Update app.py

app.py

@@ -8,7 +8,7 @@ from gradio_moleculeview import moleculeview
 
 import cellscape
 
-def predict(input_mol, view_str, chains):
+def predict(input_mol, style, view_str, chains):
     # write view to file
     with open("view_matrix", "w") as f:
         f.write(json.loads(view_str))
@@ -19,8 +19,12 @@ def predict(input_mol, view_str, chains):
     # sort keys in dict and add colors to chain_str
     for chain in sorted(chain_dict.keys()):
         chain_str += f" '{chain_dict[chain]}'"
-    os.system(f"cellscape cartoon --pdb {input_mol.name} --outline chain --colors {chain_str}  --depth flat --back_outline --view view_matrix --save outline_all.svg")
-
+    if style == "Goodsell3D":
+        os.system(f"cellscape cartoon --pdb {input_mol.name} --outline residue --depth_shading --depth_lines --colors {chain_str}  --depth flat --back_outline --view view_matrix --save outline_all.svg")
+    elif style == "Cartoon":
+        os.system(f"cellscape cartoon --pdb {input_mol.name} --outline residue  --depth_contour_interval 10 --colors {chain_str}  --depth contours --back_outline --view view_matrix --save outline_all.svg")
+    else:
+        os.system(f"cellscape cartoon --pdb {input_mol.name} --outline chain --colors {chain_str}  --depth flat --back_outline --view view_matrix --save outline_all.svg")
     #read content of file
     with open("outline_all.svg", "r") as f:
         return f.read(), "outline_all.svg"
@@ -31,6 +35,7 @@ def predict(input_mol, view_str, chains):
 
 with gr.Blocks() as demo:
     gr.Markdown("# PDB2Vector")
+    style = gr.Radio(values=["Flat", "Contour", "Goodsell3D"], label="Style")
     inp = moleculeview(label="Molecule3D")
 
     view_str = gr.Textbox("viewMatrixResult", label="View Matrix", visible=False)
@@ -42,8 +47,8 @@ with gr.Blocks() as demo:
     out_file = gr.File(label="Download SVG")
     btn.click(None, [], [view_str, chains], js="() => [document.getElementById('viewMatrixResult').value, document.getElementById('chains').value]")  #
     # on change of chains trigger, rendering
-    view_str.change(predict, [inp, view_str, chains], [html, out_file])
-    chains.change(predict, [inp, view_str, chains], [html, out_file])
+    view_str.change(predict, [inp, style, view_str, chains], [html, out_file])
+    chains.change(predict, [inp, style, view_str, chains], [html, out_file])
     
 
 if __name__ == "__main__":