Spaces:
Running
Running
Rigor pass: exact terminal-match negatives (30 remodeled/verified), full Pfly metric panel, functional-AUROC finding, Data-tab UI (stats-above-schema + collapsible), IgE copy fix, Pfly training option (TF/dlomix bundled)
7beab26 verified | { | |
| "nContexts": 40, | |
| "contexts": [ | |
| "H10", | |
| "H11A", | |
| "H11B", | |
| "H11C", | |
| "H12A", | |
| "H12B", | |
| "H1A", | |
| "H1B", | |
| "H2A", | |
| "H2B", | |
| "H2C", | |
| "H2D", | |
| "H2E", | |
| "H3", | |
| "H4A", | |
| "H4B", | |
| "H4C", | |
| "H4D", | |
| "H4E", | |
| "H4F", | |
| "H4G", | |
| "H4H", | |
| "H4I", | |
| "H4J", | |
| "H4K", | |
| "H4L", | |
| "H5A", | |
| "H5B", | |
| "H5C", | |
| "H5D", | |
| "H6A", | |
| "H6B", | |
| "H6C", | |
| "H6D", | |
| "H6E", | |
| "H6F", | |
| "H6G", | |
| "H7", | |
| "H8", | |
| "H9" | |
| ], | |
| "featureSet": { | |
| "friedmanP": 1.5686423107481302e-14, | |
| "bestByRank": "esm2_phys", | |
| "meanRanks": { | |
| "esm2": 3.225, | |
| "esm2_phys": 4.125, | |
| "pep_phys": 3.725, | |
| "pepbert": 2.425, | |
| "phys": 1.5 | |
| }, | |
| "treatments": [ | |
| "esm2", | |
| "esm2_phys", | |
| "pep_phys", | |
| "pepbert", | |
| "phys" | |
| ] | |
| }, | |
| "model": { | |
| "friedmanP": 1.0498068647554956e-13, | |
| "bestByRank": "xgb", | |
| "meanRanks": { | |
| "mlp": 1.845, | |
| "rf": 1.715, | |
| "xgb": 2.44 | |
| }, | |
| "treatments": [ | |
| "mlp", | |
| "rf", | |
| "xgb" | |
| ] | |
| }, | |
| "negatives": { | |
| "per_seed_ci": { | |
| "24": { | |
| "mean": 0.838499878507436, | |
| "lo": 0.8098043577202112, | |
| "hi": 0.8637766069608191, | |
| "n": 35 | |
| }, | |
| "43": { | |
| "mean": 0.845506965543993, | |
| "lo": 0.8225850281989133, | |
| "hi": 0.8668863314209594, | |
| "n": 33 | |
| }, | |
| "101": { | |
| "mean": 0.8363468949323603, | |
| "lo": 0.8103926582126154, | |
| "hi": 0.8600088974503667, | |
| "n": 32 | |
| } | |
| }, | |
| "seed_spread_ci": { | |
| "mean": 0.04436880078651305, | |
| "lo": 0.024539614614609764, | |
| "hi": 0.06932760181852675, | |
| "n": 35 | |
| }, | |
| "method": "k-mer only; two-method Wilcoxon N/A (UniZyme demoted)" | |
| }, | |
| "splitTier": { | |
| "cluster50": { | |
| "mean": 0.8609000849396058, | |
| "lo": 0.8524143870952053, | |
| "hi": 0.8697321773498207, | |
| "n": 95 | |
| }, | |
| "cluster90": { | |
| "mean": 0.8667689116844381, | |
| "lo": 0.8578079978284309, | |
| "hi": 0.8754558674082576, | |
| "n": 115 | |
| }, | |
| "peptide": { | |
| "mean": 0.9248525127515336, | |
| "lo": 0.9188146094701443, | |
| "hi": 0.9304094611431953, | |
| "n": 200 | |
| }, | |
| "protein": { | |
| "mean": 0.8546209094964379, | |
| "lo": 0.8437183459771185, | |
| "hi": 0.8650433896952755, | |
| "n": 172 | |
| } | |
| } | |
| } |