data/sim/adapter_dimer_f30/run.json

{
  "name": "adapter_dimer_f30",
  "sim_version": "1.0",
  "spec_id": "10x_3p_v3",
  "failure_mode": "adapter_dimer",
  "seed": 1729,
  "params": {
    "affected_fraction": 0.3,
    "dimer_fraction": 0.33,
    "readthrough_insert_len": {
      "min": 0,
      "max": 30
    },
    "polyA_len": {
      "min": 5,
      "max": 20
    },
    "quality": {
      "phred": 37,
      "overlay_insert": true
    }
  },
  "n_pairs": 40000,
  "label_counts": {
    "pure_dimer": 3889,
    "clean": 28060,
    "readthrough": 8051
  },
  "label_fractions": {
    "pure_dimer": 0.0972,
    "clean": 0.7015,
    "readthrough": 0.2013
  },
  "inputs": {
    "r1": "data/raw/pbmc_1k_v3_sub_R1.fastq.gz",
    "r2": "data/raw/pbmc_1k_v3_sub_R2.fastq.gz"
  },
  "outputs": {
    "r1": "data/sim/adapter_dimer_f30/R1.fastq.gz",
    "r2": "data/sim/adapter_dimer_f30/R2.fastq.gz",
    "labels": "sim/labels/adapter_dimer_f30.tsv"
  },
  "r1_input_md5": "3d44d9b881859fad2f05637ebfe2b64a",
  "r1_output_md5": "3d44d9b881859fad2f05637ebfe2b64a",
  "r1_byte_identical": true,
  "python": "3.11.15"
}