spec/technologies/cel_seq2.crosscheck.json

{
  "folder": "cel_seq2",
  "title": "CEL-Seq2",
  "crosscheck": {
    "status": "checked",
    "source_html_file": "CEL-seq_family.html",
    "oligo_seq_recall": 0.643,
    "oligo_seqs_matched": 9,
    "oligo_seqs_total": 14,
    "missed_oligos": [
      "Illumina RA3 adapter (TruSeq Small RNA kit)",
      "Illumina RA5 adapter (TruSeq Small RNA kit)",
      "Illumina RP1 primer (TruSeq Small RNA kit)",
      "Index read primer",
      "T7 promoter"
    ],
    "annotated_library_exact_match": true,
    "annotated_library_got": "AATGATACGGCGACCACCGAGATCTACACGTTCAGAGTTCTACAGTCCGACGATC[UMI:6][CELL_BARCODE:6]TTTTTTTTTTTTTTTTTTTTTTTTV[CDNA]TGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC[SAMPLE_INDEX:6]ATCTCGTATGCCGTCTTCTGCTTG",
    "annotated_library_expected": "AATGATACGGCGACCACCGAGATCTACACGTTCAGAGTTCTACAGTCCGACGATC[UMI:6][CELL_BARCODE:6]TTTTTTTTTTTTTTTTTTTTTTTTV[CDNA]TGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC[SAMPLE_INDEX:6]ATCTCGTATGCCGTCTTCTGCTTG",
    "barcode_umi_length_diffs": {},
    "big_conflict": false
  }
}