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- .gitattributes +25 -0
- data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=10/t=0.5_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=10/t=0.5_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=10/t=0.6_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=10/t=0.6_FIELD_CLUSTER_METRICS.csv +13 -13
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- data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=10/t=0.7_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=10/t=0.8_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=10/t=0.8_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=10/t=0.9_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=10/t=0.9_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=2/t=0.5_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=2/t=0.5_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=2/t=0.6_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=2/t=0.6_FIELD_CLUSTER_METRICS.csv +13 -13
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- data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=2/t=0.8_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=2/t=0.9_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=2/t=0.9_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=20/t=0.5_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=20/t=0.5_FIELD_CLUSTER_METRICS.csv +13 -13
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- data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=20/t=0.6_FIELD_CLUSTER_METRICS.csv +13 -13
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- data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=20/t=0.7_FIELD_CLUSTER_METRICS.csv +13 -13
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- data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=30/t=0.6_FIELD_CLUSTER_METRICS.csv +13 -13
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- data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=30/t=0.7_FIELD_CLUSTER_METRICS.csv +13 -13
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- data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=30/t=0.8_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=30/t=0.9_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=30/t=0.9_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=5/t=0.5_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=5/t=0.5_FIELD_CLUSTER_METRICS.csv +13 -13
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- data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=5/t=0.6_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=5/t=0.7_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=5/t=0.7_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=5/t=0.8_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=5/t=0.8_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=5/t=0.9_ALL_FIELDS.csv.gz +2 -2
.gitattributes
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data/clustering/model=cambridgeltl__SapBERT-from-PubMedBERT-fulltext/min=5/t=0.7_ALL_FIELDS.csv.gz filter=lfs diff=lfs merge=lfs -text
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desalting_process,
|
| 11 |
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medium_name,
|
| 12 |
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elution_buffer,
|
| 13 |
-
source_key,
|
| 14 |
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lysis_buffer,
|
|
|
|
| 1 |
field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
|
| 2 |
+
organism_source,9834,9394,84,0.9586203098297119,0.6932934264603977,5,0.7
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strain,3834,2974,83,0.6667201519012451,0.9786764939561241,5,0.7
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inducer,11954,11420,207,0.5662036538124084,1.993024168821524,5,0.7
|
| 5 |
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induction_temperature,5383,5121,60,0.43788406252861023,1.1674032734295239,5,0.7
|
| 6 |
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molecular_weight,495,201,23,0.4239448308944702,1.2955572225474554,5,0.7
|
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expression_strain,8268,7618,147,0.3990951478481293,1.3734072972482345,5,0.7
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plasmid,8217,4936,325,0.29726678133010864,1.591988152947234,5,0.7
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enzyme_name,12099,5207,514,0.2843882441520691,1.7491814450514838,5,0.7
|
| 10 |
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desalting_process,5540,3538,242,0.1878713220357895,1.9084698094456174,5,0.7
|
| 11 |
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medium_name,7644,6011,312,0.13277573883533478,2.0395695365561,5,0.7
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elution_buffer,5198,3856,269,0.12419383227825165,2.1418327689374417,5,0.7
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source_key,12179,11709,650,0.04634162783622742,2.0152894973803885,5,0.7
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| 14 |
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lysis_buffer,5625,4723,238,0.01871468871831894,2.2440021032823334,5,0.7
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data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=5/t=0.8_ALL_FIELDS.csv.gz
CHANGED
|
@@ -1,3 +1,3 @@
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size 2462086
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data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=5/t=0.8_FIELD_CLUSTER_METRICS.csv
CHANGED
|
@@ -1,14 +1,14 @@
|
|
| 1 |
field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
|
| 2 |
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organism_source,
|
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strain,
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molecular_weight,
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induction_temperature,
|
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source_key,
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inducer,
|
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enzyme_name,
|
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|
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| 11 |
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expression_strain,
|
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|
| 13 |
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|
| 14 |
-
lysis_buffer,
|
|
|
|
| 1 |
field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
|
| 2 |
+
organism_source,9834,9314,89,0.9897955060005188,0.40416840727744713,5,0.8
|
| 3 |
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strain,3834,2732,72,0.8750402331352234,0.5323326288557207,5,0.8
|
| 4 |
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molecular_weight,495,125,19,0.8459687232971191,0.5993856121140724,5,0.8
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induction_temperature,5383,4982,57,0.8358964323997498,0.5692409919607223,5,0.8
|
| 6 |
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source_key,12179,7467,859,0.7220664024353027,0.8749807766114311,5,0.8
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inducer,11954,10827,231,0.6547908186912537,1.6242625752307254,5,0.8
|
| 8 |
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enzyme_name,12099,2263,279,0.6237987875938416,0.9989491815051269,5,0.8
|
| 9 |
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desalting_process,5540,1986,212,0.5910636186599731,1.1164249349800648,5,0.8
|
| 10 |
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plasmid,8217,3480,230,0.5902198553085327,0.9479290142248349,5,0.8
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expression_strain,8268,7180,158,0.4972711205482483,0.8517285852905733,5,0.8
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medium_name,7644,4360,295,0.40150269865989685,1.3212613564754254,5,0.8
|
| 13 |
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elution_buffer,5198,2310,209,0.3961767256259918,1.3378489226099453,5,0.8
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| 14 |
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lysis_buffer,5625,3163,266,0.27621254324913025,1.617919922001649,5,0.8
|
data/clustering/model=kamalkraj__BioSimCSE-BioLinkBERT-BASE/min=5/t=0.9_ALL_FIELDS.csv.gz
CHANGED
|
@@ -1,3 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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oid sha256:
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|
| 1 |
version https://git-lfs.github.com/spec/v1
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+
oid sha256:7e4204fcb1757a984e118b5aa1eba1e367c689df5bf59304fb146063423a23fc
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size 2370636
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