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Runtime error
Runtime error
Commit Β·
ad646a4
1
Parent(s): ce15187
Upload 7 files
Browse files- .gitattributes +2 -0
- app.py +81 -0
- data/drugsComTest_raw.csv +3 -0
- data/drugsComTrain_raw.csv +3 -0
- model/passmodel.pkl +3 -0
- model/tfidfvectorizer.pkl +3 -0
- requirements.txt +0 -0
- style.css +4 -0
.gitattributes
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@@ -32,3 +32,5 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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*.zip filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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*tfevents* filter=lfs diff=lfs merge=lfs -text
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*.zip filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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*tfevents* filter=lfs diff=lfs merge=lfs -text
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data/drugsComTest_raw.csv filter=lfs diff=lfs merge=lfs -text
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data/drugsComTrain_raw.csv filter=lfs diff=lfs merge=lfs -text
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app.py
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import os
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import joblib
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import pandas as pd
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import re
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import nltk
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import streamlit as st
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import numpy as np
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from nltk.stem import WordNetLemmatizer
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from nltk.corpus import stopwords
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from bs4 import BeautifulSoup
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# Model saved with Keras model.save()
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MODEL_PATH = 'model/passmodel.pkl'
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TOKENIZER_PATH ='model/tfidfvectorizer.pkl'
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DATA_PATH ='data/drugsComTrain_raw.csv'
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# loading vectorizer
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vectorizer = joblib.load(TOKENIZER_PATH)
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# loading model
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model = joblib.load(MODEL_PATH)
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#getting stopwords
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stop = stopwords.words('english')
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lemmatizer = WordNetLemmatizer()
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st.set_page_config(page_title='PDDRS', page_icon='π¨ββοΈ')
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st.title("π Patient Diagnosis and Drug Recommendation System π")
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st.header("Enter Patient Condition:")
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raw_text = st.text_input('')
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def predict(raw_text):
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global predicted_cond
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global top_drugs
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if raw_text != "":
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clean_text = cleanText(raw_text)
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clean_lst = [clean_text]
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tfidf_vect = vectorizer.transform(clean_lst)
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prediction = model.predict(tfidf_vect)
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predicted_cond = prediction[0]
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df = pd.read_csv(DATA_PATH)
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top_drugs = top_drugs_extractor(predicted_cond,df)
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def cleanText(raw_review):
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# 1. Delete HTML
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review_text = BeautifulSoup(raw_review, 'html.parser').get_text()
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# 2. Make a space
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letters_only = re.sub('[^a-zA-Z]', ' ', review_text)
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# 3. lower letters
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words = letters_only.lower().split()
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# 5. Stopwords
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meaningful_words = [w for w in words if not w in stop]
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# 6. lemmitization
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lemmitize_words = [lemmatizer.lemmatize(w) for w in meaningful_words]
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# 7. space join words
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return( ' '.join(lemmitize_words))
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def top_drugs_extractor(condition,df):
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df_top = df[(df['rating']>=9)&(df['usefulCount']>=100)].sort_values(by = ['rating', 'usefulCount'], ascending = [False, False])
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drug_lst = df_top[df_top['condition']==condition]['drugName'].head(3).tolist()
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return drug_lst
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predict_button = st.button("Predict")
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if predict_button:
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predict(raw_text)
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st.header('Condition Predicted')
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st.subheader(predicted_cond)
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st.header('Top 3 Drugs Recommended')
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if top_drugs[0] == top_drugs[1]:
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st.subheader(top_drugs[0])
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else:
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st.subheader(top_drugs[0])
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st.subheader(top_drugs[1])
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st.subheader(top_drugs[2])
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with open('style.css')as f:
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st.markdown(f"<style>{f.read()}</style>", unsafe_allow_html = True)
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data/drugsComTest_raw.csv
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version https://git-lfs.github.com/spec/v1
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oid sha256:1953e81451b3a43f162e3d438dc1f9c2ee83c9283968a19fce4d3736fdb03eac
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size 28071166
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data/drugsComTrain_raw.csv
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version https://git-lfs.github.com/spec/v1
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oid sha256:bc0902b21af0db5b99568a7639ed5f7dad3494a8186a20d05c5b4016c6caedf4
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size 82990470
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model/passmodel.pkl
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version https://git-lfs.github.com/spec/v1
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oid sha256:f22688277f5420d94a9be0b56cfca1b898013a96cbdd417cfe80cd51310e7110
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size 74845516
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model/tfidfvectorizer.pkl
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version https://git-lfs.github.com/spec/v1
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oid sha256:6caaf578520a735219f0ec253fca79d9c56603b63566388e3f1343226dbd20fd
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size 48320680
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requirements.txt
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Binary file (726 Bytes). View file
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style.css
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#patient-diagnosis-and-drug-recommendation-system{
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font-size: 40px;
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text-align: center;
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}
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