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app.py
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import pandas as pd
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import numpy as np
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import streamlit as st
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import faiss
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from sentence_transformers import SentenceTransformer
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from symspellpy import SymSpell, Verbosity
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# ----------------------
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# Data Preparation
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# ----------------------
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def preprocess_data(file_path):
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# Load dataset
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df = pd.read_csv(file_path)
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# Combine multi-value columns
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def combine_columns(row, prefix):
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values = [str(row[col]) for col in df.columns if col.startswith(prefix) and pd.notna(row[col])]
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return ', '.join(values)
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df['uses'] = df.apply(lambda x: combine_columns(x, 'use'), axis=1)
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df['substitutes'] = df.apply(lambda x: combine_columns(x, 'substitute'), axis=1)
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df['side_effects'] = df.apply(lambda x: combine_columns(x, 'sideEffect'), axis=1)
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# Clean text
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text_columns = ['name', 'uses', 'Chemical Class', 'Therapeutic Class']
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for col in text_columns:
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df[col] = df[col].str.lower().str.replace('[^\w\s]', '', regex=True)
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return df[['id', 'name', 'uses', 'substitutes', 'side_effects',
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'Habit Forming', 'Therapeutic Class', 'Action Class']]
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# ----------------------
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# Embedding & FAISS Setup
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# ----------------------
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def setup_faiss(df):
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model = SentenceTransformer('all-MiniLM-L6-v2')
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embeddings = model.encode(df['uses'].tolist(), show_progress_bar=True)
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# Create FAISS index
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dimension = embeddings.shape[1]
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index = faiss.IndexFlatL2(dimension)
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index.add(embeddings)
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return model, index
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# ----------------------
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# Spelling Correction
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# ----------------------
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def setup_spell_checker():
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sym_spell = SymSpell(max_dictionary_edit_distance=2, prefix_length=7)
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sym_spell.load_dictionary('frequency_dictionary_en_82_765.txt',
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term_index=0, count_index=1)
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return sym_spell
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# ----------------------
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# Streamlit App
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# ----------------------
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def main():
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st.title("🧬 MedSearch NLP: Medicine Recommender System")
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# Load data and models
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df = preprocess_data('medicine_dataset.csv')
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model, faiss_index = setup_faiss(df)
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sym_spell = setup_spell_checker()
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# User input
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query = st.text_input("Describe your symptoms or medical need:")
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therapeutic_class = st.selectbox(
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"Filter by Therapeutic Class (optional):",
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['All'] + sorted(df['Therapeutic Class'].dropna().unique().tolist())
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)
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if query:
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# Spelling correction
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suggestions = sym_spell.lookup(query, Verbosity.CLOSEST, max_edit_distance=2)
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if suggestions:
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query = suggestions[0].term
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st.info(f"Did you mean: '{query}'?")
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# Semantic search
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query_embedding = model.encode([query])
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D, I = faiss_index.search(query_embedding, k=5)
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# Filter results
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results = df.iloc[I[0]].copy()
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if therapeutic_class != 'All':
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results = results[results['Therapeutic Class'] == therapeutic_class]
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# Display results
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st.subheader("Recommended Medicines")
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for _, row in results.iterrows():
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with st.expander(f"💊 {row['name']}"):
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cols = st.columns(3)
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cols[0].write(f"**Uses:** {row['uses']}")
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cols[1].write(f"**Substitutes:** {row['substitutes']}")
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cols[2].write(f"**Side Effects:** {row['side_effects']}")
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cols2 = st.columns(2)
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cols2[0].write(f"Therapeutic Class: {row['Therapeutic Class']}")
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cols2[1].write(f"Habit Forming: {row['Habit Forming']}")
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if __name__ == "__main__":
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main()
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