app.py
Browse files
app.py
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|
| 1 |
+
import gradio as gr
|
| 2 |
+
import pandas as pd
|
| 3 |
+
import numpy as np
|
| 4 |
+
import matplotlib.pyplot as plt
|
| 5 |
+
import seaborn as sns
|
| 6 |
+
from sklearn.model_selection import train_test_split
|
| 7 |
+
from sklearn.preprocessing import StandardScaler, OneHotEncoder, LabelEncoder
|
| 8 |
+
from sklearn.compose import ColumnTransformer
|
| 9 |
+
from sklearn.pipeline import Pipeline
|
| 10 |
+
from sklearn.impute import SimpleImputer
|
| 11 |
+
from sklearn.ensemble import RandomForestClassifier, RandomForestRegressor
|
| 12 |
+
from sklearn.linear_model import LogisticRegression, LinearRegression
|
| 13 |
+
from sklearn.metrics import accuracy_score, classification_report, mean_squared_error, r2_score
|
| 14 |
+
import xgboost as xgb
|
| 15 |
+
from catboost import CatBoostClassifier, CatBoostRegressor
|
| 16 |
+
import lightgbm as lgb
|
| 17 |
+
import io
|
| 18 |
+
import base64
|
| 19 |
+
from PIL import Image
|
| 20 |
+
import os
|
| 21 |
+
import pickle
|
| 22 |
+
import warnings
|
| 23 |
+
warnings.filterwarnings('ignore')
|
| 24 |
+
|
| 25 |
+
def infer_problem_type(df, target_col):
|
| 26 |
+
"""Determine if it's a classification or regression problem"""
|
| 27 |
+
unique_values = df[target_col].nunique()
|
| 28 |
+
# If the target column has less than 10 unique values and is an integer type,
|
| 29 |
+
# it's likely a classification problem
|
| 30 |
+
if unique_values < 10 or df[target_col].dtype in ['object', 'category', 'bool']:
|
| 31 |
+
return "Classification"
|
| 32 |
+
else:
|
| 33 |
+
return "Regression"
|
| 34 |
+
|
| 35 |
+
def generate_eda_report(df):
|
| 36 |
+
"""Generate EDA report for the dataset"""
|
| 37 |
+
buffer = io.BytesIO()
|
| 38 |
+
|
| 39 |
+
report = {}
|
| 40 |
+
|
| 41 |
+
# Basic info
|
| 42 |
+
report['shape'] = df.shape
|
| 43 |
+
report['dtypes'] = df.dtypes.astype(str).to_dict()
|
| 44 |
+
report['null_counts'] = df.isnull().sum().to_dict()
|
| 45 |
+
report['desc_stats'] = df.describe().to_html()
|
| 46 |
+
|
| 47 |
+
# Correlation heatmap
|
| 48 |
+
plt.figure(figsize=(10, 8))
|
| 49 |
+
numeric_df = df.select_dtypes(include=['number'])
|
| 50 |
+
if not numeric_df.empty:
|
| 51 |
+
sns.heatmap(numeric_df.corr(), annot=True, cmap='coolwarm', linewidths=0.5)
|
| 52 |
+
plt.title('Correlation Matrix')
|
| 53 |
+
plt.tight_layout()
|
| 54 |
+
plt.savefig(buffer, format='png')
|
| 55 |
+
plt.close()
|
| 56 |
+
buffer.seek(0)
|
| 57 |
+
report['corr_heatmap'] = base64.b64encode(buffer.getvalue()).decode('utf-8')
|
| 58 |
+
buffer.close()
|
| 59 |
+
|
| 60 |
+
# Summary of categorical columns
|
| 61 |
+
categorical_cols = df.select_dtypes(include=['object', 'category']).columns.tolist()
|
| 62 |
+
report['categorical_cols'] = categorical_cols
|
| 63 |
+
|
| 64 |
+
# Summary of numerical columns
|
| 65 |
+
numerical_cols = df.select_dtypes(include=['number']).columns.tolist()
|
| 66 |
+
report['numerical_cols'] = numerical_cols
|
| 67 |
+
|
| 68 |
+
return report
|
| 69 |
+
|
| 70 |
+
def clean_and_preprocess(df, problem_type, target_col):
|
| 71 |
+
"""Clean and preprocess the dataset"""
|
| 72 |
+
# Make a copy of the dataframe
|
| 73 |
+
processed_df = df.copy()
|
| 74 |
+
|
| 75 |
+
# Handle missing values
|
| 76 |
+
for col in processed_df.columns:
|
| 77 |
+
if processed_df[col].dtype in ['int64', 'float64']:
|
| 78 |
+
processed_df[col].fillna(processed_df[col].median(), inplace=True)
|
| 79 |
+
else:
|
| 80 |
+
processed_df[col].fillna(processed_df[col].mode()[0], inplace=True)
|
| 81 |
+
|
| 82 |
+
# Split features and target
|
| 83 |
+
X = processed_df.drop(columns=[target_col])
|
| 84 |
+
y = processed_df[target_col]
|
| 85 |
+
|
| 86 |
+
# Identify categorical and numerical columns
|
| 87 |
+
categorical_cols = X.select_dtypes(include=['object', 'category']).columns.tolist()
|
| 88 |
+
numerical_cols = X.select_dtypes(include=['number']).columns.tolist()
|
| 89 |
+
|
| 90 |
+
# Create preprocessor
|
| 91 |
+
preprocessor = ColumnTransformer(
|
| 92 |
+
transformers=[
|
| 93 |
+
('num', Pipeline(steps=[
|
| 94 |
+
('imputer', SimpleImputer(strategy='median')),
|
| 95 |
+
('scaler', StandardScaler())
|
| 96 |
+
]), numerical_cols),
|
| 97 |
+
('cat', Pipeline(steps=[
|
| 98 |
+
('imputer', SimpleImputer(strategy='most_frequent')),
|
| 99 |
+
('onehot', OneHotEncoder(handle_unknown='ignore'))
|
| 100 |
+
]), categorical_cols)
|
| 101 |
+
]
|
| 102 |
+
)
|
| 103 |
+
|
| 104 |
+
# Create and fit preprocessor
|
| 105 |
+
X_processed = preprocessor.fit_transform(X)
|
| 106 |
+
|
| 107 |
+
# Handle target for classification
|
| 108 |
+
if problem_type == "Classification":
|
| 109 |
+
le = LabelEncoder()
|
| 110 |
+
y = le.fit_transform(y)
|
| 111 |
+
|
| 112 |
+
# Split data
|
| 113 |
+
X_train, X_test, y_train, y_test = train_test_split(X_processed, y, test_size=0.2, random_state=42)
|
| 114 |
+
|
| 115 |
+
preprocessing_info = {
|
| 116 |
+
'preprocessor': preprocessor,
|
| 117 |
+
'X_train': X_train,
|
| 118 |
+
'X_test': X_test,
|
| 119 |
+
'y_train': y_train,
|
| 120 |
+
'y_test': y_test,
|
| 121 |
+
'categorical_cols': categorical_cols,
|
| 122 |
+
'numerical_cols': numerical_cols,
|
| 123 |
+
'target_encoder': le if problem_type == "Classification" else None
|
| 124 |
+
}
|
| 125 |
+
|
| 126 |
+
return preprocessing_info
|
| 127 |
+
|
| 128 |
+
def train_and_evaluate_models(preprocessing_info, problem_type):
|
| 129 |
+
"""Train and evaluate models based on problem type"""
|
| 130 |
+
X_train = preprocessing_info['X_train']
|
| 131 |
+
X_test = preprocessing_info['X_test']
|
| 132 |
+
y_train = preprocessing_info['y_train']
|
| 133 |
+
y_test = preprocessing_info['y_test']
|
| 134 |
+
|
| 135 |
+
results = {}
|
| 136 |
+
models = {}
|
| 137 |
+
|
| 138 |
+
if problem_type == "Classification":
|
| 139 |
+
# Classification models
|
| 140 |
+
models_to_train = {
|
| 141 |
+
'RandomForest': RandomForestClassifier(n_estimators=100, random_state=42),
|
| 142 |
+
'LogisticRegression': LogisticRegression(max_iter=1000, random_state=42),
|
| 143 |
+
'XGBoost': xgb.XGBClassifier(random_state=42),
|
| 144 |
+
'CatBoost': CatBoostClassifier(verbose=0, random_state=42),
|
| 145 |
+
'LightGBM': lgb.LGBMClassifier(random_state=42)
|
| 146 |
+
}
|
| 147 |
+
|
| 148 |
+
for name, model in models_to_train.items():
|
| 149 |
+
model.fit(X_train, y_train)
|
| 150 |
+
y_pred = model.predict(X_test)
|
| 151 |
+
|
| 152 |
+
accuracy = accuracy_score(y_test, y_pred)
|
| 153 |
+
report = classification_report(y_test, y_pred, output_dict=True)
|
| 154 |
+
|
| 155 |
+
results[name] = {
|
| 156 |
+
'accuracy': accuracy,
|
| 157 |
+
'report': report
|
| 158 |
+
}
|
| 159 |
+
models[name] = model
|
| 160 |
+
|
| 161 |
+
else:
|
| 162 |
+
# Regression models
|
| 163 |
+
models_to_train = {
|
| 164 |
+
'RandomForest': RandomForestRegressor(n_estimators=100, random_state=42),
|
| 165 |
+
'LinearRegression': LinearRegression(),
|
| 166 |
+
'XGBoost': xgb.XGBRegressor(random_state=42),
|
| 167 |
+
'CatBoost': CatBoostRegressor(verbose=0, random_state=42),
|
| 168 |
+
'LightGBM': lgb.LGBMRegressor(random_state=42)
|
| 169 |
+
}
|
| 170 |
+
|
| 171 |
+
for name, model in models_to_train.items():
|
| 172 |
+
model.fit(X_train, y_train)
|
| 173 |
+
y_pred = model.predict(X_test)
|
| 174 |
+
|
| 175 |
+
mse = mean_squared_error(y_test, y_pred)
|
| 176 |
+
r2 = r2_score(y_test, y_pred)
|
| 177 |
+
|
| 178 |
+
results[name] = {
|
| 179 |
+
'mse': mse,
|
| 180 |
+
'r2': r2
|
| 181 |
+
}
|
| 182 |
+
models[name] = model
|
| 183 |
+
|
| 184 |
+
# Find best model
|
| 185 |
+
if problem_type == "Classification":
|
| 186 |
+
best_model_name = max(results, key=lambda x: results[x]['accuracy'])
|
| 187 |
+
best_score = results[best_model_name]['accuracy']
|
| 188 |
+
metric_name = 'accuracy'
|
| 189 |
+
else:
|
| 190 |
+
best_model_name = max(results, key=lambda x: results[x]['r2'])
|
| 191 |
+
best_score = results[best_model_name]['r2']
|
| 192 |
+
metric_name = 'R²'
|
| 193 |
+
|
| 194 |
+
return {
|
| 195 |
+
'results': results,
|
| 196 |
+
'best_model_name': best_model_name,
|
| 197 |
+
'best_score': best_score,
|
| 198 |
+
'metric_name': metric_name,
|
| 199 |
+
'models': models,
|
| 200 |
+
'best_model': models[best_model_name]
|
| 201 |
+
}
|
| 202 |
+
|
| 203 |
+
def save_model(model, preprocessor, target_encoder=None):
|
| 204 |
+
"""Save model and preprocessor to files"""
|
| 205 |
+
os.makedirs('models', exist_ok=True)
|
| 206 |
+
|
| 207 |
+
# Save model
|
| 208 |
+
with open('models/model.pkl', 'wb') as f:
|
| 209 |
+
pickle.dump(model, f)
|
| 210 |
+
|
| 211 |
+
# Save preprocessor
|
| 212 |
+
with open('models/preprocessor.pkl', 'wb') as f:
|
| 213 |
+
pickle.dump(preprocessor, f)
|
| 214 |
+
|
| 215 |
+
# Save target encoder if it exists
|
| 216 |
+
if target_encoder is not None:
|
| 217 |
+
with open('models/target_encoder.pkl', 'wb') as f:
|
| 218 |
+
pickle.dump(target_encoder, f)
|
| 219 |
+
|
| 220 |
+
return 'models/model.pkl'
|
| 221 |
+
|
| 222 |
+
def process_dataset(df, target_col):
|
| 223 |
+
"""Process the entire dataset pipeline"""
|
| 224 |
+
# Determine problem type
|
| 225 |
+
problem_type = infer_problem_type(df, target_col)
|
| 226 |
+
|
| 227 |
+
# Generate EDA report
|
| 228 |
+
eda_report = generate_eda_report(df)
|
| 229 |
+
|
| 230 |
+
# Preprocess data
|
| 231 |
+
preprocessing_info = clean_and_preprocess(df, problem_type, target_col)
|
| 232 |
+
|
| 233 |
+
# Train and evaluate models
|
| 234 |
+
model_results = train_and_evaluate_models(preprocessing_info, problem_type)
|
| 235 |
+
|
| 236 |
+
# Save best model
|
| 237 |
+
model_path = save_model(
|
| 238 |
+
model_results['best_model'],
|
| 239 |
+
preprocessing_info['preprocessor'],
|
| 240 |
+
preprocessing_info.get('target_encoder')
|
| 241 |
+
)
|
| 242 |
+
|
| 243 |
+
return {
|
| 244 |
+
'problem_type': problem_type,
|
| 245 |
+
'eda_report': eda_report,
|
| 246 |
+
'preprocessing_info': preprocessing_info,
|
| 247 |
+
'model_results': model_results,
|
| 248 |
+
'model_path': model_path
|
| 249 |
+
}
|
| 250 |
+
|
| 251 |
+
def format_results_html(results_data):
|
| 252 |
+
"""Format results as HTML for display"""
|
| 253 |
+
problem_type = results_data['problem_type']
|
| 254 |
+
eda_report = results_data['eda_report']
|
| 255 |
+
model_results = results_data['model_results']
|
| 256 |
+
|
| 257 |
+
html = f"""
|
| 258 |
+
<h2>AutoML Analysis Results</h2>
|
| 259 |
+
<h3>Problem Type: {problem_type}</h3>
|
| 260 |
+
|
| 261 |
+
<h3>Dataset Information</h3>
|
| 262 |
+
<p><strong>Shape:</strong> {eda_report['shape'][0]} rows, {eda_report['shape'][1]} columns</p>
|
| 263 |
+
<p><strong>Numerical Columns:</strong> {', '.join(eda_report['numerical_cols'])}</p>
|
| 264 |
+
<p><strong>Categorical Columns:</strong> {', '.join(eda_report['categorical_cols'])}</p>
|
| 265 |
+
|
| 266 |
+
<h3>Missing Values</h3>
|
| 267 |
+
<ul>
|
| 268 |
+
"""
|
| 269 |
+
|
| 270 |
+
for col, count in eda_report['null_counts'].items():
|
| 271 |
+
if count > 0:
|
| 272 |
+
html += f"<li>{col}: {count} missing values</li>"
|
| 273 |
+
|
| 274 |
+
html += "</ul>"
|
| 275 |
+
|
| 276 |
+
if 'corr_heatmap' in eda_report:
|
| 277 |
+
html += f"""
|
| 278 |
+
<h3>Correlation Heatmap</h3>
|
| 279 |
+
<img src="data:image/png;base64,{eda_report['corr_heatmap']}" alt="Correlation Heatmap" width="600">
|
| 280 |
+
"""
|
| 281 |
+
|
| 282 |
+
html += f"""
|
| 283 |
+
<h3>Model Results</h3>
|
| 284 |
+
<p><strong>Best Model:</strong> {model_results['best_model_name']}</p>
|
| 285 |
+
<p><strong>Best {model_results['metric_name']}:</strong> {model_results['best_score']:.4f}</p>
|
| 286 |
+
|
| 287 |
+
<h4>All Models Performance</h4>
|
| 288 |
+
<table border="1" cellpadding="5">
|
| 289 |
+
<tr>
|
| 290 |
+
<th>Model</th>
|
| 291 |
+
"""
|
| 292 |
+
|
| 293 |
+
if problem_type == "Classification":
|
| 294 |
+
html += "<th>Accuracy</th></tr>"
|
| 295 |
+
|
| 296 |
+
for model, result in model_results['results'].items():
|
| 297 |
+
html += f"""
|
| 298 |
+
<tr>
|
| 299 |
+
<td>{model}</td>
|
| 300 |
+
<td>{result['accuracy']:.4f}</td>
|
| 301 |
+
</tr>
|
| 302 |
+
"""
|
| 303 |
+
else:
|
| 304 |
+
html += "<th>MSE</th><th>R²</th></tr>"
|
| 305 |
+
|
| 306 |
+
for model, result in model_results['results'].items():
|
| 307 |
+
html += f"""
|
| 308 |
+
<tr>
|
| 309 |
+
<td>{model}</td>
|
| 310 |
+
<td>{result['mse']:.4f}</td>
|
| 311 |
+
<td>{result['r2']:.4f}</td>
|
| 312 |
+
</tr>
|
| 313 |
+
"""
|
| 314 |
+
|
| 315 |
+
html += "</table>"
|
| 316 |
+
|
| 317 |
+
# Add detailed performance metrics for classification
|
| 318 |
+
if problem_type == "Classification":
|
| 319 |
+
best_model = model_results['best_model_name']
|
| 320 |
+
report = model_results['results'][best_model]['report']
|
| 321 |
+
|
| 322 |
+
html += f"""
|
| 323 |
+
<h4>Classification Report for {best_model}</h4>
|
| 324 |
+
<table border="1" cellpadding="5">
|
| 325 |
+
<tr>
|
| 326 |
+
<th>Class</th>
|
| 327 |
+
<th>Precision</th>
|
| 328 |
+
<th>Recall</th>
|
| 329 |
+
<th>F1-Score</th>
|
| 330 |
+
<th>Support</th>
|
| 331 |
+
</tr>
|
| 332 |
+
"""
|
| 333 |
+
|
| 334 |
+
for class_name, metrics in report.items():
|
| 335 |
+
if class_name in ['accuracy', 'macro avg', 'weighted avg']:
|
| 336 |
+
continue
|
| 337 |
+
|
| 338 |
+
html += f"""
|
| 339 |
+
<tr>
|
| 340 |
+
<td>{class_name}</td>
|
| 341 |
+
<td>{metrics['precision']:.4f}</td>
|
| 342 |
+
<td>{metrics['recall']:.4f}</td>
|
| 343 |
+
<td>{metrics['f1-score']:.4f}</td>
|
| 344 |
+
<td>{metrics['support']}</td>
|
| 345 |
+
</tr>
|
| 346 |
+
"""
|
| 347 |
+
|
| 348 |
+
html += "</table>"
|
| 349 |
+
|
| 350 |
+
html += f"""
|
| 351 |
+
<h3>Model Download</h3>
|
| 352 |
+
<p>Your model has been saved and is ready for download.</p>
|
| 353 |
+
"""
|
| 354 |
+
|
| 355 |
+
return html
|
| 356 |
+
|
| 357 |
+
def process_file(file, target_col):
|
| 358 |
+
"""Process uploaded CSV file"""
|
| 359 |
+
if file is None:
|
| 360 |
+
return "Please upload a CSV file."
|
| 361 |
+
|
| 362 |
+
# Read the CSV file
|
| 363 |
+
try:
|
| 364 |
+
df = pd.read_csv(file.name)
|
| 365 |
+
except Exception as e:
|
| 366 |
+
return f"Error reading the CSV file: {str(e)}"
|
| 367 |
+
|
| 368 |
+
# Validate target column
|
| 369 |
+
if target_col not in df.columns:
|
| 370 |
+
return f"Target column '{target_col}' not found in the dataset. Available columns: {', '.join(df.columns)}"
|
| 371 |
+
|
| 372 |
+
# Process the dataset
|
| 373 |
+
try:
|
| 374 |
+
results = process_dataset(df, target_col)
|
| 375 |
+
return format_results_html(results)
|
| 376 |
+
except Exception as e:
|
| 377 |
+
return f"Error processing the dataset: {str(e)}"
|
| 378 |
+
|
| 379 |
+
# Define Gradio interface
|
| 380 |
+
with gr.Blocks(title="AutoML for Structured Data") as demo:
|
| 381 |
+
gr.Markdown("# AutoML for Structured Data")
|
| 382 |
+
gr.Markdown("""
|
| 383 |
+
Upload a CSV file, specify the target column, and let AutoML do the rest! This app will:
|
| 384 |
+
1. Perform exploratory data analysis (EDA)
|
| 385 |
+
2. Determine if it's a regression or classification problem
|
| 386 |
+
3. Handle preprocessing (cleaning, encoding, etc.)
|
| 387 |
+
4. Train multiple models and select the best one
|
| 388 |
+
5. Display the results and allow you to download the model
|
| 389 |
+
""")
|
| 390 |
+
|
| 391 |
+
with gr.Row():
|
| 392 |
+
with gr.Column():
|
| 393 |
+
file_input = gr.File(label="Upload CSV File")
|
| 394 |
+
target_col = gr.Textbox(label="Target Column Name")
|
| 395 |
+
submit_btn = gr.Button("Process Dataset")
|
| 396 |
+
|
| 397 |
+
with gr.Column():
|
| 398 |
+
output = gr.HTML(label="Results")
|
| 399 |
+
|
| 400 |
+
submit_btn.click(fn=process_file, inputs=[file_input, target_col], outputs=output)
|
| 401 |
+
|
| 402 |
+
# Launch the app
|
| 403 |
+
demo.launch()
|