Spaces:
Runtime error
Runtime error
Update app.py
Browse files
app.py
CHANGED
|
@@ -1,41 +1,45 @@
|
|
| 1 |
-
from transformers import
|
| 2 |
import torch
|
| 3 |
import torch.nn.functional as F
|
| 4 |
from PIL import Image
|
| 5 |
import gradio as gr
|
| 6 |
|
| 7 |
-
#
|
| 8 |
-
|
|
|
|
|
|
|
| 9 |
model = AutoModelForImageClassification.from_pretrained(model_name)
|
| 10 |
processor = AutoImageProcessor.from_pretrained(model_name)
|
| 11 |
model.eval()
|
| 12 |
|
| 13 |
-
#
|
| 14 |
-
|
| 15 |
-
"Atelectasis", "Cardiomegaly", "Effusion", "Infiltration", "Mass",
|
| 16 |
-
"Nodule", "Pneumonia", "Pneumothorax", "Consolidation", "Edema",
|
| 17 |
-
"Emphysema", "Fibrosis", "Pleural_Thickening", "Hernia"
|
| 18 |
-
]
|
| 19 |
|
| 20 |
-
#
|
| 21 |
target_diseases = ["Pneumonia", "Effusion", "Atelectasis"]
|
| 22 |
-
target_idxs = [all_diseases.index(d) for d in target_diseases]
|
| 23 |
|
|
|
|
|
|
|
|
|
|
| 24 |
def predict(image):
|
| 25 |
img = image.convert("RGB").resize((224, 224))
|
| 26 |
inputs = processor(images=img, return_tensors="pt")
|
| 27 |
-
|
| 28 |
with torch.no_grad():
|
| 29 |
logits = model(**inputs).logits
|
| 30 |
-
|
| 31 |
probs = F.softmax(logits, dim=1).squeeze()
|
| 32 |
-
|
| 33 |
results = []
|
| 34 |
-
for
|
| 35 |
-
|
| 36 |
-
|
|
|
|
| 37 |
return "\n".join(results)
|
| 38 |
|
|
|
|
|
|
|
|
|
|
| 39 |
iface = gr.Interface(
|
| 40 |
fn=predict,
|
| 41 |
inputs=gr.Image(type="pil"),
|
|
|
|
| 1 |
+
from transformers import AutoImageProcessor, AutoModelForImageClassification
|
| 2 |
import torch
|
| 3 |
import torch.nn.functional as F
|
| 4 |
from PIL import Image
|
| 5 |
import gradio as gr
|
| 6 |
|
| 7 |
+
# -----------------------------
|
| 8 |
+
# 1. Load pretrained chest X-ray model
|
| 9 |
+
# -----------------------------
|
| 10 |
+
model_name = "yikuan8/resnet50_chestxray14" # real NIH ChestX-ray14 model
|
| 11 |
model = AutoModelForImageClassification.from_pretrained(model_name)
|
| 12 |
processor = AutoImageProcessor.from_pretrained(model_name)
|
| 13 |
model.eval()
|
| 14 |
|
| 15 |
+
# Get labels directly from the model config
|
| 16 |
+
id2label = model.config.id2label
|
|
|
|
|
|
|
|
|
|
|
|
|
| 17 |
|
| 18 |
+
# Pick only these 3 diseases
|
| 19 |
target_diseases = ["Pneumonia", "Effusion", "Atelectasis"]
|
|
|
|
| 20 |
|
| 21 |
+
# -----------------------------
|
| 22 |
+
# 2. Prediction function
|
| 23 |
+
# -----------------------------
|
| 24 |
def predict(image):
|
| 25 |
img = image.convert("RGB").resize((224, 224))
|
| 26 |
inputs = processor(images=img, return_tensors="pt")
|
| 27 |
+
|
| 28 |
with torch.no_grad():
|
| 29 |
logits = model(**inputs).logits
|
| 30 |
+
|
| 31 |
probs = F.softmax(logits, dim=1).squeeze()
|
| 32 |
+
|
| 33 |
results = []
|
| 34 |
+
for idx, label in id2label.items():
|
| 35 |
+
if label in target_diseases:
|
| 36 |
+
results.append(f"{label}: {probs[idx].item():.2f}")
|
| 37 |
+
|
| 38 |
return "\n".join(results)
|
| 39 |
|
| 40 |
+
# -----------------------------
|
| 41 |
+
# 3. Gradio interface
|
| 42 |
+
# -----------------------------
|
| 43 |
iface = gr.Interface(
|
| 44 |
fn=predict,
|
| 45 |
inputs=gr.Image(type="pil"),
|