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- .gitattributes +25 -0
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=10/t=0.5_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=10/t=0.5_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=10/t=0.6_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=10/t=0.6_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=10/t=0.7_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=10/t=0.7_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=10/t=0.8_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=10/t=0.8_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=10/t=0.9_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=10/t=0.9_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=2/t=0.5_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=2/t=0.5_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=2/t=0.6_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=2/t=0.6_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=2/t=0.7_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=2/t=0.7_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=2/t=0.8_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=2/t=0.8_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=2/t=0.9_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=2/t=0.9_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=20/t=0.5_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=20/t=0.5_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=20/t=0.6_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=20/t=0.6_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=20/t=0.7_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=20/t=0.7_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=20/t=0.8_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=20/t=0.8_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=20/t=0.9_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=20/t=0.9_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=30/t=0.5_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=30/t=0.5_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=30/t=0.6_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=30/t=0.6_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=30/t=0.7_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=30/t=0.7_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=30/t=0.8_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=30/t=0.8_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=30/t=0.9_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=30/t=0.9_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=5/t=0.5_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=5/t=0.5_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=5/t=0.6_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=5/t=0.6_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=5/t=0.7_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=5/t=0.7_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=5/t=0.8_ALL_FIELDS.csv.gz +2 -2
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=5/t=0.8_FIELD_CLUSTER_METRICS.csv +13 -13
- data/clustering/model=NeuML__pubmedbert-base-embeddings/min=5/t=0.9_ALL_FIELDS.csv.gz +2 -2
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medium_name,7644,7153,225,0.040841925889253616,2.138664139453662,5,0.7
|
| 13 |
+
desalting_process,5540,5285,156,-0.021950973197817802,2.471027340645969,5,0.7
|
| 14 |
+
elution_buffer,5198,5048,149,-0.05791900306940079,2.2865845299518153,5,0.7
|
data/clustering/model=NeuML__pubmedbert-base-embeddings/min=5/t=0.8_ALL_FIELDS.csv.gz
CHANGED
|
@@ -1,3 +1,3 @@
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
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| 2 |
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oid sha256:
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| 3 |
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size
|
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|
| 1 |
version https://git-lfs.github.com/spec/v1
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oid sha256:b05f6a1c5a353838d57e7f5aa80e2aac55774c65c817fd2f547fb261c69ec242
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| 3 |
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size 2595713
|
data/clustering/model=NeuML__pubmedbert-base-embeddings/min=5/t=0.8_FIELD_CLUSTER_METRICS.csv
CHANGED
|
@@ -1,14 +1,14 @@
|
|
| 1 |
field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
|
| 2 |
-
organism_source,
|
| 3 |
-
|
| 4 |
-
|
| 5 |
-
|
| 6 |
-
|
| 7 |
-
|
| 8 |
-
plasmid,
|
| 9 |
-
|
| 10 |
-
|
| 11 |
-
desalting_process,
|
| 12 |
-
|
| 13 |
-
|
| 14 |
-
source_key,
|
|
|
|
| 1 |
field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
|
| 2 |
+
organism_source,9834,9340,88,0.9368722438812256,0.3937709444869219,5,0.8
|
| 3 |
+
inducer,11954,11598,114,0.6096725463867188,1.8174811253394179,5,0.8
|
| 4 |
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strain,3834,3228,72,0.5731325149536133,1.1530990348346448,5,0.8
|
| 5 |
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enzyme_name,12099,4414,451,0.48379701375961304,1.2906890754806173,5,0.8
|
| 6 |
+
induction_temperature,5383,5141,46,0.4491744935512543,1.3720869180322595,5,0.8
|
| 7 |
+
expression_strain,8268,7935,95,0.41298651695251465,1.7339211252411244,5,0.8
|
| 8 |
+
plasmid,8217,4991,260,0.3145831525325775,1.5375510941258081,5,0.8
|
| 9 |
+
medium_name,7644,6257,274,0.15979766845703125,1.8752252957491684,5,0.8
|
| 10 |
+
molecular_weight,495,425,22,0.1351013332605362,2.0026006130416776,5,0.8
|
| 11 |
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desalting_process,5540,4642,226,0.0035786216612905264,2.315476695967539,5,0.8
|
| 12 |
+
elution_buffer,5198,4624,193,-0.03157674893736839,2.345602868217775,5,0.8
|
| 13 |
+
lysis_buffer,5625,5051,187,-0.03582679107785225,2.17319799885268,5,0.8
|
| 14 |
+
source_key,12179,12155,98,-0.0664583295583725,2.335495687717003,5,0.8
|
data/clustering/model=NeuML__pubmedbert-base-embeddings/min=5/t=0.9_ALL_FIELDS.csv.gz
CHANGED
|
@@ -1,3 +1,3 @@
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
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| 2 |
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oid sha256:
|
| 3 |
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size
|
|
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:35ef07bfb0f1dfe807cb8863ef3925656f000c28bedf3d842d1adda1738b6ed4
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| 3 |
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size 2493097
|