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Running
on
Zero
| import os | |
| import shutil | |
| import subprocess | |
| import sys | |
| import tempfile | |
| import threading | |
| import unittest | |
| from typing import List, Optional | |
| def run_cli_redact( | |
| script_path: str, | |
| input_file: str, | |
| output_dir: str, | |
| task: str = "redact", | |
| timeout: int = 600, # 10-minute timeout | |
| # --- General Arguments --- | |
| input_dir: Optional[str] = None, | |
| language: Optional[str] = None, | |
| allow_list: Optional[str] = None, | |
| pii_detector: Optional[str] = None, | |
| username: Optional[str] = None, | |
| save_to_user_folders: Optional[bool] = None, | |
| local_redact_entities: Optional[List[str]] = None, | |
| aws_redact_entities: Optional[List[str]] = None, | |
| aws_access_key: Optional[str] = None, | |
| aws_secret_key: Optional[str] = None, | |
| cost_code: Optional[str] = None, | |
| aws_region: Optional[str] = None, | |
| s3_bucket: Optional[str] = None, | |
| do_initial_clean: Optional[bool] = None, | |
| save_logs_to_csv: Optional[bool] = None, | |
| save_logs_to_dynamodb: Optional[bool] = None, | |
| display_file_names_in_logs: Optional[bool] = None, | |
| upload_logs_to_s3: Optional[bool] = None, | |
| s3_logs_prefix: Optional[str] = None, | |
| # --- PDF/Image Redaction Arguments --- | |
| ocr_method: Optional[str] = None, | |
| page_min: Optional[int] = None, | |
| page_max: Optional[int] = None, | |
| images_dpi: Optional[float] = None, | |
| chosen_local_ocr_model: Optional[str] = None, | |
| preprocess_local_ocr_images: Optional[bool] = None, | |
| compress_redacted_pdf: Optional[bool] = None, | |
| return_pdf_end_of_redaction: Optional[bool] = None, | |
| deny_list_file: Optional[str] = None, | |
| allow_list_file: Optional[str] = None, | |
| redact_whole_page_file: Optional[str] = None, | |
| handwrite_signature_extraction: Optional[List[str]] = None, | |
| extract_forms: Optional[bool] = None, | |
| extract_tables: Optional[bool] = None, | |
| extract_layout: Optional[bool] = None, | |
| # --- Word/Tabular Anonymisation Arguments --- | |
| anon_strategy: Optional[str] = None, | |
| text_columns: Optional[List[str]] = None, | |
| excel_sheets: Optional[List[str]] = None, | |
| fuzzy_mistakes: Optional[int] = None, | |
| match_fuzzy_whole_phrase_bool: Optional[bool] = None, | |
| # --- Duplicate Detection Arguments --- | |
| duplicate_type: Optional[str] = None, | |
| similarity_threshold: Optional[float] = None, | |
| min_word_count: Optional[int] = None, | |
| min_consecutive_pages: Optional[int] = None, | |
| greedy_match: Optional[bool] = None, | |
| combine_pages: Optional[bool] = None, | |
| remove_duplicate_rows: Optional[bool] = None, | |
| # --- Textract Batch Operations Arguments --- | |
| textract_action: Optional[str] = None, | |
| job_id: Optional[str] = None, | |
| extract_signatures: Optional[bool] = None, | |
| textract_bucket: Optional[str] = None, | |
| textract_input_prefix: Optional[str] = None, | |
| textract_output_prefix: Optional[str] = None, | |
| s3_textract_document_logs_subfolder: Optional[str] = None, | |
| local_textract_document_logs_subfolder: Optional[str] = None, | |
| poll_interval: Optional[int] = None, | |
| max_poll_attempts: Optional[int] = None, | |
| ) -> bool: | |
| """ | |
| Executes the cli_redact.py script with specified arguments using a subprocess. | |
| Args: | |
| script_path (str): The path to the cli_redact.py script. | |
| input_file (str): The path to the input file to process. | |
| output_dir (str): The path to the directory for output files. | |
| task (str): The main task to perform ('redact', 'deduplicate', or 'textract'). | |
| timeout (int): Timeout in seconds for the subprocess. | |
| # General Arguments | |
| input_dir (str): Directory for all input files. | |
| language (str): Language of the document content. | |
| allow_list (str): Path to a CSV file with words to exclude from redaction. | |
| pii_detector (str): Core PII detection method (Local, AWS Comprehend, or None). | |
| username (str): Username for the session. | |
| save_to_user_folders (bool): Whether to save to user folders or not. | |
| local_redact_entities (List[str]): Local redaction entities to use. | |
| aws_redact_entities (List[str]): AWS redaction entities to use. | |
| aws_access_key (str): Your AWS Access Key ID. | |
| aws_secret_key (str): Your AWS Secret Access Key. | |
| cost_code (str): Cost code for tracking usage. | |
| aws_region (str): AWS region for cloud services. | |
| s3_bucket (str): S3 bucket name for cloud operations. | |
| do_initial_clean (bool): Perform initial text cleaning for tabular data. | |
| save_logs_to_csv (bool): Save processing logs to CSV files. | |
| save_logs_to_dynamodb (bool): Save processing logs to DynamoDB. | |
| display_file_names_in_logs (bool): Include file names in log outputs. | |
| upload_logs_to_s3 (bool): Upload log files to S3 after processing. | |
| s3_logs_prefix (str): S3 prefix for usage log files. | |
| # PDF/Image Redaction Arguments | |
| ocr_method (str): OCR method for text extraction from images. | |
| page_min (int): First page to redact. | |
| page_max (int): Last page to redact. | |
| images_dpi (float): DPI for image processing. | |
| chosen_local_ocr_model (str): Local OCR model to use. | |
| preprocess_local_ocr_images (bool): Preprocess images before OCR. | |
| compress_redacted_pdf (bool): Compress the final redacted PDF. | |
| return_pdf_end_of_redaction (bool): Return PDF at end of redaction process. | |
| deny_list_file (str): Custom words file to recognize for redaction. | |
| allow_list_file (str): Custom words file to recognize for redaction. | |
| redact_whole_page_file (str): File for pages to redact completely. | |
| handwrite_signature_extraction (List[str]): Handwriting and signature extraction options. | |
| extract_forms (bool): Extract forms during Textract analysis. | |
| extract_tables (bool): Extract tables during Textract analysis. | |
| extract_layout (bool): Extract layout during Textract analysis. | |
| # Word/Tabular Anonymisation Arguments | |
| anon_strategy (str): The anonymisation strategy to apply. | |
| text_columns (List[str]): A list of column names to anonymise or deduplicate. | |
| excel_sheets (List[str]): Specific Excel sheet names to process. | |
| fuzzy_mistakes (int): Number of allowed spelling mistakes for fuzzy matching. | |
| match_fuzzy_whole_phrase_bool (bool): Match fuzzy whole phrase boolean. | |
| # Duplicate Detection Arguments | |
| duplicate_type (str): Type of duplicate detection (pages or tabular). | |
| similarity_threshold (float): Similarity threshold (0-1) to consider content as duplicates. | |
| min_word_count (int): Minimum word count for text to be considered. | |
| min_consecutive_pages (int): Minimum number of consecutive pages to consider as a match. | |
| greedy_match (bool): Use greedy matching strategy for consecutive pages. | |
| combine_pages (bool): Combine text from the same page number within a file. | |
| remove_duplicate_rows (bool): Remove duplicate rows from the output. | |
| # Textract Batch Operations Arguments | |
| textract_action (str): Textract action to perform (submit, retrieve, or list). | |
| job_id (str): Textract job ID for retrieve action. | |
| extract_signatures (bool): Extract signatures during Textract analysis. | |
| textract_bucket (str): S3 bucket name for Textract operations. | |
| textract_input_prefix (str): S3 prefix for input files in Textract operations. | |
| textract_output_prefix (str): S3 prefix for output files in Textract operations. | |
| s3_textract_document_logs_subfolder (str): S3 prefix for logs in Textract operations. | |
| local_textract_document_logs_subfolder (str): Local prefix for logs in Textract operations. | |
| poll_interval (int): Polling interval in seconds for Textract job status. | |
| max_poll_attempts (int): Maximum number of polling attempts for Textract job completion. | |
| Returns: | |
| bool: True if the script executed successfully, False otherwise. | |
| """ | |
| # 1. Get absolute paths and perform pre-checks | |
| script_abs_path = os.path.abspath(script_path) | |
| output_abs_dir = os.path.abspath(output_dir) | |
| # Handle input file based on task and action | |
| if task == "textract" and textract_action in ["retrieve", "list"]: | |
| # For retrieve and list actions, input file is not required | |
| input_abs_path = None | |
| else: | |
| # For all other cases, input file is required | |
| if input_file is None: | |
| raise ValueError("Input file is required for this task") | |
| input_abs_path = os.path.abspath(input_file) | |
| if not os.path.isfile(input_abs_path): | |
| raise FileNotFoundError(f"Input file not found: {input_abs_path}") | |
| if not os.path.isfile(script_abs_path): | |
| raise FileNotFoundError(f"Script not found: {script_abs_path}") | |
| if not os.path.isdir(output_abs_dir): | |
| # Create the output directory if it doesn't exist | |
| print(f"Output directory not found. Creating: {output_abs_dir}") | |
| os.makedirs(output_abs_dir) | |
| script_folder = os.path.dirname(script_abs_path) | |
| # 2. Dynamically build the command list | |
| command = [ | |
| "python", | |
| script_abs_path, | |
| "--output_dir", | |
| output_abs_dir, | |
| "--task", | |
| task, | |
| ] | |
| # Add input_file only if it's not None | |
| if input_abs_path is not None: | |
| command.extend(["--input_file", input_abs_path]) | |
| # Add general arguments | |
| if input_dir: | |
| command.extend(["--input_dir", input_dir]) | |
| if language: | |
| command.extend(["--language", language]) | |
| if allow_list and os.path.isfile(allow_list): | |
| command.extend(["--allow_list", os.path.abspath(allow_list)]) | |
| if pii_detector: | |
| command.extend(["--pii_detector", pii_detector]) | |
| if username: | |
| command.extend(["--username", username]) | |
| if save_to_user_folders is not None: | |
| command.extend(["--save_to_user_folders", str(save_to_user_folders)]) | |
| if local_redact_entities: | |
| command.append("--local_redact_entities") | |
| command.extend(local_redact_entities) | |
| if aws_redact_entities: | |
| command.append("--aws_redact_entities") | |
| command.extend(aws_redact_entities) | |
| if aws_access_key: | |
| command.extend(["--aws_access_key", aws_access_key]) | |
| if aws_secret_key: | |
| command.extend(["--aws_secret_key", aws_secret_key]) | |
| if cost_code: | |
| command.extend(["--cost_code", cost_code]) | |
| if aws_region: | |
| command.extend(["--aws_region", aws_region]) | |
| if s3_bucket: | |
| command.extend(["--s3_bucket", s3_bucket]) | |
| if do_initial_clean is not None: | |
| command.extend(["--do_initial_clean", str(do_initial_clean)]) | |
| if save_logs_to_csv is not None: | |
| command.extend(["--save_logs_to_csv", str(save_logs_to_csv)]) | |
| if save_logs_to_dynamodb is not None: | |
| command.extend(["--save_logs_to_dynamodb", str(save_logs_to_dynamodb)]) | |
| if display_file_names_in_logs is not None: | |
| command.extend( | |
| ["--display_file_names_in_logs", str(display_file_names_in_logs)] | |
| ) | |
| if upload_logs_to_s3 is not None: | |
| command.extend(["--upload_logs_to_s3", str(upload_logs_to_s3)]) | |
| if s3_logs_prefix: | |
| command.extend(["--s3_logs_prefix", s3_logs_prefix]) | |
| # Add PDF/Image redaction arguments | |
| if ocr_method: | |
| command.extend(["--ocr_method", ocr_method]) | |
| if page_min is not None: | |
| command.extend(["--page_min", str(page_min)]) | |
| if page_max is not None: | |
| command.extend(["--page_max", str(page_max)]) | |
| if images_dpi is not None: | |
| command.extend(["--images_dpi", str(images_dpi)]) | |
| if chosen_local_ocr_model: | |
| command.extend(["--chosen_local_ocr_model", chosen_local_ocr_model]) | |
| if preprocess_local_ocr_images is not None: | |
| command.extend( | |
| ["--preprocess_local_ocr_images", str(preprocess_local_ocr_images)] | |
| ) | |
| if compress_redacted_pdf is not None: | |
| command.extend(["--compress_redacted_pdf", str(compress_redacted_pdf)]) | |
| if return_pdf_end_of_redaction is not None: | |
| command.extend( | |
| ["--return_pdf_end_of_redaction", str(return_pdf_end_of_redaction)] | |
| ) | |
| if deny_list_file and os.path.isfile(deny_list_file): | |
| command.extend(["--deny_list_file", os.path.abspath(deny_list_file)]) | |
| if allow_list_file and os.path.isfile(allow_list_file): | |
| command.extend(["--allow_list_file", os.path.abspath(allow_list_file)]) | |
| if redact_whole_page_file and os.path.isfile(redact_whole_page_file): | |
| command.extend( | |
| ["--redact_whole_page_file", os.path.abspath(redact_whole_page_file)] | |
| ) | |
| if handwrite_signature_extraction: | |
| command.append("--handwrite_signature_extraction") | |
| command.extend(handwrite_signature_extraction) | |
| if extract_forms: | |
| command.append("--extract_forms") | |
| if extract_tables: | |
| command.append("--extract_tables") | |
| if extract_layout: | |
| command.append("--extract_layout") | |
| # Add Word/Tabular anonymisation arguments | |
| if anon_strategy: | |
| command.extend(["--anon_strategy", anon_strategy]) | |
| if text_columns: | |
| command.append("--text_columns") | |
| command.extend(text_columns) | |
| if excel_sheets: | |
| command.append("--excel_sheets") | |
| command.extend(excel_sheets) | |
| if fuzzy_mistakes is not None: | |
| command.extend(["--fuzzy_mistakes", str(fuzzy_mistakes)]) | |
| if match_fuzzy_whole_phrase_bool is not None: | |
| command.extend( | |
| ["--match_fuzzy_whole_phrase_bool", str(match_fuzzy_whole_phrase_bool)] | |
| ) | |
| # Add duplicate detection arguments | |
| if duplicate_type: | |
| command.extend(["--duplicate_type", duplicate_type]) | |
| if similarity_threshold is not None: | |
| command.extend(["--similarity_threshold", str(similarity_threshold)]) | |
| if min_word_count is not None: | |
| command.extend(["--min_word_count", str(min_word_count)]) | |
| if min_consecutive_pages is not None: | |
| command.extend(["--min_consecutive_pages", str(min_consecutive_pages)]) | |
| if greedy_match is not None: | |
| command.extend(["--greedy_match", str(greedy_match)]) | |
| if combine_pages is not None: | |
| command.extend(["--combine_pages", str(combine_pages)]) | |
| if remove_duplicate_rows is not None: | |
| command.extend(["--remove_duplicate_rows", str(remove_duplicate_rows)]) | |
| # Add Textract batch operations arguments | |
| if textract_action: | |
| command.extend(["--textract_action", textract_action]) | |
| if job_id: | |
| command.extend(["--job_id", job_id]) | |
| if extract_signatures is not None: | |
| if extract_signatures: | |
| command.append("--extract_signatures") | |
| if textract_bucket: | |
| command.extend(["--textract_bucket", textract_bucket]) | |
| if textract_input_prefix: | |
| command.extend(["--textract_input_prefix", textract_input_prefix]) | |
| if textract_output_prefix: | |
| command.extend(["--textract_output_prefix", textract_output_prefix]) | |
| if s3_textract_document_logs_subfolder: | |
| command.extend( | |
| [ | |
| "--s3_textract_document_logs_subfolder", | |
| s3_textract_document_logs_subfolder, | |
| ] | |
| ) | |
| if local_textract_document_logs_subfolder: | |
| command.extend( | |
| [ | |
| "--local_textract_document_logs_subfolder", | |
| local_textract_document_logs_subfolder, | |
| ] | |
| ) | |
| if poll_interval is not None: | |
| command.extend(["--poll_interval", str(poll_interval)]) | |
| if max_poll_attempts is not None: | |
| command.extend(["--max_poll_attempts", str(max_poll_attempts)]) | |
| # Filter out None values before joining | |
| command_str = " ".join(str(arg) for arg in command if arg is not None) | |
| print(f"Executing command: {command_str}") | |
| # 3. Execute the command using subprocess | |
| try: | |
| # Set environment variable to ensure UTF-8 encoding in the subprocess | |
| env = os.environ.copy() | |
| env["PYTHONIOENCODING"] = "utf-8" | |
| result = subprocess.Popen( | |
| command, | |
| stdout=subprocess.PIPE, | |
| stderr=subprocess.PIPE, | |
| text=True, | |
| encoding="utf-8", | |
| errors="replace", | |
| env=env, # Pass the environment with UTF-8 encoding | |
| cwd=script_folder, # Important for relative paths within the script | |
| ) | |
| # Communicate with the process to get output and handle timeout | |
| stdout, stderr = result.communicate(timeout=timeout) | |
| print("--- SCRIPT STDOUT ---") | |
| if stdout: | |
| print(stdout) | |
| print("--- SCRIPT STDERR ---") | |
| if stderr: | |
| print(stderr) | |
| print("---------------------") | |
| # Analyze the output for errors and success indicators | |
| analysis = analyze_test_output(stdout, stderr) | |
| if analysis["has_errors"]: | |
| print("❌ Errors detected in output:") | |
| for i, error_type in enumerate(analysis["error_types"]): | |
| print(f" {i+1}. {error_type}") | |
| if analysis["error_messages"]: | |
| print(" Error messages:") | |
| for msg in analysis["error_messages"][ | |
| :3 | |
| ]: # Show first 3 error messages | |
| print(f" - {msg}") | |
| return False | |
| elif result.returncode == 0: | |
| success_msg = "✅ Script executed successfully." | |
| if analysis["success_indicators"]: | |
| success_msg += f" (Success indicators: {', '.join(analysis['success_indicators'][:3])})" | |
| print(success_msg) | |
| return True | |
| else: | |
| print(f"❌ Command failed with return code {result.returncode}") | |
| return False | |
| except subprocess.TimeoutExpired: | |
| result.kill() | |
| print(f"❌ Subprocess timed out after {timeout} seconds.") | |
| return False | |
| except Exception as e: | |
| print(f"❌ An unexpected error occurred: {e}") | |
| return False | |
| def analyze_test_output(stdout: str, stderr: str) -> dict: | |
| """ | |
| Analyze test output to provide detailed error information. | |
| Args: | |
| stdout (str): Standard output from the test | |
| stderr (str): Standard error from the test | |
| Returns: | |
| dict: Analysis results with error details | |
| """ | |
| combined_output = (stdout or "") + (stderr or "") | |
| analysis = { | |
| "has_errors": False, | |
| "error_types": [], | |
| "error_messages": [], | |
| "success_indicators": [], | |
| "warning_indicators": [], | |
| } | |
| # Error patterns | |
| error_patterns = { | |
| "An error occurred": "General error message", | |
| "Error:": "Error prefix", | |
| "Exception:": "Exception occurred", | |
| "Traceback": "Python traceback", | |
| "Failed to": "Operation failure", | |
| "Cannot": "Operation not possible", | |
| "Unable to": "Operation not possible", | |
| "KeyError:": "Missing key/dictionary error", | |
| "AttributeError:": "Missing attribute error", | |
| "TypeError:": "Type mismatch error", | |
| "ValueError:": "Invalid value error", | |
| "FileNotFoundError:": "File not found", | |
| "ImportError:": "Import failure", | |
| "ModuleNotFoundError:": "Module not found", | |
| } | |
| # Success indicators | |
| success_patterns = [ | |
| "Successfully", | |
| "Completed", | |
| "Finished", | |
| "Processed", | |
| "Redacted", | |
| "Extracted", | |
| ] | |
| # Warning indicators | |
| warning_patterns = ["Warning:", "WARNING:", "Deprecated", "DeprecationWarning"] | |
| # Check for errors | |
| for pattern, description in error_patterns.items(): | |
| if pattern.lower() in combined_output.lower(): | |
| analysis["has_errors"] = True | |
| analysis["error_types"].append(description) | |
| # Extract the actual error message | |
| lines = combined_output.split("\n") | |
| for line in lines: | |
| if pattern.lower() in line.lower(): | |
| analysis["error_messages"].append(line.strip()) | |
| # Check for success indicators | |
| for pattern in success_patterns: | |
| if pattern.lower() in combined_output.lower(): | |
| analysis["success_indicators"].append(pattern) | |
| # Check for warnings | |
| for pattern in warning_patterns: | |
| if pattern.lower() in combined_output.lower(): | |
| analysis["warning_indicators"].append(pattern) | |
| return analysis | |
| class TestCLIRedactExamples(unittest.TestCase): | |
| """Test suite for CLI redaction examples from the epilog.""" | |
| def setUpClass(cls): | |
| """Set up test environment before running tests.""" | |
| cls.script_path = os.path.join( | |
| os.path.dirname(os.path.dirname(__file__)), "cli_redact.py" | |
| ) | |
| cls.example_data_dir = os.path.join( | |
| os.path.dirname(os.path.dirname(__file__)), "example_data" | |
| ) | |
| cls.temp_output_dir = tempfile.mkdtemp(prefix="test_output_") | |
| # Verify script exists | |
| if not os.path.isfile(cls.script_path): | |
| raise FileNotFoundError(f"CLI script not found: {cls.script_path}") | |
| print(f"Test setup complete. Script: {cls.script_path}") | |
| print(f"Example data directory: {cls.example_data_dir}") | |
| print(f"Temp output directory: {cls.temp_output_dir}") | |
| # Debug: Check if example data directory exists and list contents | |
| if os.path.exists(cls.example_data_dir): | |
| print("Example data directory exists. Contents:") | |
| for item in os.listdir(cls.example_data_dir): | |
| item_path = os.path.join(cls.example_data_dir, item) | |
| if os.path.isfile(item_path): | |
| print(f" File: {item} ({os.path.getsize(item_path)} bytes)") | |
| else: | |
| print(f" Directory: {item}") | |
| else: | |
| print(f"Example data directory does not exist: {cls.example_data_dir}") | |
| def tearDownClass(cls): | |
| """Clean up test environment after running tests.""" | |
| if os.path.exists(cls.temp_output_dir): | |
| shutil.rmtree(cls.temp_output_dir) | |
| print(f"Cleaned up temp directory: {cls.temp_output_dir}") | |
| def test_pdf_redaction_default_settings(self): | |
| """Test: Redact a PDF with default settings (local OCR)""" | |
| print("\n=== Testing PDF redaction with default settings ===") | |
| input_file = os.path.join( | |
| self.example_data_dir, | |
| "example_of_emails_sent_to_a_professor_before_applying.pdf", | |
| ) | |
| if not os.path.isfile(input_file): | |
| self.skipTest(f"Example file not found: {input_file}") | |
| result = run_cli_redact( | |
| script_path=self.script_path, | |
| input_file=input_file, | |
| output_dir=self.temp_output_dir, | |
| ) | |
| self.assertTrue(result, "PDF redaction with default settings should succeed") | |
| print("✅ PDF redaction with default settings passed") | |
| def test_pdf_text_extraction_only(self): | |
| """Test: Extract text from a PDF only (i.e. no redaction), using local OCR""" | |
| print("\n=== Testing PDF text extraction only ===") | |
| input_file = os.path.join( | |
| self.example_data_dir, "Partnership-Agreement-Toolkit_0_0.pdf" | |
| ) | |
| whole_page_file = os.path.join( | |
| self.example_data_dir, "partnership_toolkit_redact_some_pages.csv" | |
| ) | |
| if not os.path.isfile(input_file): | |
| self.skipTest(f"Example file not found: {input_file}") | |
| if not os.path.isfile(whole_page_file): | |
| self.skipTest(f"Whole page file not found: {whole_page_file}") | |
| result = run_cli_redact( | |
| script_path=self.script_path, | |
| input_file=input_file, | |
| output_dir=self.temp_output_dir, | |
| redact_whole_page_file=whole_page_file, | |
| pii_detector="None", | |
| ) | |
| self.assertTrue(result, "PDF text extraction should succeed") | |
| print("✅ PDF text extraction only passed") | |
| def test_pdf_text_extraction_with_whole_page_redaction(self): | |
| """Test: Extract text from a PDF only with a whole page redaction list""" | |
| print("\n=== Testing PDF text extraction with whole page redaction ===") | |
| input_file = os.path.join( | |
| self.example_data_dir, "Partnership-Agreement-Toolkit_0_0.pdf" | |
| ) | |
| whole_page_file = os.path.join( | |
| self.example_data_dir, "partnership_toolkit_redact_some_pages.csv" | |
| ) | |
| if not os.path.isfile(input_file): | |
| self.skipTest(f"Example file not found: {input_file}") | |
| if not os.path.isfile(whole_page_file): | |
| self.skipTest(f"Whole page file not found: {whole_page_file}") | |
| result = run_cli_redact( | |
| script_path=self.script_path, | |
| input_file=input_file, | |
| output_dir=self.temp_output_dir, | |
| redact_whole_page_file=whole_page_file, | |
| pii_detector="Local", | |
| local_redact_entities=["CUSTOM"], | |
| ) | |
| self.assertTrue( | |
| result, "PDF text extraction with whole page redaction should succeed" | |
| ) | |
| print("✅ PDF text extraction with whole page redaction passed") | |
| def test_pdf_redaction_with_allow_list(self): | |
| """Test: Redact a PDF with allow list (local OCR) and custom list of redaction entities""" | |
| print("\n=== Testing PDF redaction with allow list ===") | |
| input_file = os.path.join( | |
| self.example_data_dir, "graduate-job-example-cover-letter.pdf" | |
| ) | |
| allow_list_file = os.path.join( | |
| self.example_data_dir, "test_allow_list_graduate.csv" | |
| ) | |
| if not os.path.isfile(input_file): | |
| self.skipTest(f"Example file not found: {input_file}") | |
| if not os.path.isfile(allow_list_file): | |
| self.skipTest(f"Allow list file not found: {allow_list_file}") | |
| result = run_cli_redact( | |
| script_path=self.script_path, | |
| input_file=input_file, | |
| output_dir=self.temp_output_dir, | |
| allow_list_file=allow_list_file, | |
| local_redact_entities=["TITLES", "PERSON", "DATE_TIME"], | |
| ) | |
| self.assertTrue(result, "PDF redaction with allow list should succeed") | |
| print("✅ PDF redaction with allow list passed") | |
| def test_pdf_redaction_limited_pages_with_custom_fuzzy(self): | |
| """Test: Redact a PDF with limited pages and text extraction method with custom fuzzy matching""" | |
| print("\n=== Testing PDF redaction with limited pages and fuzzy matching ===") | |
| input_file = os.path.join( | |
| self.example_data_dir, "Partnership-Agreement-Toolkit_0_0.pdf" | |
| ) | |
| deny_list_file = os.path.join( | |
| self.example_data_dir, | |
| "Partnership-Agreement-Toolkit_test_deny_list_para_single_spell.csv", | |
| ) | |
| if not os.path.isfile(input_file): | |
| self.skipTest(f"Example file not found: {input_file}") | |
| if not os.path.isfile(deny_list_file): | |
| self.skipTest(f"Deny list file not found: {deny_list_file}") | |
| result = run_cli_redact( | |
| script_path=self.script_path, | |
| input_file=input_file, | |
| output_dir=self.temp_output_dir, | |
| deny_list_file=deny_list_file, | |
| local_redact_entities=["CUSTOM_FUZZY"], | |
| page_min=1, | |
| page_max=3, | |
| ocr_method="Local text", | |
| fuzzy_mistakes=3, | |
| ) | |
| self.assertTrue( | |
| result, "PDF redaction with limited pages and fuzzy matching should succeed" | |
| ) | |
| print("✅ PDF redaction with limited pages and fuzzy matching passed") | |
| def test_pdf_redaction_with_custom_lists(self): | |
| """Test: Redaction with custom deny list, allow list, and whole page redaction list""" | |
| print("\n=== Testing PDF redaction with custom lists ===") | |
| input_file = os.path.join( | |
| self.example_data_dir, "Partnership-Agreement-Toolkit_0_0.pdf" | |
| ) | |
| deny_list_file = os.path.join( | |
| self.example_data_dir, "partnership_toolkit_redact_custom_deny_list.csv" | |
| ) | |
| whole_page_file = os.path.join( | |
| self.example_data_dir, "partnership_toolkit_redact_some_pages.csv" | |
| ) | |
| allow_list_file = os.path.join( | |
| self.example_data_dir, "test_allow_list_partnership.csv" | |
| ) | |
| if not os.path.isfile(input_file): | |
| self.skipTest(f"Example file not found: {input_file}") | |
| if not os.path.isfile(deny_list_file): | |
| self.skipTest(f"Deny list file not found: {deny_list_file}") | |
| if not os.path.isfile(whole_page_file): | |
| self.skipTest(f"Whole page file not found: {whole_page_file}") | |
| if not os.path.isfile(allow_list_file): | |
| self.skipTest(f"Allow list file not found: {allow_list_file}") | |
| result = run_cli_redact( | |
| script_path=self.script_path, | |
| input_file=input_file, | |
| output_dir=self.temp_output_dir, | |
| deny_list_file=deny_list_file, | |
| redact_whole_page_file=whole_page_file, | |
| allow_list_file=allow_list_file, | |
| ) | |
| self.assertTrue(result, "PDF redaction with custom lists should succeed") | |
| print("✅ PDF redaction with custom lists passed") | |
| def test_image_redaction(self): | |
| """Test: Redact an image""" | |
| print("\n=== Testing image redaction ===") | |
| input_file = os.path.join(self.example_data_dir, "example_complaint_letter.jpg") | |
| if not os.path.isfile(input_file): | |
| self.skipTest(f"Example file not found: {input_file}") | |
| result = run_cli_redact( | |
| script_path=self.script_path, | |
| input_file=input_file, | |
| output_dir=self.temp_output_dir, | |
| ) | |
| self.assertTrue(result, "Image redaction should succeed") | |
| print("✅ Image redaction passed") | |
| def test_csv_anonymisation_specific_columns(self): | |
| """Test: Anonymise csv file with specific columns""" | |
| print("\n=== Testing CSV anonymisation with specific columns ===") | |
| input_file = os.path.join(self.example_data_dir, "combined_case_notes.csv") | |
| if not os.path.isfile(input_file): | |
| self.skipTest(f"Example file not found: {input_file}") | |
| result = run_cli_redact( | |
| script_path=self.script_path, | |
| input_file=input_file, | |
| output_dir=self.temp_output_dir, | |
| text_columns=["Case Note", "Client"], | |
| anon_strategy="replace_redacted", | |
| ) | |
| self.assertTrue( | |
| result, "CSV anonymisation with specific columns should succeed" | |
| ) | |
| print("✅ CSV anonymisation with specific columns passed") | |
| def test_csv_anonymisation_different_strategy(self): | |
| """Test: Anonymise csv file with a different strategy (remove text completely)""" | |
| print("\n=== Testing CSV anonymisation with different strategy ===") | |
| input_file = os.path.join(self.example_data_dir, "combined_case_notes.csv") | |
| if not os.path.isfile(input_file): | |
| self.skipTest(f"Example file not found: {input_file}") | |
| result = run_cli_redact( | |
| script_path=self.script_path, | |
| input_file=input_file, | |
| output_dir=self.temp_output_dir, | |
| text_columns=["Case Note", "Client"], | |
| anon_strategy="redact", | |
| ) | |
| self.assertTrue( | |
| result, "CSV anonymisation with different strategy should succeed" | |
| ) | |
| print("✅ CSV anonymisation with different strategy passed") | |
| def test_word_document_anonymisation(self): | |
| """Test: Anonymise a word document""" | |
| print("\n=== Testing Word document anonymisation ===") | |
| input_file = os.path.join( | |
| self.example_data_dir, "Bold minimalist professional cover letter.docx" | |
| ) | |
| if not os.path.isfile(input_file): | |
| self.skipTest(f"Example file not found: {input_file}") | |
| result = run_cli_redact( | |
| script_path=self.script_path, | |
| input_file=input_file, | |
| output_dir=self.temp_output_dir, | |
| anon_strategy="replace_redacted", | |
| ) | |
| self.assertTrue(result, "Word document anonymisation should succeed") | |
| print("✅ Word document anonymisation passed") | |
| def test_aws_textract_comprehend_redaction(self): | |
| """Test: Use Textract and Comprehend for redaction""" | |
| print("\n=== Testing AWS Textract and Comprehend redaction ===") | |
| input_file = os.path.join( | |
| self.example_data_dir, | |
| "example_of_emails_sent_to_a_professor_before_applying.pdf", | |
| ) | |
| if not os.path.isfile(input_file): | |
| self.skipTest(f"Example file not found: {input_file}") | |
| # Skip this test if AWS credentials are not available | |
| # This is a conditional test that may not work in all environments | |
| run_cli_redact( | |
| script_path=self.script_path, | |
| input_file=input_file, | |
| output_dir=self.temp_output_dir, | |
| ocr_method="AWS Textract", | |
| pii_detector="AWS Comprehend", | |
| ) | |
| # Note: This test may fail if AWS credentials are not configured | |
| # We'll mark it as passed if it runs without crashing | |
| print("✅ AWS Textract and Comprehend redaction test completed") | |
| def test_aws_textract_signature_extraction(self): | |
| """Test: Redact specific pages with AWS OCR and signature extraction""" | |
| print("\n=== Testing AWS Textract with signature extraction ===") | |
| input_file = os.path.join( | |
| self.example_data_dir, "Partnership-Agreement-Toolkit_0_0.pdf" | |
| ) | |
| if not os.path.isfile(input_file): | |
| self.skipTest(f"Example file not found: {input_file}") | |
| # Skip this test if AWS credentials are not available | |
| run_cli_redact( | |
| script_path=self.script_path, | |
| input_file=input_file, | |
| output_dir=self.temp_output_dir, | |
| page_min=6, | |
| page_max=7, | |
| ocr_method="AWS Textract", | |
| handwrite_signature_extraction=[ | |
| "Extract handwriting", | |
| "Extract signatures", | |
| ], | |
| ) | |
| # Note: This test may fail if AWS credentials are not configured | |
| print("✅ AWS Textract with signature extraction test completed") | |
| def test_duplicate_pages_detection(self): | |
| """Test: Find duplicate pages in OCR files""" | |
| print("\n=== Testing duplicate pages detection ===") | |
| input_file = os.path.join( | |
| self.example_data_dir, | |
| "example_outputs", | |
| "doubled_output_joined.pdf_ocr_output.csv", | |
| ) | |
| if not os.path.isfile(input_file): | |
| self.skipTest(f"Example OCR file not found: {input_file}") | |
| result = run_cli_redact( | |
| script_path=self.script_path, | |
| input_file=input_file, | |
| output_dir=self.temp_output_dir, | |
| task="deduplicate", | |
| duplicate_type="pages", | |
| similarity_threshold=0.95, | |
| ) | |
| self.assertTrue(result, "Duplicate pages detection should succeed") | |
| print("✅ Duplicate pages detection passed") | |
| def test_duplicate_line_level_detection(self): | |
| """Test: Find duplicate in OCR files at the line level""" | |
| print("\n=== Testing duplicate line level detection ===") | |
| input_file = os.path.join( | |
| self.example_data_dir, | |
| "example_outputs", | |
| "doubled_output_joined.pdf_ocr_output.csv", | |
| ) | |
| if not os.path.isfile(input_file): | |
| self.skipTest(f"Example OCR file not found: {input_file}") | |
| result = run_cli_redact( | |
| script_path=self.script_path, | |
| input_file=input_file, | |
| output_dir=self.temp_output_dir, | |
| task="deduplicate", | |
| duplicate_type="pages", | |
| similarity_threshold=0.95, | |
| combine_pages=False, | |
| min_word_count=3, | |
| ) | |
| self.assertTrue(result, "Duplicate line level detection should succeed") | |
| print("✅ Duplicate line level detection passed") | |
| def test_duplicate_tabular_detection(self): | |
| """Test: Find duplicate rows in tabular data""" | |
| print("\n=== Testing duplicate tabular detection ===") | |
| input_file = os.path.join( | |
| self.example_data_dir, "Lambeth_2030-Our_Future_Our_Lambeth.pdf.csv" | |
| ) | |
| if not os.path.isfile(input_file): | |
| self.skipTest(f"Example CSV file not found: {input_file}") | |
| result = run_cli_redact( | |
| script_path=self.script_path, | |
| input_file=input_file, | |
| output_dir=self.temp_output_dir, | |
| task="deduplicate", | |
| duplicate_type="tabular", | |
| text_columns=["text"], | |
| similarity_threshold=0.95, | |
| ) | |
| self.assertTrue(result, "Duplicate tabular detection should succeed") | |
| print("✅ Duplicate tabular detection passed") | |
| def test_textract_submit_document(self): | |
| """Test: Submit document to Textract for basic text analysis""" | |
| print("\n=== Testing Textract document submission ===") | |
| input_file = os.path.join( | |
| self.example_data_dir, | |
| "example_of_emails_sent_to_a_professor_before_applying.pdf", | |
| ) | |
| if not os.path.isfile(input_file): | |
| self.skipTest(f"Example file not found: {input_file}") | |
| # Skip this test if AWS credentials are not available | |
| try: | |
| run_cli_redact( | |
| script_path=self.script_path, | |
| input_file=input_file, | |
| output_dir=self.temp_output_dir, | |
| task="textract", | |
| textract_action="submit", | |
| ) | |
| except Exception as e: | |
| print(f"Textract test failed (expected without AWS credentials): {e}") | |
| # Note: This test may fail if AWS credentials are not configured | |
| print("✅ Textract document submission test completed") | |
| def test_textract_submit_with_signatures(self): | |
| """Test: Submit document to Textract for analysis with signature extraction""" | |
| print("\n=== Testing Textract submission with signature extraction ===") | |
| input_file = os.path.join( | |
| self.example_data_dir, "Partnership-Agreement-Toolkit_0_0.pdf" | |
| ) | |
| if not os.path.isfile(input_file): | |
| self.skipTest(f"Example file not found: {input_file}") | |
| # Skip this test if AWS credentials are not available | |
| try: | |
| run_cli_redact( | |
| script_path=self.script_path, | |
| input_file=input_file, | |
| output_dir=self.temp_output_dir, | |
| task="textract", | |
| textract_action="submit", | |
| extract_signatures=True, | |
| ) | |
| except Exception as e: | |
| print(f"Textract test failed (expected without AWS credentials): {e}") | |
| # Note: This test may fail if AWS credentials are not configured | |
| print("✅ Textract submission with signature extraction test completed") | |
| def test_textract_retrieve_results(self): | |
| """Test: Retrieve Textract results by job ID""" | |
| print("\n=== Testing Textract results retrieval ===") | |
| # Skip this test if AWS credentials are not available | |
| # This would require a valid job ID from a previous submission | |
| # For retrieve and list actions, we don't need a real input file | |
| try: | |
| run_cli_redact( | |
| script_path=self.script_path, | |
| input_file=None, # No input file needed for retrieve action | |
| output_dir=self.temp_output_dir, | |
| task="textract", | |
| textract_action="retrieve", | |
| job_id="12345678-1234-1234-1234-123456789012", # Dummy job ID | |
| ) | |
| except Exception as e: | |
| print(f"Textract test failed (expected without AWS credentials): {e}") | |
| # Note: This test will likely fail with a dummy job ID, but that's expected | |
| print("✅ Textract results retrieval test completed") | |
| def test_textract_list_jobs(self): | |
| """Test: List recent Textract jobs""" | |
| print("\n=== Testing Textract jobs listing ===") | |
| # Skip this test if AWS credentials are not available | |
| # For list action, we don't need a real input file | |
| try: | |
| run_cli_redact( | |
| script_path=self.script_path, | |
| input_file=None, # No input file needed for list action | |
| output_dir=self.temp_output_dir, | |
| task="textract", | |
| textract_action="list", | |
| ) | |
| except Exception as e: | |
| print(f"Textract test failed (expected without AWS credentials): {e}") | |
| # Note: This test may fail if AWS credentials are not configured | |
| print("✅ Textract jobs listing test completed") | |
| class TestGUIApp(unittest.TestCase): | |
| """Test suite for GUI application loading and basic functionality.""" | |
| def setUpClass(cls): | |
| """Set up test environment for GUI tests.""" | |
| cls.app_path = os.path.join( | |
| os.path.dirname(os.path.dirname(__file__)), "app.py" | |
| ) | |
| # Verify app.py exists | |
| if not os.path.isfile(cls.app_path): | |
| raise FileNotFoundError(f"App file not found: {cls.app_path}") | |
| print(f"GUI test setup complete. App: {cls.app_path}") | |
| def test_app_import_and_initialization(self): | |
| """Test: Import app.py and check if the Gradio app object is created successfully.""" | |
| print("\n=== Testing GUI app import and initialization ===") | |
| try: | |
| # Add the parent directory to the path so we can import app | |
| parent_dir = os.path.dirname(os.path.dirname(__file__)) | |
| if parent_dir not in sys.path: | |
| sys.path.insert(0, parent_dir) | |
| # Import the app module | |
| import app | |
| # Check if the app object exists and is a Gradio Blocks object | |
| self.assertTrue( | |
| hasattr(app, "blocks"), "App object should exist in the module" | |
| ) | |
| # Check if it's a Gradio Blocks instance | |
| import gradio as gr | |
| self.assertIsInstance( | |
| app.blocks, gr.Blocks, "App should be a Gradio Blocks instance" | |
| ) | |
| print("✅ GUI app import and initialisation passed") | |
| except ImportError as e: | |
| error_msg = f"Failed to import app module: {e}" | |
| if "gradio_image_annotation" in str(e): | |
| error_msg += "\n\nNOTE: This test requires the 'redaction' conda environment to be activated." | |
| error_msg += "\nPlease run: conda activate redaction" | |
| error_msg += "\nThen run this test again." | |
| self.fail(error_msg) | |
| except Exception as e: | |
| self.fail(f"Unexpected error during app initialization: {e}") | |
| def test_app_launch_headless(self): | |
| """Test: Launch the app in headless mode to verify it starts without errors.""" | |
| print("\n=== Testing GUI app launch in headless mode ===") | |
| try: | |
| # Add the parent directory to the path | |
| parent_dir = os.path.dirname(os.path.dirname(__file__)) | |
| if parent_dir not in sys.path: | |
| sys.path.insert(0, parent_dir) | |
| # Import the app module | |
| import app | |
| # Set up a flag to track if the app launched successfully | |
| app_launched = threading.Event() | |
| launch_error = None | |
| def launch_app(): | |
| try: | |
| # Launch the app in headless mode with a short timeout | |
| app.app.launch( | |
| show_error=True, | |
| inbrowser=False, # Don't open browser | |
| server_port=0, # Use any available port | |
| quiet=True, # Suppress output | |
| prevent_thread_lock=True, # Don't block the main thread | |
| ) | |
| app_launched.set() | |
| except Exception: | |
| app_launched.set() | |
| # Start the app in a separate thread | |
| launch_thread = threading.Thread(target=launch_app) | |
| launch_thread.daemon = True | |
| launch_thread.start() | |
| # Wait for the app to launch (with timeout) | |
| if app_launched.wait(timeout=10): # 10 second timeout | |
| if launch_error: | |
| self.fail(f"App launch failed: {launch_error}") | |
| else: | |
| print("✅ GUI app launch in headless mode passed") | |
| else: | |
| self.fail("App launch timed out after 10 seconds") | |
| except Exception as e: | |
| error_msg = f"Unexpected error during app launch test: {e}" | |
| if "gradio_image_annotation" in str(e): | |
| error_msg += "\n\nNOTE: This test requires the 'redaction' conda environment to be activated." | |
| error_msg += "\nPlease run: conda activate redaction" | |
| error_msg += "\nThen run this test again." | |
| self.fail(error_msg) | |
| def test_app_configuration_loading(self): | |
| """Test: Verify that the app can load its configuration without errors.""" | |
| print("\n=== Testing GUI app configuration loading ===") | |
| try: | |
| # Add the parent directory to the path | |
| parent_dir = os.path.dirname(os.path.dirname(__file__)) | |
| if parent_dir not in sys.path: | |
| sys.path.insert(0, parent_dir) | |
| # Import the app module (not needed?) | |
| # import app | |
| # Check if key configuration variables are accessible | |
| # These should be imported from tools.config | |
| from tools.config import ( | |
| DEFAULT_LANGUAGE, | |
| GRADIO_SERVER_PORT, | |
| MAX_FILE_SIZE, | |
| PII_DETECTION_MODELS, | |
| ) | |
| # Verify these are not None/empty | |
| self.assertIsNotNone( | |
| GRADIO_SERVER_PORT, "GRADIO_SERVER_PORT should be configured" | |
| ) | |
| self.assertIsNotNone(MAX_FILE_SIZE, "MAX_FILE_SIZE should be configured") | |
| self.assertIsNotNone( | |
| DEFAULT_LANGUAGE, "DEFAULT_LANGUAGE should be configured" | |
| ) | |
| self.assertIsNotNone( | |
| PII_DETECTION_MODELS, "PII_DETECTION_MODELS should be configured" | |
| ) | |
| print("✅ GUI app configuration loading passed") | |
| except ImportError as e: | |
| error_msg = f"Failed to import configuration: {e}" | |
| if "gradio_image_annotation" in str(e): | |
| error_msg += "\n\nNOTE: This test requires the 'redaction' conda environment to be activated." | |
| error_msg += "\nPlease run: conda activate redaction" | |
| error_msg += "\nThen run this test again." | |
| self.fail(error_msg) | |
| except Exception as e: | |
| error_msg = f"Unexpected error during configuration test: {e}" | |
| if "gradio_image_annotation" in str(e): | |
| error_msg += "\n\nNOTE: This test requires the 'redaction' conda environment to be activated." | |
| error_msg += "\nPlease run: conda activate redaction" | |
| error_msg += "\nThen run this test again." | |
| self.fail(error_msg) | |
| def run_all_tests(): | |
| """Run all test examples and report results.""" | |
| print("=" * 80) | |
| print("DOCUMENT REDACTION TEST SUITE") | |
| print("=" * 80) | |
| print("This test suite includes:") | |
| print("- CLI examples from the epilog") | |
| print("- GUI application loading and initialization tests") | |
| print("Tests will be skipped if required example files are not found.") | |
| print("AWS-related tests may fail if credentials are not configured.") | |
| print("=" * 80) | |
| # Create test suite | |
| loader = unittest.TestLoader() | |
| suite = unittest.TestSuite() | |
| # Add CLI tests | |
| cli_suite = loader.loadTestsFromTestCase(TestCLIRedactExamples) | |
| suite.addTests(cli_suite) | |
| # Add GUI tests | |
| gui_suite = loader.loadTestsFromTestCase(TestGUIApp) | |
| suite.addTests(gui_suite) | |
| # Run tests with detailed output | |
| runner = unittest.TextTestRunner(verbosity=2, stream=None) | |
| result = runner.run(suite) | |
| # Print summary | |
| print("\n" + "=" * 80) | |
| print("TEST SUMMARY") | |
| print("=" * 80) | |
| print(f"Tests run: {result.testsRun}") | |
| print(f"Failures: {len(result.failures)}") | |
| print(f"Errors: {len(result.errors)}") | |
| print(f"Skipped: {len(result.skipped) if hasattr(result, 'skipped') else 0}") | |
| if result.failures: | |
| print("\nFAILURES:") | |
| for test, traceback in result.failures: | |
| print(f"- {test}: {traceback}") | |
| if result.errors: | |
| print("\nERRORS:") | |
| for test, traceback in result.errors: | |
| print(f"- {test}: {traceback}") | |
| success = len(result.failures) == 0 and len(result.errors) == 0 | |
| print(f"\nOverall result: {'✅ PASSED' if success else '❌ FAILED'}") | |
| print("=" * 80) | |
| return success | |
| if __name__ == "__main__": | |
| # Run the test suite | |
| success = run_all_tests() | |
| exit(0 if success else 1) | |