dana's viz changes

docs/commands/run.md

@@ -3,5 +3,5 @@
 - USE VENV310 TO GET THE RIGHT DEPENDENCIES 
 
 ```
-python -m uvicorn webapp.app.main:app --port 8000
+python -m uvicorn webapp.app.main:app --port 7860
 ```

webapp/app/shiny_apps/heatmap_app.py

@@ -424,7 +424,7 @@ def create_app(api_base_url: str = "http://localhost:8000"):
             )
 
             # Highlight exon region
-            fig.add_vrect(x0=start-0.5, x1=end-0.5, fillcolor="#d0d0d0", line_width=0, opacity=0.2)
+            fig.add_vrect(x0=start-0.5, x1=end-0.5, fillcolor="#d0d0d0", line_width=0, opacity=0.1)
 
             # Add filter icons to the left of y-axis labels
             fig.update_layout(images=[])
@@ -448,7 +448,7 @@ def create_app(api_base_url: str = "http://localhost:8000"):
                     )
 
             fig.update_layout(
-                height=max(638, 18 * len(filters_rev) + 188),
+                height=max(650, 18 * len(filters_rev) + 180),
                 width=1050,
                 margin=dict(l=130, r=20, t=80, b=30),
                 xaxis=dict(

webapp/app/shiny_apps/silhouette_app.py

@@ -397,6 +397,8 @@ def create_app(api_base_url: str = "http://localhost:8000"):
 
             ax.set_xticks(x)
             ax.set_xticklabels(bases, fontsize=7)
+            ax.spines['top'].set_visible(False)
+            ax.spines['right'].set_visible(False)
 
             # Add secondary structure on second x-axis
             ax2 = ax.twiny()
@@ -420,8 +422,8 @@ def create_app(api_base_url: str = "http://localhost:8000"):
             ax.set_yticklabels([str(abs(t)) for t in ticks])
 
             ax.set_title("Silhouette View - Position-wise Filter Contributions")
-            ax.set_ylabel("Strength")
-            ax.legend(loc='upper right')
+            ax.set_ylabel("Strength (a.u.)")
+            ax.legend(loc='upper right', frameon=False)
 
             plt.tight_layout()