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README.md
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scvi-tools offers a comprehensive suite of models designed to address various challenges in single-cell data analysis.
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### **Current HubModels**
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- **[scVI](https://docs.scvi-tools.org/en/stable/user_guide/models.html
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- A variational autoencoder for dimensionality reduction, batch correction, and clustering.
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- Ideal for processing single-cell RNA-seq data.
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- **[SCANVI](https://docs.scvi-tools.org/en/stable/user_guide/models.html
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- A semi-supervised model designed for label prediction, especially in cases of partially labeled data.
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- **[TOTALVI](https://docs.scvi-tools.org/en/stable/user_guide/models.html
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- A multi-modal model for joint analysis of RNA and protein data, additionally allowing imputation of missing protein data.
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- **[MultiVI](https://docs.scvi-tools.org/en/stable/user_guide/models.html
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- A multi-modal model for joint analysis of RNA, ATAC and protein data, enabling integrative insights from diverse omics data.
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- **[DestVI](https://docs.scvi-tools.org/en/stable/user_guide/models.html
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- A deconvolution model for prediction of single-cell profiles given subcellular spatial transcriptomics data. We provide here pre-trained single cell models.
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- **[Stereoscope](https://docs.scvi-tools.org/en/stable/user_guide/models.html
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- A deconvolution model for prediction of cell-type composition given subcellular spatial transcriptomics data. We provide here pre-trained single cell models.
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Explore the full list of models in scvi-tools in our **[user guide](https://docs.scvi-tools.org/en/stable/user_guide/index.html)**.
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scvi-tools offers a comprehensive suite of models designed to address various challenges in single-cell data analysis.
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| 21 |
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### **Current HubModels**
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| 23 |
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- **[scVI](https://docs.scvi-tools.org/en/stable/user_guide/models/scvi.html)**:
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- A variational autoencoder for dimensionality reduction, batch correction, and clustering.
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- Ideal for processing single-cell RNA-seq data.
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- **[SCANVI](https://docs.scvi-tools.org/en/stable/user_guide/models/scanvi.html)**:
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- A semi-supervised model designed for label prediction, especially in cases of partially labeled data.
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| 28 |
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- **[TOTALVI](https://docs.scvi-tools.org/en/stable/user_guide/models/totalvi.html)**:
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- A multi-modal model for joint analysis of RNA and protein data, additionally allowing imputation of missing protein data.
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| 30 |
+
- **[MultiVI](https://docs.scvi-tools.org/en/stable/user_guide/models/multivi.html)**:
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- A multi-modal model for joint analysis of RNA, ATAC and protein data, enabling integrative insights from diverse omics data.
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+
- **[DestVI](https://docs.scvi-tools.org/en/stable/user_guide/models/destvi.html)**:
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- A deconvolution model for prediction of single-cell profiles given subcellular spatial transcriptomics data. We provide here pre-trained single cell models (CondSCVI).
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- **[Stereoscope](https://docs.scvi-tools.org/en/stable/user_guide/models/stereoscope.html)**:
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- A deconvolution model for prediction of cell-type composition given subcellular spatial transcriptomics data. We provide here pre-trained single cell models.
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Explore the full list of models in scvi-tools in our **[user guide](https://docs.scvi-tools.org/en/stable/user_guide/index.html)**.
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