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| { | |
| "ok": true, | |
| "cached": true, | |
| "query": "Compute the IR spectrum of formaldehyde using the TBLite calculator.", | |
| "molecule": "formaldehyde", | |
| "formula": "CH2O", | |
| "smiles": "C=O", | |
| "resolved": "formaldehyde", | |
| "calculator": "TBLite", | |
| "task": "ir", | |
| "intent": { | |
| "task_type": "ir", | |
| "required_output": "ir_spectrum", | |
| "calculator": "TBLite", | |
| "target_molecules": [ | |
| "formaldehyde" | |
| ] | |
| }, | |
| "structure": { | |
| "atoms": [ | |
| { | |
| "el": "C", | |
| "x": -0.0333, | |
| "y": 0.0058, | |
| "z": 0.0002 | |
| }, | |
| { | |
| "el": "O", | |
| "x": 1.1679, | |
| "y": -0.2043, | |
| "z": -0.0078 | |
| }, | |
| { | |
| "el": "H", | |
| "x": -0.7291, | |
| "y": -0.8258, | |
| "z": 0.0108 | |
| }, | |
| { | |
| "el": "H", | |
| "x": -0.4055, | |
| "y": 1.0243, | |
| "z": -0.0032 | |
| } | |
| ], | |
| "natoms": 4 | |
| }, | |
| "steps": [ | |
| { | |
| "tool": "molecule_name_to_smiles", | |
| "status": "success", | |
| "summary": "formaldehyde → SMILES C=O · CH2O (PubChem)", | |
| "detail": { | |
| "name": "formaldehyde", | |
| "resolved": "formaldehyde", | |
| "smiles": "C=O", | |
| "formula": "CH2O", | |
| "cid": 712, | |
| "source": "PubChem" | |
| } | |
| }, | |
| { | |
| "tool": "smiles_to_coordinate_file", | |
| "status": "success", | |
| "summary": "built 3D structure · 4 atoms", | |
| "detail": { | |
| "smiles": "C=O", | |
| "natoms": 4 | |
| } | |
| }, | |
| { | |
| "tool": "run_ase", | |
| "status": "success", | |
| "summary": "vibrational + IR analysis success", | |
| "detail": { | |
| "driver": "ir", | |
| "calculator": "TBLite", | |
| "method": "GFN2-xTB" | |
| } | |
| } | |
| ], | |
| "result": { | |
| "kind": "ir", | |
| "frequencies": [ | |
| { | |
| "cm1": -3.2, | |
| "imaginary": true | |
| }, | |
| { | |
| "cm1": -0.5, | |
| "imaginary": true | |
| }, | |
| { | |
| "cm1": -0.1, | |
| "imaginary": true | |
| }, | |
| { | |
| "cm1": 1.3, | |
| "imaginary": false | |
| }, | |
| { | |
| "cm1": 18.6, | |
| "imaginary": false | |
| }, | |
| { | |
| "cm1": 22.2, | |
| "imaginary": false | |
| }, | |
| { | |
| "cm1": 1086.0, | |
| "imaginary": false | |
| }, | |
| { | |
| "cm1": 1202.6, | |
| "imaginary": false | |
| }, | |
| { | |
| "cm1": 1488.9, | |
| "imaginary": false | |
| }, | |
| { | |
| "cm1": 1806.3, | |
| "imaginary": false | |
| }, | |
| { | |
| "cm1": 2792.2, | |
| "imaginary": false | |
| }, | |
| { | |
| "cm1": 2838.3, | |
| "imaginary": false | |
| } | |
| ], | |
| "ir": { | |
| "modes": [ | |
| { | |
| "cm1": 1.3, | |
| "intensity": 0.0518 | |
| }, | |
| { | |
| "cm1": 18.6, | |
| "intensity": 0.3885 | |
| }, | |
| { | |
| "cm1": 22.2, | |
| "intensity": 0.0355 | |
| }, | |
| { | |
| "cm1": 1086.0, | |
| "intensity": 0.0314 | |
| }, | |
| { | |
| "cm1": 1202.6, | |
| "intensity": 0.6199 | |
| }, | |
| { | |
| "cm1": 1488.9, | |
| "intensity": 0.0012 | |
| }, | |
| { | |
| "cm1": 1806.3, | |
| "intensity": 3.573 | |
| }, | |
| { | |
| "cm1": 2792.2, | |
| "intensity": 2.7756 | |
| }, | |
| { | |
| "cm1": 2838.3, | |
| "intensity": 1.6879 | |
| } | |
| ] | |
| } | |
| }, | |
| "verified": true | |
| } |