
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| 11 |
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elution_buffer,3530,3458,1,,,30,0.7
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| 12 |
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lysis_buffer,3714,3658,1,,,30,0.7
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| 13 |
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molecular_weight,295,295,1,,,30,0.7
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| 14 |
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source_key,8021,8021,1,,,30,0.7
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data/clustering/model=bioformers__bioformer-8L/min=30/t=0.8_ALL_FIELDS.csv.gz
ADDED
|
@@ -0,0 +1,3 @@
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| 1 |
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version https://git-lfs.github.com/spec/v1
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| 3 |
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size 1605741
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data/clustering/model=bioformers__bioformer-8L/min=30/t=0.8_FIELD_CLUSTER_METRICS.csv
ADDED
|
@@ -0,0 +1,14 @@
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|
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|
| 1 |
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field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
|
| 2 |
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inducer,7889,7735,7,0.7055988907814026,1.939096311918662,30,0.8
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lysis_buffer,3714,3579,5,0.4764579236507416,2.564461387084605,30,0.8
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induction_temperature,3656,3591,6,0.43210306763648987,1.5159507909233518,30,0.8
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strain,2444,2269,9,0.3546215891838074,2.4820132916281383,30,0.8
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elution_buffer,3530,3374,10,0.20632404088974,2.8691991595225783,30,0.8
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desalting_process,3720,3592,14,0.20399931073188782,2.928785499624179,30,0.8
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| 9 |
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plasmid,5480,5248,21,0.04311712086200714,3.880653072433622,30,0.8
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enzyme_name,7975,6936,50,-0.05541257560253143,4.305211529755006,30,0.8
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| 12 |
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expression_strain,5677,5554,9,-0.09135869145393372,1.6754101335222045,30,0.8
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| 13 |
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molecular_weight,295,264,1,,,30,0.8
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source_key,8021,7989,1,,,30,0.8
|
data/clustering/model=bioformers__bioformer-8L/min=30/t=0.9_ALL_FIELDS.csv.gz
ADDED
|
@@ -0,0 +1,3 @@
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| 1 |
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version https://git-lfs.github.com/spec/v1
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| 3 |
+
size 1581989
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data/clustering/model=bioformers__bioformer-8L/min=30/t=0.9_FIELD_CLUSTER_METRICS.csv
ADDED
|
@@ -0,0 +1,14 @@
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|
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|
| 1 |
+
field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
|
| 2 |
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organism_source,6292,5266,15,0.9854954481124878,0.2851689912562612,30,0.9
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strain,2444,1733,8,0.8470679521560669,1.343804212033218,30,0.9
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inducer,7889,7293,20,0.6506964564323425,2.765338611630116,30,0.9
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molecular_weight,295,163,2,0.44750261306762695,1.6975642469527275,30,0.9
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induction_temperature,3656,3340,8,0.44697147607803345,0.987109276264409,30,0.9
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enzyme_name,7975,1626,24,0.2817782461643219,2.421233665073658,30,0.9
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expression_strain,5677,5257,16,0.2769206166267395,1.7309105675607224,30,0.9
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| 9 |
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medium_name,4806,3203,29,0.12058119475841522,2.9665202956082144,30,0.9
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plasmid,5480,3403,39,0.114617258310318,3.002515715749988,30,0.9
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| 11 |
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lysis_buffer,3714,3015,10,0.07980635017156601,3.392229023562755,30,0.9
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| 12 |
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desalting_process,3720,2667,27,0.07133529335260391,3.254077555718731,30,0.9
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| 13 |
+
source_key,8021,7610,35,0.05901448801159859,3.643503475536609,30,0.9
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| 14 |
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elution_buffer,3530,2487,26,-0.005669980775564909,3.459764998183402,30,0.9
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data/clustering/model=bioformers__bioformer-8L/min=5/t=0.5_ALL_FIELDS.csv.gz
ADDED
|
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version https://git-lfs.github.com/spec/v1
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oid sha256:933234018e90239b9ee07af14b60f099699c13659a211587fa2dc799eb03fd87
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| 3 |
+
size 1560161
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data/clustering/model=bioformers__bioformer-8L/min=5/t=0.5_FIELD_CLUSTER_METRICS.csv
ADDED
|
@@ -0,0 +1,14 @@
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|
|
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|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
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| 2 |
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desalting_process,3720,3720,1,,,5,0.5
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elution_buffer,3530,3530,1,,,5,0.5
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enzyme_name,7975,7972,1,,,5,0.5
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expression_strain,5677,5677,1,,,5,0.5
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inducer,7889,7889,1,,,5,0.5
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induction_temperature,3656,3656,1,,,5,0.5
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lysis_buffer,3714,3714,1,,,5,0.5
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medium_name,4806,4806,1,,,5,0.5
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| 10 |
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molecular_weight,295,295,1,,,5,0.5
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organism_source,6292,6291,1,,,5,0.5
|
| 12 |
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plasmid,5480,5480,1,,,5,0.5
|
| 13 |
+
source_key,8021,8021,1,,,5,0.5
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| 14 |
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strain,2444,2444,1,,,5,0.5
|
data/clustering/model=bioformers__bioformer-8L/min=5/t=0.6_ALL_FIELDS.csv.gz
ADDED
|
@@ -0,0 +1,3 @@
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|
|
|
|
|
|
|
|
|
|
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| 1 |
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version https://git-lfs.github.com/spec/v1
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| 3 |
+
size 1562773
|
data/clustering/model=bioformers__bioformer-8L/min=5/t=0.6_FIELD_CLUSTER_METRICS.csv
ADDED
|
@@ -0,0 +1,14 @@
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
| 1 |
+
field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
|
| 2 |
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lysis_buffer,3714,3713,2,0.7149391174316406,0.38312277129626476,5,0.6
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desalting_process,3720,3719,3,0.6262091994285583,0.5297506235986552,5,0.6
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strain,2444,2440,2,0.5890939235687256,0.5220098785323762,5,0.6
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| 5 |
+
induction_temperature,3656,3656,2,0.5875009298324585,1.3215446098942993,5,0.6
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| 6 |
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elution_buffer,3530,3530,3,0.5096814632415771,0.9128937844311059,5,0.6
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| 7 |
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medium_name,4806,4804,6,0.38017725944519043,1.3072663364990722,5,0.6
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inducer,7889,7887,3,0.3557615876197815,1.2483121294170345,5,0.6
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| 9 |
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organism_source,6292,6290,5,0.3246673345565796,2.016319682225972,5,0.6
|
| 10 |
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enzyme_name,7975,7965,10,0.21475757658481598,2.8319730515798085,5,0.6
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| 11 |
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expression_strain,5677,5672,1,,,5,0.6
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| 12 |
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molecular_weight,295,295,1,,,5,0.6
|
| 13 |
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plasmid,5480,5478,1,,,5,0.6
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| 14 |
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source_key,8021,8021,1,,,5,0.6
|
data/clustering/model=bioformers__bioformer-8L/min=5/t=0.7_ALL_FIELDS.csv.gz
ADDED
|
@@ -0,0 +1,3 @@
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|
|
|
|
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|
|
|
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| 1 |
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version https://git-lfs.github.com/spec/v1
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| 3 |
+
size 1581326
|
data/clustering/model=bioformers__bioformer-8L/min=5/t=0.7_FIELD_CLUSTER_METRICS.csv
ADDED
|
@@ -0,0 +1,14 @@
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
|
| 2 |
+
lysis_buffer,3714,3711,5,0.5507918000221252,1.3636381398705133,5,0.7
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| 3 |
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induction_temperature,3656,3654,5,0.4207448959350586,0.9558708093395929,5,0.7
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| 4 |
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expression_strain,5677,5664,6,0.3934195935726166,1.8975776902587642,5,0.7
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| 5 |
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strain,2444,2432,10,0.3200376331806183,2.1180449548377047,5,0.7
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| 6 |
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desalting_process,3720,3716,11,0.21291004121303558,2.1114014155787633,5,0.7
|
| 7 |
+
plasmid,5480,5475,13,0.21220676600933075,2.155646306532552,5,0.7
|
| 8 |
+
elution_buffer,3530,3524,8,0.21009083092212677,1.6738716746273976,5,0.7
|
| 9 |
+
medium_name,4806,4789,26,0.13568684458732605,2.1025627219083844,5,0.7
|
| 10 |
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inducer,7889,7874,10,0.1284339427947998,2.268823051431932,5,0.7
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| 11 |
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organism_source,6292,6283,23,0.09911264479160309,1.8760716067481988,5,0.7
|
| 12 |
+
enzyme_name,7975,7935,62,-0.0060180071741342545,3.1957609285745634,5,0.7
|
| 13 |
+
molecular_weight,295,295,1,,,5,0.7
|
| 14 |
+
source_key,8021,8021,1,,,5,0.7
|
data/clustering/model=bioformers__bioformer-8L/min=5/t=0.8_ALL_FIELDS.csv.gz
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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oid sha256:0c09a651fbe550c471ee27fe32cd970a9b4b852273e2a9f137a72394b8642e6b
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| 3 |
+
size 1635401
|
data/clustering/model=bioformers__bioformer-8L/min=5/t=0.8_FIELD_CLUSTER_METRICS.csv
ADDED
|
@@ -0,0 +1,14 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
|
| 2 |
+
inducer,7889,7852,30,0.6627641916275024,2.044325263695298,5,0.8
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| 3 |
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organism_source,6292,6208,53,0.46414998173713684,1.5680341956960846,5,0.8
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| 4 |
+
source_key,8021,8017,5,0.42416778206825256,1.0850744082237114,5,0.8
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| 5 |
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induction_temperature,3656,3641,18,0.4063742756843567,1.9196639352981768,5,0.8
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| 6 |
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lysis_buffer,3714,3692,27,0.33277463912963867,2.0151115617595123,5,0.8
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| 7 |
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strain,2444,2398,30,0.3316309452056885,2.191884426411687,5,0.8
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| 8 |
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molecular_weight,295,291,5,0.2541064918041229,1.8278209302431137,5,0.8
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| 9 |
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desalting_process,3720,3689,53,0.13984432816505432,2.169222040534551,5,0.8
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| 10 |
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elution_buffer,3530,3510,39,0.11581364274024963,1.8924393232317045,5,0.8
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| 11 |
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plasmid,5480,5444,83,0.004260723944753408,2.6839459834769994,5,0.8
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| 12 |
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medium_name,4806,4733,78,-0.028180163353681564,2.1051961499962877,5,0.8
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| 13 |
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enzyme_name,7975,7603,217,-0.10721132159233093,2.992378178619993,5,0.8
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| 14 |
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expression_strain,5677,5636,26,-0.11020860075950623,1.6662297078273232,5,0.8
|
data/clustering/model=bioformers__bioformer-8L/min=5/t=0.9_ALL_FIELDS.csv.gz
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
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oid sha256:bce857b878808045810251310bfeb8321df128770fd0bd541c9267ca20bc595b
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| 3 |
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size 1681222
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