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818f706
1
Parent(s):
ead96cc
Update app.py
Browse files
app.py
CHANGED
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@@ -1,5 +1,6 @@
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import gradio as gr
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def get_pdb(pdb_code="", filepath=""):
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if pdb_code is None or pdb_code == "":
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try:
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@@ -10,6 +11,7 @@ def get_pdb(pdb_code="", filepath=""):
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os.system(f"wget -qnc https://files.rcsb.org/view/{pdb_code}.pdb")
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return f"{pdb_code}.pdb"
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def read_mol(molpath):
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with open(molpath, "r") as fp:
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lines = fp.readlines()
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@@ -17,7 +19,7 @@ def read_mol(molpath):
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for l in lines:
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mol += l
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return mol
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-
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def molecule(input_pdb):
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@@ -71,19 +73,22 @@ def molecule(input_pdb):
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allow-scripts allow-same-origin allow-popups
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allow-top-navigation-by-user-activation allow-downloads" allowfullscreen=""
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allowpaymentrequest="" frameborder="0" srcdoc='{x}'></iframe>"""
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-
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-
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pdb_path = get_pdb(inp, file)
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return molecule(pdb_path)
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-
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gr.Markdown("#PDB viewer using 3Dmol.js")
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inp = gr.Textbox(
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file = gr.File(file_count="single")
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btn = gr.Button("View structure")
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mol = gr.HTML()
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btn.click(fn=update,inputs=[inp, file],outputs=mol
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-
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demo.launch()
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import gradio as gr
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+
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def get_pdb(pdb_code="", filepath=""):
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if pdb_code is None or pdb_code == "":
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try:
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os.system(f"wget -qnc https://files.rcsb.org/view/{pdb_code}.pdb")
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return f"{pdb_code}.pdb"
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+
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def read_mol(molpath):
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with open(molpath, "r") as fp:
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lines = fp.readlines()
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for l in lines:
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mol += l
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return mol
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+
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def molecule(input_pdb):
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allow-scripts allow-same-origin allow-popups
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allow-top-navigation-by-user-activation allow-downloads" allowfullscreen=""
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allowpaymentrequest="" frameborder="0" srcdoc='{x}'></iframe>"""
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+
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+
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def update(inp, file):
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pdb_path = get_pdb(inp, file)
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return molecule(pdb_path)
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+
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+
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demo = gr.Blocks()
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with demo:
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gr.Markdown("#PDB viewer using 3Dmol.js")
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inp = gr.Textbox(
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placeholder="PDB Code or upload file below", label="Input structure"
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)
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file = gr.File(file_count="single")
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btn = gr.Button("View structure")
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mol = gr.HTML()
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btn.click(fn=update, inputs=[inp, file], outputs=mol)
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demo.launch()
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