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File size: 2,009 Bytes
2592750 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 | #!/usr/bin/env python3
"""
Install CAI package with workaround for wheel naming issues.
This script installs the CAI package using --no-use-pep517 to avoid
the dynamic wheel naming problem that occurs with pyproject.toml builds.
"""
import subprocess
import sys
import os
def install_cai():
"""Install CAI package with legacy setup.py build system."""
print("Installing CAI package...")
# CAI repository URL and commit
cai_url = "git+https://github.com/Benjamin-Lee/CodonAdaptationIndex.git@b6e017a92c58829f6a5aec8c26a21262bc2a6610"
try:
# Install with --no-use-pep517 to force legacy setup.py build
cmd = [
sys.executable, "-m", "pip", "install",
"--no-use-pep517",
"--no-cache-dir",
cai_url
]
print(f"Running: {' '.join(cmd)}")
result = subprocess.run(cmd, check=True, capture_output=True, text=True)
print("CAI installation successful!")
print(result.stdout)
return True
except subprocess.CalledProcessError as e:
print(f"CAI installation failed: {e}")
print(f"STDOUT: {e.stdout}")
print(f"STDERR: {e.stderr}")
return False
def verify_installation():
"""Verify CAI package can be imported."""
try:
import CAI
from CAI import CAI as cai_func, relative_adaptiveness
print("✅ CAI package imported successfully")
return True
except ImportError as e:
print(f"❌ Failed to import CAI: {e}")
return False
if __name__ == "__main__":
print("ColiFormer CAI Package Installer")
print("=" * 40)
# Install CAI
if install_cai():
# Verify installation
if verify_installation():
print("🎉 CAI installation completed successfully!")
sys.exit(0)
else:
print("💥 CAI installation verification failed!")
sys.exit(1)
else:
print("💥 CAI installation failed!")
sys.exit(1)
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