add init and updat chexbert

CheXbert/src/label.py

@@ -11,12 +11,12 @@ from weights_utils import get_weight
 
 from . import utils
 # import utils
-from models.bert_labeler import bert_labeler
-from bert_tokenizer import tokenize
+from .models.bert_labeler import bert_labeler
+from .bert_tokenizer import tokenize
 from transformers import BertTokenizer
 from collections import OrderedDict
-from datasets.unlabeled_dataset import UnlabeledDataset
-from constants import *
+from .datasets.unlabeled_dataset import UnlabeledDataset
+from .constants import *
 from tqdm import tqdm
 
 def collate_fn_no_labels(sample_list):

CheXbert/src/run_bert.py

@@ -6,9 +6,9 @@ import torch.nn as nn
 import numpy as np
 import pandas as pd
 import utils
-from models.bert_labeler import bert_labeler
-from datasets.impressions_dataset import ImpressionsDataset
-from constants import *
+from .models.bert_labeler import bert_labeler
+from .datasets.impressions_dataset import ImpressionsDataset
+from .constants import *
 
 def collate_fn_labels(sample_list):
      """Custom collate function to pad reports in each batch to the max len

CheXbert/src/utils.py

@@ -6,11 +6,11 @@ import numpy as np
 import json
 # from models.bert_labeler import bert_labeler
 from .models.bert_labeler import bert_labeler
-from bert_tokenizer import tokenize
+from .bert_tokenizer import tokenize
 from sklearn.metrics import f1_score, confusion_matrix
 from statsmodels.stats.inter_rater import cohens_kappa
 from transformers import BertTokenizer
-from constants import *
+from .constants import *
 
 def get_weighted_f1_weights(train_path_or_csv):
     """Compute weights used to obtain the weighted average of