""" Export all arXiv IDs from Turso DB to arxiv_ids.txt. Uses the same Turso HTTP pipeline API as turso_svc.py. Paginates with LIMIT/OFFSET to handle 1.6M rows. Usage: set TURSO_URL=libsql://... set TURSO_DB_TOKEN=... python scripts/export_arxiv_ids.py """ import os import sys import time import httpx BATCH_SIZE = 50_000 # rows per query (Turso handles this fine) OUTPUT_FILE = os.path.join(os.path.dirname(__file__), "..", "arxiv_ids.txt") def get_turso_config(): url = os.getenv("TURSO_URL", "") token = os.getenv("TURSO_DB_TOKEN", "") if not url or not token: print("ERROR: Set TURSO_URL and TURSO_DB_TOKEN environment variables.") print(" Example:") print(" set TURSO_URL=libsql://your-db.turso.io") print(" set TURSO_DB_TOKEN=your-token") sys.exit(1) # Convert to HTTPS if url.startswith("libsql://"): url = "https://" + url[len("libsql://"):] elif not url.startswith("https://"): url = "https://" + url return url.rstrip("/"), token def turso_query(url: str, token: str, sql: str, args: list = None) -> list[list]: """Execute a query via Turso HTTP pipeline API. Returns list of rows.""" stmt = {"sql": sql} if args: stmt["args"] = args payload = { "requests": [ {"type": "execute", "stmt": stmt}, {"type": "close"}, ] } headers = { "Authorization": f"Bearer {token}", "Content-Type": "application/json", } resp = httpx.post( f"{url}/v2/pipeline", json=payload, headers=headers, timeout=30, ) resp.raise_for_status() data = resp.json() # Parse response result = data.get("results", []) if not result: return [] execute_result = result[0] if execute_result.get("type") == "error": raise RuntimeError(f"Turso error: {execute_result.get('error')}") response = execute_result.get("response", {}) result_data = response.get("result", {}) rows = result_data.get("rows", []) # Each row is a list of {"type": "text", "value": "..."} dicts return [[col.get("value") for col in row] for row in rows] def main(): url, token = get_turso_config() # First, get total count print("[export] Counting papers in Turso...") count_rows = turso_query(url, token, "SELECT COUNT(*) FROM papers") total = int(count_rows[0][0]) if count_rows else 0 print(f"[export] Found {total:,} papers") if total == 0: print("ERROR: No papers found. Check your Turso connection.") sys.exit(1) # Paginate and collect all IDs all_ids = [] offset = 0 t0 = time.perf_counter() while offset < total: batch_start = time.perf_counter() rows = turso_query( url, token, f"SELECT arxiv_id FROM papers LIMIT {BATCH_SIZE} OFFSET {offset}" ) batch_ms = (time.perf_counter() - batch_start) * 1000 batch_ids = [row[0] for row in rows if row[0]] all_ids.extend(batch_ids) offset += BATCH_SIZE pct = min(100, offset * 100 / total) print(f"[export] {len(all_ids):>10,} / {total:,} ({pct:.0f}%) " f"batch: {len(batch_ids):,} in {batch_ms:.0f}ms") if len(rows) < BATCH_SIZE: break # No more rows elapsed = time.perf_counter() - t0 print(f"\n[export] Collected {len(all_ids):,} arXiv IDs in {elapsed:.1f}s") # Write to file output_path = os.path.abspath(OUTPUT_FILE) with open(output_path, "w", encoding="utf-8") as f: for aid in all_ids: f.write(aid + "\n") file_size_mb = os.path.getsize(output_path) / (1024 * 1024) print(f"[export] Written to: {output_path}") print(f"[export] File size: {file_size_mb:.1f} MB") print(f"[export] Lines: {len(all_ids):,}") print(f"\n✅ Done! Feed this file to the ML Intern's Script 1:") print(f" python 01_fetch_citation_edges.py --corpus-file arxiv_ids.txt") if __name__ == "__main__": main()