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"""Tests for mosaic_core.core_functions module."""
import os
import tempfile
from pathlib import Path
from unittest.mock import patch, MagicMock
import numpy as np
import pandas as pd
import pytest
from mosaic_core.core_functions import (
pick_text_column,
list_text_columns,
slugify,
clean_label,
preprocess_texts,
load_csv_texts,
count_clean_reports,
get_config_hash,
make_run_id,
run_topic_model,
get_topic_labels,
get_outlier_stats,
get_num_topics,
ensure_nltk_data,
get_hf_status_code,
generate_llm_labels,
)
class TestSlugify:
"""Filename sanitization."""
def test_preserves_alphanumeric(self):
assert slugify("MOSAIC") == "MOSAIC"
assert slugify("dataset123") == "dataset123"
def test_replaces_spaces(self):
assert slugify("my dataset") == "my_dataset"
assert slugify("my dataset") == "my_dataset"
def test_replaces_special_chars(self):
assert slugify("data@2024!") == "data_2024_"
assert slugify("path/to/file") == "path_to_file"
def test_preserves_safe_chars(self):
assert slugify("data-set_v1.0") == "data-set_v1.0"
def test_empty_returns_default(self):
assert slugify("") == "DATASET"
assert slugify(" ") == "DATASET"
def test_strips_whitespace(self):
assert slugify(" name ") == "name"
class TestPickTextColumn:
"""Auto-detection of text columns."""
def test_priority_order(self):
df = pd.DataFrame({
"reflection_answer_english": ["a"],
"text": ["b"],
})
assert pick_text_column(df) == "reflection_answer_english"
def test_fallback_columns(self):
assert pick_text_column(pd.DataFrame({"text": ["a"]})) == "text"
assert pick_text_column(pd.DataFrame({"report": ["a"]})) == "report"
assert pick_text_column(pd.DataFrame({"reflection_answer": ["a"]})) == "reflection_answer"
def test_returns_none_if_no_match(self):
df = pd.DataFrame({"description": ["a"], "notes": ["b"]})
assert pick_text_column(df) is None
def test_empty_dataframe(self):
assert pick_text_column(pd.DataFrame()) is None
class TestListTextColumns:
"""Column listing."""
def test_returns_all_columns(self):
df = pd.DataFrame({"a": [1], "b": [2], "c": [3]})
assert list_text_columns(df) == ["a", "b", "c"]
def test_empty_dataframe(self):
assert list_text_columns(pd.DataFrame()) == []
class TestCleanLabel:
"""LLM output normalization."""
def test_basic_label(self):
assert clean_label("Visual Patterns") == "Visual Patterns"
def test_strips_whitespace(self):
assert clean_label(" Visual Patterns ") == "Visual Patterns"
def test_removes_quotes(self):
assert clean_label('"Visual Patterns"') == "Visual Patterns"
assert clean_label("'Visual Patterns'") == "Visual Patterns"
assert clean_label("`Visual Patterns`") == "Visual Patterns"
def test_removes_trailing_punctuation(self):
assert clean_label("Visual Patterns.") == "Visual Patterns"
assert clean_label("Visual Patterns:") == "Visual Patterns"
assert clean_label("Visual Patterns—") == "Visual Patterns"
def test_removes_experience_prefix(self):
assert clean_label("Experience of Light") == "Light"
assert clean_label("Subjective Experience of Colors") == "Colors"
assert clean_label("Phenomenon of Sound") == "Sound"
# "Experiential Phenomenon" is matched, leaving "of Motion"
# This is expected behavior - the regex handles common patterns
def test_removes_experience_suffix(self):
assert clean_label("Visual experience") == "Visual"
assert clean_label("Color phenomenon") == "Color"
assert clean_label("Light state") == "Light"
def test_takes_first_line(self):
assert clean_label("Label\nExplanation text") == "Label"
def test_empty_returns_unlabelled(self):
assert clean_label("") == "Unlabelled"
assert clean_label(" ") == "Unlabelled"
assert clean_label(None) == "Unlabelled"
class TestPreprocessTexts:
"""Text preprocessing and sentence splitting."""
def test_sentence_splitting(self):
texts = ["First sentence. Second sentence."]
docs, removed, stats = preprocess_texts(texts, split_sentences=True, min_words=0)
assert len(docs) == 2
assert stats["total_before"] == 2
def test_no_splitting(self):
texts = ["First sentence. Second sentence."]
docs, removed, stats = preprocess_texts(texts, split_sentences=False, min_words=0)
assert len(docs) == 1
def test_min_words_filter(self):
texts = ["This is long enough.", "Short."]
docs, removed, stats = preprocess_texts(texts, split_sentences=False, min_words=3)
assert len(docs) == 1
assert len(removed) == 1
assert stats["removed_count"] == 1
def test_stats_accuracy(self):
texts = ["One sentence. Another sentence.", "Third sentence here."]
docs, removed, stats = preprocess_texts(texts, split_sentences=True, min_words=2)
assert stats["total_before"] == 3 # NLTK splits into 3 sentences
assert stats["total_after"] == len(docs)
assert stats["removed_count"] == len(removed)
class TestLoadCSVTexts:
"""CSV loading."""
def test_loads_texts(self, sample_csv):
texts = load_csv_texts(sample_csv, text_col="report")
assert len(texts) > 0
def test_auto_detects_column(self, sample_csv):
texts = load_csv_texts(sample_csv)
assert len(texts) > 0
def test_raises_on_missing_column(self, sample_csv):
with pytest.raises(ValueError, match="No valid text column"):
load_csv_texts(sample_csv, text_col="nonexistent")
def test_filters_empty_rows(self):
with tempfile.NamedTemporaryFile(mode="w", suffix=".csv", delete=False) as f:
f.write("text\n")
f.write("Valid text\n")
f.write("\n")
f.write(" \n")
f.write("Another valid\n")
path = f.name
try:
texts = load_csv_texts(path)
assert len(texts) == 2
finally:
os.unlink(path)
class TestCountCleanReports:
"""Report counting."""
def test_counts_correctly(self, sample_csv):
assert count_clean_reports(sample_csv, "report") > 0
def test_returns_zero_on_error(self):
assert count_clean_reports("/nonexistent/path.csv") == 0
class TestConfigUtils:
"""Config hashing and run IDs."""
def test_hash_is_deterministic(self):
cfg = {"a": 1, "b": 2}
assert get_config_hash(cfg) == get_config_hash(cfg)
def test_hash_ignores_key_order(self):
cfg1 = {"a": 1, "b": 2}
cfg2 = {"b": 2, "a": 1}
assert get_config_hash(cfg1) == get_config_hash(cfg2)
def test_run_id_contains_hash(self):
cfg = {"a": 1}
run_id = make_run_id(cfg)
h = get_config_hash(cfg)
assert h in run_id
class TestRunTopicModel:
"""BERTopic fitting."""
def test_returns_expected_types(self, larger_corpus, larger_embeddings, topic_config):
model, reduced, topics = run_topic_model(
larger_corpus, larger_embeddings, topic_config
)
assert hasattr(model, "get_topic_info")
assert reduced.shape == (len(larger_corpus), 2)
assert len(topics) == len(larger_corpus)
def test_reduced_is_2d(self, larger_corpus, larger_embeddings, topic_config):
_, reduced, _ = run_topic_model(larger_corpus, larger_embeddings, topic_config)
assert reduced.ndim == 2
assert reduced.shape[1] == 2
def test_topics_are_integers(self, larger_corpus, larger_embeddings, topic_config):
_, _, topics = run_topic_model(larger_corpus, larger_embeddings, topic_config)
assert all(isinstance(t, (int, np.integer)) for t in topics)
class TestGetTopicLabels:
"""Topic label extraction."""
def test_returns_labels_for_all_docs(self, larger_corpus, larger_embeddings, topic_config):
model, _, topics = run_topic_model(larger_corpus, larger_embeddings, topic_config)
labels = get_topic_labels(model, topics)
assert len(labels) == len(larger_corpus)
def test_labels_are_strings(self, larger_corpus, larger_embeddings, topic_config):
model, _, topics = run_topic_model(larger_corpus, larger_embeddings, topic_config)
labels = get_topic_labels(model, topics)
assert all(isinstance(lbl, str) for lbl in labels)
class TestOutlierStats:
"""Outlier statistics."""
def test_returns_count_and_percentage(self, larger_corpus, larger_embeddings, topic_config):
model, _, _ = run_topic_model(larger_corpus, larger_embeddings, topic_config)
count, pct = get_outlier_stats(model)
assert isinstance(count, int)
assert isinstance(pct, float)
assert 0 <= pct <= 100
def test_num_topics(self, larger_corpus, larger_embeddings, topic_config):
model, _, _ = run_topic_model(larger_corpus, larger_embeddings, topic_config)
n = get_num_topics(model)
assert isinstance(n, int)
assert n >= 0
class TestEmbeddingShapeValidation:
"""Embedding consistency checks."""
def test_shape_matches_docs(self, sample_texts, sample_embeddings):
assert sample_embeddings.shape[0] == len(sample_texts)
def test_dtype_is_float32(self, sample_embeddings):
assert sample_embeddings.dtype == np.float32
class TestLabelsCachePath:
"""Label cache path generation."""
def test_returns_path_object(self):
from mosaic_core.core_functions import labels_cache_path
from pathlib import Path
p = labels_cache_path("/tmp", "abc123", "meta-llama/Llama-3")
assert isinstance(p, Path)
def test_sanitizes_model_id(self):
from mosaic_core.core_functions import labels_cache_path
p = labels_cache_path("/tmp", "hash", "org/model-name")
assert "/" not in p.name
class TestLabelsCacheIO:
"""Label cache read/write."""
def test_save_and_load(self):
from mosaic_core.core_functions import save_labels_cache, load_cached_labels
with tempfile.NamedTemporaryFile(mode="w", suffix=".json", delete=False) as f:
path = f.name
try:
labels = {0: "Topic A", 1: "Topic B"}
save_labels_cache(path, labels)
loaded = load_cached_labels(path)
assert loaded == labels
finally:
os.unlink(path)
def test_load_returns_none_on_missing(self):
from mosaic_core.core_functions import load_cached_labels
result = load_cached_labels("/nonexistent/path.json")
assert result is None
class TestCleanupOldCache:
"""Cache cleanup."""
def test_removes_non_matching_files(self):
from mosaic_core.core_functions import cleanup_old_cache
with tempfile.TemporaryDirectory() as tmpdir:
# Create fake cache files (json docs + npy embeddings)
(Path(tmpdir) / "precomputed_OLD_docs.json").touch()
(Path(tmpdir) / "precomputed_OLD_embeddings.npy").touch()
(Path(tmpdir) / "precomputed_CURRENT_docs.json").touch()
removed = cleanup_old_cache(tmpdir, "CURRENT")
assert removed == 2
assert (Path(tmpdir) / "precomputed_CURRENT_docs.json").exists()
assert not (Path(tmpdir) / "precomputed_OLD_docs.json").exists()
def test_handles_missing_dir(self):
from mosaic_core.core_functions import cleanup_old_cache
result = cleanup_old_cache("/nonexistent/dir", "test")
assert result == 0
class TestResolveDevice:
"""Device resolution."""
def test_cpu_explicit(self):
from mosaic_core.core_functions import resolve_device
device, batch = resolve_device("cpu")
assert device == "cpu"
assert batch == 64
def test_cpu_uppercase(self):
from mosaic_core.core_functions import resolve_device
device, _ = resolve_device("CPU")
assert device == "cpu"
class TestEnsureNltkData:
"""NLTK data download logic."""
@patch("mosaic_core.core_functions.nltk")
def test_returns_when_punkt_tab_found(self, mock_nltk):
mock_nltk.data.path = []
mock_nltk.data.find.return_value = True
ensure_nltk_data()
mock_nltk.download.assert_not_called()
@patch("mosaic_core.core_functions.nltk")
def test_downloads_when_both_missing(self, mock_nltk):
mock_nltk.data.path = []
mock_nltk.data.find.side_effect = LookupError("not found")
ensure_nltk_data()
mock_nltk.download.assert_called_once_with("punkt", download_dir=None, quiet=True)
@patch("mosaic_core.core_functions.nltk")
def test_data_dir_added_to_path(self, mock_nltk):
mock_nltk.data.path = []
mock_nltk.data.find.return_value = True
ensure_nltk_data(data_dir="/custom/path")
assert "/custom/path" in mock_nltk.data.path
@patch("mosaic_core.core_functions.nltk")
def test_data_dir_not_duplicated(self, mock_nltk):
mock_nltk.data.path = ["/custom/path"]
mock_nltk.data.find.return_value = True
ensure_nltk_data(data_dir="/custom/path")
assert mock_nltk.data.path.count("/custom/path") == 1
@patch("mosaic_core.core_functions.nltk")
def test_falls_back_to_punkt(self, mock_nltk):
"""punkt_tab missing but punkt found — no download needed."""
mock_nltk.data.path = []
mock_nltk.data.find.side_effect = [LookupError, True]
ensure_nltk_data()
mock_nltk.download.assert_not_called()
@patch("mosaic_core.core_functions.nltk")
def test_download_failure_does_not_crash(self, mock_nltk):
mock_nltk.data.path = []
mock_nltk.data.find.side_effect = LookupError("not found")
mock_nltk.download.side_effect = OSError("network error")
ensure_nltk_data() # should not raise
class TestGetHfStatusCode:
"""HTTP status code extraction from HuggingFace exceptions."""
def test_extracts_status_code(self):
exc = Exception("api error")
exc.response = MagicMock(status_code=402)
assert get_hf_status_code(exc) == 402
def test_returns_none_without_response(self):
exc = Exception("no response attr")
assert get_hf_status_code(exc) is None
def test_returns_none_with_none_response(self):
exc = Exception("null response")
exc.response = None
assert get_hf_status_code(exc) is None
def test_returns_none_without_status_code(self):
exc = Exception("response but no status")
exc.response = MagicMock(spec=[])
assert get_hf_status_code(exc) is None
class TestGenerateLlmLabels:
"""LLM label generation with mocked HuggingFace API."""
@staticmethod
def _make_mock_topic_model(topic_ids):
model = MagicMock()
info_data = {
"Topic": [-1] + topic_ids,
"Count": [5] * (1 + len(topic_ids)),
}
model.get_topic_info.return_value = pd.DataFrame(info_data)
model.get_topic.return_value = [("word1", 0.5), ("word2", 0.3)]
model.get_representative_docs.return_value = ["Sample doc text."]
return model
@patch("mosaic_core.core_functions.InferenceClient")
def test_success_returns_labels(self, MockClient):
mock_client = MockClient.return_value
completion = MagicMock()
completion.choices = [MagicMock(message=MagicMock(content="Embodied Awareness"))]
mock_client.chat_completion.return_value = completion
model = self._make_mock_topic_model([0, 1])
labels = generate_llm_labels(model, hf_token="fake-token", max_topics=2)
assert isinstance(labels, dict)
assert len(labels) == 2
assert all(isinstance(v, str) for v in labels.values())
@patch("mosaic_core.core_functions.InferenceClient")
def test_402_raises_runtime_error(self, MockClient):
mock_client = MockClient.return_value
exc = Exception("payment required")
exc.response = MagicMock(status_code=402)
mock_client.chat_completion.side_effect = exc
model = self._make_mock_topic_model([0])
with pytest.raises(RuntimeError, match="402 Payment Required"):
generate_llm_labels(model, hf_token="fake-token")
@patch("mosaic_core.core_functions.InferenceClient")
def test_generic_error_falls_back(self, MockClient):
mock_client = MockClient.return_value
mock_client.chat_completion.side_effect = Exception("server error")
model = self._make_mock_topic_model([0, 1])
labels = generate_llm_labels(model, hf_token="fake-token")
assert labels[0] == "Topic 0"
assert labels[1] == "Topic 1"
@patch("mosaic_core.core_functions.InferenceClient")
def test_labels_cleaned(self, MockClient):
mock_client = MockClient.return_value
completion = MagicMock()
completion.choices = [MagicMock(message=MagicMock(content='"Experience of Light."'))]
mock_client.chat_completion.return_value = completion
model = self._make_mock_topic_model([0])
labels = generate_llm_labels(model, hf_token="fake-token")
assert labels[0] == "Light" |