medrax2 / benchmarking /runner.py
Junzhe Li
revamped benchmarking suite
89321e2
"""Main test runner for benchmarking pipeline."""
import json
import time
import logging
from datetime import datetime
from pathlib import Path
from typing import Dict, Optional, Any
from dataclasses import dataclass
from tqdm import tqdm
import re
from concurrent.futures import ThreadPoolExecutor, as_completed
from .llm_providers import LLMProvider, LLMRequest, LLMResponse
from .benchmarks import Benchmark, BenchmarkDataPoint
@dataclass
class BenchmarkResult:
"""Result of running a benchmark on a single data point."""
data_point_id: str
question: str
model_answer: str
correct_answer: str
is_correct: bool
duration: float
usage: Optional[Dict[str, Any]] = None
error: Optional[str] = None
chunk_history: Optional[Dict[str, Any]] = None
metadata: Optional[Dict[str, Any]] = None
@dataclass
class BenchmarkRunConfig:
"""Configuration for a benchmark run."""
benchmark_name: str
provider_name: str
model_name: str
output_dir: str
max_questions: Optional[int] = None
temperature: float = 0.7
top_p: float = 0.95
max_tokens: int = 5000
concurrency: int = 1
random_seed: Optional[int] = None
class BenchmarkRunner:
"""Main class for running benchmarks against LLM providers."""
def __init__(self, config: BenchmarkRunConfig):
"""Initialize the benchmark runner.
Args:
config (BenchmarkRunConfig): Configuration for the benchmark run
"""
self.config = config
self.results = []
self.output_dir = Path(config.output_dir)
self.output_dir.mkdir(parents=True, exist_ok=True)
# Generate unique run ID
self.run_id = f"{config.benchmark_name}_{config.provider_name}_{config.model_name}_{config.max_questions}_{datetime.now().strftime('%Y%m%d_%H%M%S')}"
# Set up logging
self._setup_logging()
self.logger.info(f"Initialized benchmark runner with ID: {self.run_id}")
def _setup_logging(self) -> None:
"""Set up logging configuration."""
log_file = self.output_dir / f"benchmark_run_{datetime.now().strftime('%Y%m%d_%H%M%S')}.log"
# Create logger
self.logger = logging.getLogger(f"benchmark_runner_{self.run_id}")
self.logger.setLevel(logging.INFO)
# Create handlers
file_handler = logging.FileHandler(log_file)
console_handler = logging.StreamHandler()
# Create formatter
formatter = logging.Formatter(
'%(asctime)s - %(name)s - %(levelname)s - %(message)s'
)
file_handler.setFormatter(formatter)
console_handler.setFormatter(formatter)
# Add handlers to logger
self.logger.addHandler(file_handler)
self.logger.addHandler(console_handler)
def run_benchmark(
self,
benchmark: Benchmark,
llm_provider: LLMProvider,
) -> Dict[str, Any]:
"""Run a benchmark against an LLM provider.
Args:
benchmark (Benchmark): The benchmark to run
llm_provider (LLMProvider): The LLM provider to test
Returns:
Dict[str, Any]: Summary of benchmark results
"""
self.logger.info(f"Starting benchmark run: {self.run_id}")
self.logger.info(f"Benchmark: {benchmark}")
self.logger.info(f"Provider: {llm_provider.provider_name}")
self.logger.info(f"Model: {llm_provider.model_name}")
# Test provider connection
if not llm_provider.test_connection():
self.logger.error("LLM provider connection test failed")
return {"error": "LLM provider connection test failed"}
# Initialize counters
processed = 0
correct = 0
total_duration = 0.0
# Determine concurrency
max_workers = max(1, int(getattr(self.config, "concurrency", 1) or 1))
# Process data points in parallel using a bounded thread pool
with tqdm(total=len(benchmark), desc="Processing questions") as pbar:
with ThreadPoolExecutor(max_workers=max_workers) as executor:
future_to_index = {executor.submit(self._process_data_point, dp, llm_provider): idx for idx, dp in enumerate(benchmark)}
for future in as_completed(future_to_index):
idx = future_to_index[future]
try:
result = future.result()
except Exception as e:
self.logger.error(f"Error processing data point {idx}: {e}")
result = BenchmarkResult(
data_point_id=f"error_{idx}",
question="",
model_answer="",
correct_answer="",
is_correct=False,
duration=0.0,
error=str(e)
)
# Update counters
processed += 1
if result.is_correct:
correct += 1
total_duration += result.duration
# Add to results and persist immediately
self.results.append(result)
self._save_individual_result(result)
# Update progress bar
pbar.update(1)
# Periodic logging
if processed % 10 == 0:
accuracy = (correct / processed) * 100
avg_duration = total_duration / processed if processed > 0 else 0.0
self.logger.info(
f"Progress: {processed}/{len(benchmark)} | "
f"Accuracy: {accuracy:.2f}% | "
f"Avg Duration: {avg_duration:.2f}s"
)
# Save final results
summary = self._save_final_results(benchmark)
self.logger.info(f"Benchmark run completed: {self.run_id}")
self.logger.info(f"Summary: {summary}")
return summary
def _process_data_point(
self,
data_point: BenchmarkDataPoint,
llm_provider: LLMProvider
) -> BenchmarkResult:
"""Process a single data point.
Args:
data_point (BenchmarkDataPoint): The data point to process
llm_provider (LLMProvider): The LLM provider to use
Returns:
BenchmarkResult: Result of processing the data point
"""
start_time = time.time()
try:
# Create request for LLM
request = LLMRequest(
text=data_point.text,
images=data_point.images
)
# Get response from LLM
response: LLMResponse = llm_provider.generate_response(request)
# Extract answer (this may need customization based on benchmark)
model_answer = self._extract_answer(response.content)
# Check if correct
is_correct = model_answer == data_point.correct_answer
# Calculate duration
duration = time.time() - start_time
# Return result
return BenchmarkResult(
data_point_id=data_point.id,
question=data_point.text,
model_answer=model_answer,
correct_answer=data_point.correct_answer,
is_correct=is_correct,
duration=duration,
usage=response.usage,
chunk_history=response.chunk_history,
metadata={
"data_point_metadata": data_point.metadata,
"raw_response": response.content,
}
)
except Exception as e:
duration = time.time() - start_time
return BenchmarkResult(
data_point_id=data_point.id,
question=data_point.text,
model_answer="",
correct_answer=data_point.correct_answer,
is_correct=False,
duration=duration,
error=str(e),
chunk_history=None,
metadata={
"data_point_metadata": data_point.metadata
}
)
def _extract_answer(self, response_text: str) -> str:
"""Extract the answer from the model response.
Args:
response_text (str): The full response text from the model
Returns:
str: The extracted answer
"""
# Look for the '\boxed{A}' format
boxed_pattern = r'\\boxed\{([A-Fa-f])\}'
match = re.search(boxed_pattern, response_text)
if match:
return match.group(1).upper()
# If no pattern matches, return the full response
return response_text.strip()
def _save_individual_result(self, result: BenchmarkResult) -> None:
"""Save a single result to its own JSON file.
Args:
result (BenchmarkResult): The result to save
"""
# Sanitize data_point_id for filename (remove invalid characters)
safe_id = re.sub(r'[^\w\-_.]', '_', result.data_point_id)
# Create run_id directory and individual_results subdirectory
run_dir = self.output_dir / self.run_id
individual_results_dir = run_dir / "individual_results"
individual_results_dir.mkdir(parents=True, exist_ok=True)
# Create filename with benchmark name and data point ID
filename = f"{self.config.benchmark_name}_{safe_id}.json"
result_file = individual_results_dir / filename
# Convert result to serializable format
result_data = {
"timestamp": datetime.now().isoformat(),
"run_id": self.run_id,
"data_point_id": result.data_point_id,
"question": result.question,
"model_answer": result.model_answer,
"correct_answer": result.correct_answer,
"is_correct": result.is_correct,
"duration": result.duration,
"usage": result.usage,
"error": result.error,
"chunk_history": result.chunk_history,
"metadata": result.metadata,
}
# Save to file
with open(result_file, 'w') as f:
json.dump(result_data, f, indent=2)
def _save_final_results(self, benchmark: Benchmark) -> Dict[str, Any]:
"""Save final results and return summary.
Args:
benchmark (Benchmark): The benchmark that was run
Returns:
Dict[str, Any]: Summary of results
"""
# Create run_id directory and final_results subdirectory
run_dir = self.output_dir / self.run_id
final_results_dir = run_dir / "final_results"
final_results_dir.mkdir(parents=True, exist_ok=True)
# Save detailed results
results_file = final_results_dir / f"{self.run_id}_results.json"
# Convert results to serializable format for final file
results_data = []
for result in self.results:
results_data.append({
"data_point_id": result.data_point_id,
"question": result.question,
"model_answer": result.model_answer,
"correct_answer": result.correct_answer,
"is_correct": result.is_correct,
"duration": result.duration,
"usage": result.usage,
"error": result.error,
"metadata": result.metadata,
})
with open(results_file, 'w') as f:
json.dump(results_data, f, indent=2)
# Calculate summary statistics
total_questions = len(self.results)
correct_answers = sum(1 for r in self.results if r.is_correct)
total_duration = sum(r.duration for r in self.results)
accuracy = (correct_answers / total_questions) * 100 if total_questions > 0 else 0
# Create summary
summary = {
"run_id": self.run_id,
"timestamp": datetime.now().isoformat(),
"config": {
"benchmark_name": self.config.benchmark_name,
"provider_name": self.config.provider_name,
"model_name": self.config.model_name,
"temperature": self.config.temperature,
"top_p": self.config.top_p,
"max_tokens": self.config.max_tokens,
},
"benchmark_info": {
"total_size": len(benchmark),
"processed_questions": total_questions,
},
"results": {
"accuracy": accuracy,
"correct_answers": correct_answers,
"total_questions": total_questions,
"total_duration": total_duration,
"avg_duration_per_question": total_duration / total_questions if total_questions > 0 else 0,
},
"results_file": str(results_file),
}
# Save summary
summary_file = final_results_dir / f"{self.run_id}_summary.json"
with open(summary_file, 'w') as f:
json.dump(summary, f, indent=2)
return summary