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Add support for selecting tools.
Browse files
main.py
CHANGED
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@@ -18,28 +18,49 @@ logging.set_verbosity_error()
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_ = load_dotenv()
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def initialize_agent(
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prompts = load_prompts_from_file(prompt_file)
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prompt = prompts["MEDICAL_ASSISTANT"]
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"ChestXRayClassifierTool": ChestXRayClassifierTool(device=device),
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"ChestXRaySegmentationTool": ChestXRaySegmentationTool(device=device),
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"LlavaMedTool": LlavaMedTool(cache_dir=model_dir, device=device, load_in_8bit=True),
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"XRayVQATool": XRayVQATool(cache_dir=model_dir, device=device),
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"ChestXRayReportGeneratorTool": ChestXRayReportGeneratorTool(
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cache_dir=model_dir, device=device
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),
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"XRayPhraseGroundingTool": XRayPhraseGroundingTool(
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cache_dir=model_dir, temp_dir=temp_dir, load_in_8bit=True, device=device
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),
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"ChestXRayGeneratorTool": ChestXRayGeneratorTool(
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model_path=f"{model_dir}/roentgen", temp_dir=temp_dir, device=device
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),
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"ImageVisualizerTool": ImageVisualizerTool(),
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"DicomProcessorTool": DicomProcessorTool(temp_dir=temp_dir),
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}
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checkpointer = MemorySaver()
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model = ChatOpenAI(model="gpt-4o", temperature=0.7, top_p=0.95)
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agent = Agent(
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@@ -56,12 +77,28 @@ def initialize_agent(prompt_file, model_dir="/model-weights", temp_dir="temp", d
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if __name__ == "__main__":
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print("Starting server...")
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#
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#
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agent, tools_dict = initialize_agent(
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"medrax/docs/system_prompts.txt", model_dir="/model-weights"
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)
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demo = create_demo(agent, tools_dict)
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_ = load_dotenv()
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def initialize_agent(
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prompt_file, tools_to_use=None, model_dir="/model-weights", temp_dir="temp", device="cuda"
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):
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"""Initialize the MedRAX agent with specified tools and configuration.
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Args:
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prompt_file (str): Path to file containing system prompts
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tools_to_use (List[str], optional): List of tool names to initialize. If None, all tools are initialized.
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model_dir (str, optional): Directory containing model weights. Defaults to "/model-weights".
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temp_dir (str, optional): Directory for temporary files. Defaults to "temp".
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device (str, optional): Device to run models on. Defaults to "cuda".
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Returns:
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Tuple[Agent, Dict[str, BaseTool]]: Initialized agent and dictionary of tool instances
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"""
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prompts = load_prompts_from_file(prompt_file)
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prompt = prompts["MEDICAL_ASSISTANT"]
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all_tools = {
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"ChestXRayClassifierTool": lambda: ChestXRayClassifierTool(device=device),
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"ChestXRaySegmentationTool": lambda: ChestXRaySegmentationTool(device=device),
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"LlavaMedTool": lambda: LlavaMedTool(cache_dir=model_dir, device=device, load_in_8bit=True),
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"XRayVQATool": lambda: XRayVQATool(cache_dir=model_dir, device=device),
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"ChestXRayReportGeneratorTool": lambda: ChestXRayReportGeneratorTool(
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cache_dir=model_dir, device=device
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),
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"XRayPhraseGroundingTool": lambda: XRayPhraseGroundingTool(
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cache_dir=model_dir, temp_dir=temp_dir, load_in_8bit=True, device=device
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),
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"ChestXRayGeneratorTool": lambda: ChestXRayGeneratorTool(
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model_path=f"{model_dir}/roentgen", temp_dir=temp_dir, device=device
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),
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"ImageVisualizerTool": lambda: ImageVisualizerTool(),
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"DicomProcessorTool": lambda: DicomProcessorTool(temp_dir=temp_dir),
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}
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# Initialize only selected tools or all if none specified
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tools_dict = {}
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tools_to_use = tools_to_use or all_tools.keys()
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for tool_name in tools_to_use:
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if tool_name in all_tools:
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tools_dict[tool_name] = all_tools[tool_name]()
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checkpointer = MemorySaver()
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model = ChatOpenAI(model="gpt-4o", temperature=0.7, top_p=0.95)
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agent = Agent(
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if __name__ == "__main__":
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"""
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This is the main entry point for the MedRAX application.
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It initializes the agent with the selected tools and creates the demo.
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"""
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print("Starting server...")
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# Example: initialize with only specific tools
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# Here three tools are commented out, you can uncomment them to use them
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selected_tools = [
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"ImageVisualizerTool",
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"DicomProcessorTool",
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"ChestXRayClassifierTool",
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"ChestXRaySegmentationTool",
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"ChestXRayReportGeneratorTool",
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"XRayVQATool",
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# "LlavaMedTool",
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# "XRayPhraseGroundingTool",
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# "ChestXRayGeneratorTool",
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]
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agent, tools_dict = initialize_agent(
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"medrax/docs/system_prompts.txt", tools_to_use=selected_tools, model_dir="/model-weights"
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)
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demo = create_demo(agent, tools_dict)
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