""" Batch tab — parallel get calls for up to 10 IDs. """ import gradio as gr from core import config, runner from core.formatter import format_result BATCH_ENTITIES = [ "gene", "variant", "article", "trial", "drug", "disease", "pathway", "protein", "adverse-event", "pgx", ] def create_batch_tab(session_keys): """Build the Batch tab.""" with gr.Tab("📦 Batch"): gr.Markdown( "## Batch Mode\n" "Run parallel `get` calls for up to 10 entity IDs in one command.\n" "Enter comma-separated IDs." ) with gr.Row(): entity = gr.Dropdown( choices=BATCH_ENTITIES, value="gene", label="Entity Type", scale=1, ) ids = gr.Textbox( label="IDs (comma-separated, max 10)", placeholder="e.g., BRAF,TP53 or NCT02576665,NCT03715933", scale=3, ) with gr.Row(): sections = gr.Textbox( label="Sections (comma-separated, optional)", placeholder="e.g., pathways,interactions", ) source = gr.Textbox( label="Source (optional)", placeholder="e.g., nci", ) with gr.Row(): no_cache = gr.Checkbox(label="Bypass cache", value=False) # Quick examples gr.Markdown("**Quick examples:**") with gr.Row(): ex1 = gr.Button("Genes: BRAF,TP53", size="sm", variant="secondary") ex2 = gr.Button("Trials: NCT02576665,NCT03715933", size="sm", variant="secondary") ex3 = gr.Button("Variants: BRAF V600E, KRAS G12D", size="sm", variant="secondary") ex1.click(fn=lambda: ("gene", "BRAF,TP53"), outputs=[entity, ids]) ex2.click(fn=lambda: ("trial", "NCT02576665,NCT03715933"), outputs=[entity, ids]) ex3.click(fn=lambda: ("variant", "BRAF V600E,KRAS G12D"), outputs=[entity, ids]) run_btn = gr.Button("📦 Run Batch", variant="primary") output_md = gr.Markdown(label="Results") with gr.Accordion("Raw JSON", open=False): output_json = gr.Code(language="json") def run_batch(ent, id_str, secs, src, skip_cache, keys): if not id_str.strip(): raise gr.Error("Please enter at least one ID (comma-separated, max 10).") args = ["batch", ent, id_str.strip()] if secs.strip(): args.extend(["--sections", secs.strip()]) if src.strip(): args.extend(["--source", src.strip()]) env = config.build_env_overrides(keys) result = runner.run(args, json_mode=True, no_cache=skip_cache, env_overrides=env) if not result["success"]: raise gr.Error(f"BioMCP error: {result['error']}") md, js = format_result(result) return md, js run_btn.click( fn=run_batch, inputs=[entity, ids, sections, source, no_cache, session_keys], outputs=[output_md, output_json], )