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import gradio as gr
import pandas as pd
import numpy as np
import torch
from transformers import BertTokenizer, BertForSequenceClassification, TrainingArguments, Trainer
from peft import LoraConfig, AdaLoraConfig, get_peft_model, TaskType
from datasets import Dataset
from sklearn.metrics import accuracy_score, precision_recall_fscore_support, confusion_matrix
from torch import nn
from torch.utils.data import DataLoader, WeightedRandomSampler
import os
from datetime import datetime
import gc
import json
from functools import lru_cache
from typing import Dict, List, Tuple, Optional
import warnings
warnings.filterwarnings('ignore')
# 環境設置
os.environ["TOKENIZERS_PARALLELISM"] = "false"
os.environ["PYTORCH_CUDA_ALLOC_CONF"] = "max_split_size_mb:512"
# 優化 CUDA 設置
torch.backends.cudnn.benchmark = False
if torch.cuda.is_available():
torch.cuda.empty_cache()
# ==================== 全域變數 ====================
trained_models = {}
model_counter = 0
training_histories = {} # 新增:儲存訓練歷史
# ==================== 訓練監控類 ====================
class TrainingMonitor:
"""訓練過程監控器"""
def __init__(self):
self.history = {
'epoch': [],
'train_loss': [],
'eval_loss': [],
'eval_accuracy': [],
'eval_f1': [],
'eval_precision': [],
'eval_recall': [],
'learning_rate': [],
'best_epoch': None,
'best_metric_value': None
}
def log_epoch(self, epoch: int, train_loss: float, eval_metrics: Dict, lr: float):
"""記錄每個 epoch 的結果"""
self.history['epoch'].append(epoch)
self.history['train_loss'].append(train_loss)
self.history['eval_loss'].append(eval_metrics.get('eval_loss', 0))
self.history['eval_accuracy'].append(eval_metrics.get('eval_accuracy', 0))
self.history['eval_f1'].append(eval_metrics.get('eval_f1', 0))
self.history['eval_precision'].append(eval_metrics.get('eval_precision', 0))
self.history['eval_recall'].append(eval_metrics.get('eval_recall', 0))
self.history['learning_rate'].append(lr)
def update_best(self, epoch: int, metric_value: float):
"""更新最佳結果"""
self.history['best_epoch'] = epoch
self.history['best_metric_value'] = metric_value
def get_summary(self) -> str:
"""獲取訓練摘要"""
if not self.history['epoch']:
return "尚無訓練記錄"
summary = "📈 訓練歷程摘要\n"
summary += f"總訓練輪數: {len(self.history['epoch'])}\n"
summary += f"最佳 Epoch: {self.history['best_epoch']}\n"
summary += f"最佳指標值: {self.history['best_metric_value']:.4f}\n\n"
summary += "各 Epoch 表現:\n"
for i, epoch in enumerate(self.history['epoch']):
summary += f"Epoch {epoch}: Loss={self.history['train_loss'][i]:.4f}, "
summary += f"F1={self.history['eval_f1'][i]:.4f}, "
summary += f"Acc={self.history['eval_accuracy'][i]:.4f}\n"
return summary
# ==================== 權重計算改進 ====================
def calculate_class_weights(n0: int, n1: int, weight_mult: float = 1.0,
method: str = 'sqrt') -> Tuple[float, float]:
"""
改進的類別權重計算
Args:
n0: 負類樣本數(存活)
n1: 正類樣本數(死亡)
weight_mult: 權重倍數調整
method: 計算方法 ('balanced', 'sqrt', 'log', 'custom')
Returns:
(w0, w1): 類別權重
"""
if n1 == 0:
return 1.0, 1.0
ratio = n0 / n1
total = n0 + n1
if method == 'balanced':
# sklearn 風格的平衡權重
w0 = total / (2 * n0) if n0 > 0 else 1.0
w1 = total / (2 * n1) if n1 > 0 else 1.0
w1 *= weight_mult
elif method == 'sqrt':
# 使用平方根緩和極端權重(推薦用於極度不平衡)
w0 = 1.0
w1 = min(np.sqrt(ratio) * weight_mult, 10.0) # 設置上限為 10
elif method == 'log':
# 使用對數進一步緩和
w0 = 1.0
w1 = min(np.log1p(ratio) * weight_mult, 8.0) # 設置上限為 8
elif method == 'custom':
# 自定義邏輯,根據不平衡程度調整
if ratio > 20: # 極度不平衡
w0 = 1.0
w1 = min(5.0 * weight_mult, 10.0)
elif ratio > 10: # 高度不平衡
w0 = 1.0
w1 = min(ratio * 0.3 * weight_mult, 8.0)
elif ratio > 5: # 中度不平衡
w0 = 1.0
w1 = min(ratio * 0.5 * weight_mult, 6.0)
else: # 輕度不平衡
w0 = 1.0
w1 = ratio * weight_mult
else:
# 預設使用 sqrt 方法
w0 = 1.0
w1 = min(np.sqrt(ratio) * weight_mult, 10.0)
return w0, w1
# ==================== 評估指標計算 ====================
def compute_metrics(pred):
"""計算完整的評估指標"""
try:
labels = pred.label_ids
preds = pred.predictions.argmax(-1)
# 基本指標
precision, recall, f1, _ = precision_recall_fscore_support(
labels, preds, average='binary', pos_label=1, zero_division=0
)
acc = accuracy_score(labels, preds)
# 混淆矩陣
cm = confusion_matrix(labels, preds)
tn = fp = fn = tp = 0
if cm.shape == (2, 2):
tn, fp, fn, tp = cm.ravel()
# 敏感度和特異度
sensitivity = tp / (tp + fn) if (tp + fn) > 0 else 0
specificity = tn / (tn + fp) if (tn + fp) > 0 else 0
# 額外指標
ppv = tp / (tp + fp) if (tp + fp) > 0 else 0 # 陽性預測值
npv = tn / (tn + fn) if (tn + fn) > 0 else 0 # 陰性預測值
return {
'accuracy': acc,
'f1': f1,
'precision': precision,
'recall': recall,
'sensitivity': sensitivity,
'specificity': specificity,
'ppv': ppv,
'npv': npv,
'tp': int(tp),
'tn': int(tn),
'fp': int(fp),
'fn': int(fn)
}
except Exception as e:
print(f"Error in compute_metrics: {e}")
return {k: 0 for k in ['accuracy', 'f1', 'precision', 'recall',
'sensitivity', 'specificity', 'ppv', 'npv',
'tp', 'tn', 'fp', 'fn']}
# ==================== 基準模型評估(修正版,只保留一個) ====================
def evaluate_baseline(model, tokenizer, test_dataset, device, batch_size=16):
"""評估未微調的基準模型"""
model.eval()
all_preds = []
all_labels = []
def collate_fn(batch):
return {
'input_ids': torch.stack([torch.tensor(item['input_ids']) for item in batch]),
'attention_mask': torch.stack([torch.tensor(item['attention_mask']) for item in batch]),
'labels': torch.tensor([item['label'] for item in batch])
}
dataloader = DataLoader(
test_dataset,
batch_size=batch_size,
collate_fn=collate_fn,
pin_memory=torch.cuda.is_available(),
num_workers=0 # 避免多進程問題
)
with torch.no_grad():
for batch in dataloader:
labels = batch.pop('labels')
inputs = {k: v.to(device) for k, v in batch.items()}
outputs = model(**inputs)
preds = torch.argmax(outputs.logits, dim=-1)
all_preds.extend(preds.cpu().numpy())
all_labels.extend(labels.numpy())
# 計算所有指標
precision, recall, f1, _ = precision_recall_fscore_support(
all_labels, all_preds, average='binary', pos_label=1, zero_division=0
)
acc = accuracy_score(all_labels, all_preds)
cm = confusion_matrix(all_labels, all_preds)
tn = fp = fn = tp = 0
if cm.shape == (2, 2):
tn, fp, fn, tp = cm.ravel()
sensitivity = tp / (tp + fn) if (tp + fn) > 0 else 0
specificity = tn / (tn + fp) if (tn + fp) > 0 else 0
ppv = tp / (tp + fp) if (tp + fp) > 0 else 0
npv = tn / (tn + fn) if (tn + fn) > 0 else 0
return {
'accuracy': acc,
'f1': f1,
'precision': precision,
'recall': recall,
'sensitivity': sensitivity,
'specificity': specificity,
'ppv': ppv,
'npv': npv,
'tp': int(tp),
'tn': int(tn),
'fp': int(fp),
'fn': int(fn)
}
# ==================== 自定義 Trainer 與 Early Stopping ====================
class CustomTrainer(Trainer):
"""支援類別權重、Focal Loss 和 Early Stopping 的 Trainer"""
def __init__(self, *args, class_weights=None, use_focal_loss=False,
focal_gamma=2.0, monitor=None, early_stopping_patience=3,
early_stopping_metric='eval_f1', **kwargs):
super().__init__(*args, **kwargs)
self.class_weights = class_weights
self.use_focal_loss = use_focal_loss
self.focal_gamma = focal_gamma
self.monitor = monitor
self.early_stopping_patience = early_stopping_patience
self.early_stopping_metric = early_stopping_metric
self.best_metric = -float('inf')
self.best_model_state = None
self.patience_counter = 0
self.current_epoch = 0
def compute_loss(self, model, inputs, return_outputs=False, num_items_in_batch=None):
"""計算損失函數"""
labels = inputs.pop("labels")
outputs = model(**inputs)
logits = outputs.logits
if self.use_focal_loss and self.class_weights is not None:
# Focal Loss 實現
ce_loss = nn.CrossEntropyLoss(weight=self.class_weights, reduction='none')(
logits.view(-1, 2), labels.view(-1)
)
pt = torch.exp(-ce_loss)
focal_loss = ((1 - pt) ** self.focal_gamma * ce_loss).mean()
loss = focal_loss
elif self.class_weights is not None:
# 標準加權交叉熵
loss_fct = nn.CrossEntropyLoss(weight=self.class_weights)
loss = loss_fct(logits.view(-1, 2), labels.view(-1))
else:
# 標準交叉熵
loss_fct = nn.CrossEntropyLoss()
loss = loss_fct(logits.view(-1, 2), labels.view(-1))
return (loss, outputs) if return_outputs else loss
def on_epoch_end(self, args, state, control, **kwargs):
"""每個 epoch 結束時的回調"""
self.current_epoch += 1
# 評估模型
metrics = self.evaluate()
# 記錄到監控器
if self.monitor:
self.monitor.log_epoch(
epoch=self.current_epoch,
train_loss=state.log_history[-1].get('loss', 0) if state.log_history else 0,
eval_metrics=metrics,
lr=self.get_learning_rate()
)
# Early Stopping 檢查
current_metric = metrics.get(self.early_stopping_metric, 0)
if current_metric > self.best_metric:
self.best_metric = current_metric
self.best_model_state = {k: v.cpu().clone() for k, v in self.model.state_dict().items()}
self.patience_counter = 0
if self.monitor:
self.monitor.update_best(self.current_epoch, current_metric)
print(f"✅ Epoch {self.current_epoch}: 新最佳 {self.early_stopping_metric} = {current_metric:.4f}")
else:
self.patience_counter += 1
print(f"⏳ Epoch {self.current_epoch}: 無改善 (patience: {self.patience_counter}/{self.early_stopping_patience})")
if self.patience_counter >= self.early_stopping_patience:
print(f"🛑 Early Stopping 於 Epoch {self.current_epoch}")
control.should_training_stop = True
return control
def get_learning_rate(self):
"""獲取當前學習率"""
if self.optimizer is None:
return 0
return self.optimizer.param_groups[0]['lr']
def load_best_model(self):
"""載入最佳模型"""
if self.best_model_state:
self.model.load_state_dict(self.best_model_state)
print(f"✅ 已載入最佳模型 (最佳 {self.early_stopping_metric} = {self.best_metric:.4f})")
# ==================== 基準模型快取(改進版) ====================
@lru_cache(maxsize=3)
def get_cached_baseline_model(model_name: str, num_labels: int = 2):
"""使用 LRU 快取管理基準模型"""
device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
model = BertForSequenceClassification.from_pretrained(model_name, num_labels=num_labels)
return model.to(device)
# ==================== 改善率計算 ====================
def calculate_improvement(baseline_val: float, finetuned_val: float) -> float:
"""安全計算改善率"""
if baseline_val == 0:
return float('inf') if finetuned_val > 0 else 0.0
return (finetuned_val - baseline_val) / baseline_val * 100
def format_improvement(val: float) -> str:
"""格式化改善率顯示"""
if val == float('inf'):
return "N/A (baseline=0)"
elif val > 0:
return f"↑ {val:.1f}%"
elif val < 0:
return f"↓ {abs(val):.1f}%"
else:
return "→ 0.0%"
# ==================== 主要訓練函數(改進版) ====================
def train_bert_model(csv_file, base_model, method, num_epochs, batch_size, learning_rate,
weight_decay, dropout, lora_r, lora_alpha, lora_dropout,
weight_mult, weight_method, best_metric, use_early_stopping, patience):
"""
改進的 BERT 模型訓練函數
"""
global trained_models, model_counter, training_histories
model_mapping = {
"BERT-base": "bert-base-uncased",
"BERT-base-chinese": "bert-base-chinese",
"BioBERT": "dmis-lab/biobert-base-cased-v1.2",
"SciBERT": "allenai/scibert_scivocab_uncased"
}
model_name = model_mapping.get(base_model, "bert-base-uncased")
try:
# ========== 資料驗證與載入 ==========
if csv_file is None:
return "❌ 請上傳 CSV 檔案", "", "", "", ""
df = pd.read_csv(csv_file.name)
if 'Text' not in df.columns or 'label' not in df.columns:
return "❌ CSV 必須包含 'Text' 和 'label' 欄位", "", "", "", ""
# 資料清理
df_clean = pd.DataFrame({
'text': df['Text'].astype(str),
'label': df['label'].astype(int)
}).dropna()
# 統計資料
n0 = int(sum(df_clean['label'] == 0))
n1 = int(sum(df_clean['label'] == 1))
if n1 == 0:
return "❌ 資料集中沒有正類樣本(死亡)", "", "", "", ""
ratio = n0 / n1 if n1 > 0 else 0
# ========== 計算類別權重 ==========
w0, w1 = calculate_class_weights(n0, n1, weight_mult, method=weight_method)
# ========== 準備資料資訊 ==========
info = f"📊 資料集統計\n"
info += f"{'='*50}\n"
info += f"總樣本數: {len(df_clean):,}\n"
info += f"存活 (0): {n0:,} ({n0/len(df_clean)*100:.1f}%)\n"
info += f"死亡 (1): {n1:,} ({n1/len(df_clean)*100:.1f}%)\n"
info += f"不平衡比例: {ratio:.2f}:1\n"
info += f"\n⚖️ 類別權重設定\n"
info += f"{'='*50}\n"
info += f"計算方法: {weight_method}\n"
info += f"存活權重: {w0:.3f}\n"
info += f"死亡權重: {w1:.3f}\n"
info += f"權重比例: 1:{w1/w0:.2f}\n"
# ========== 模型與分詞器初始化 ==========
info += f"\n🤖 模型配置\n"
info += f"{'='*50}\n"
info += f"基礎模型: {base_model}\n"
info += f"模型路徑: {model_name}\n"
info += f"微調方法: {method.upper()}\n"
tokenizer = BertTokenizer.from_pretrained(model_name)
# ========== 資料集準備 ==========
dataset = Dataset.from_pandas(df_clean[['text', 'label']])
def preprocess(examples):
return tokenizer(
examples['text'],
truncation=True,
padding='max_length',
max_length=128
)
tokenized = dataset.map(preprocess, batched=True, remove_columns=['text'])
split = tokenized.train_test_split(test_size=0.2, seed=42, stratify=tokenized['label'])
# ========== 設備配置 ==========
device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
info += f"運算設備: {'GPU ✅ (' + torch.cuda.get_device_name(0) + ')' if torch.cuda.is_available() else 'CPU ⚠️'}\n"
# ========== 評估基準模型 ==========
info += f"\n📏 基準模型評估\n"
info += f"{'='*50}\n"
info += f"正在評估未微調的 {base_model}...\n"
baseline_model = BertForSequenceClassification.from_pretrained(model_name, num_labels=2)
baseline_model = baseline_model.to(device)
baseline_perf = evaluate_baseline(
baseline_model, tokenizer, split['test'], device, batch_size=batch_size*2
)
info += f"基準 F1 分數: {baseline_perf['f1']:.4f}\n"
info += f"基準準確率: {baseline_perf['accuracy']:.4f}\n"
# 清理基準模型記憶體
del baseline_model
if torch.cuda.is_available():
torch.cuda.empty_cache()
gc.collect()
# ========== 配置微調模型 ==========
info += f"\n🔧 微調配置\n"
info += f"{'='*50}\n"
model = BertForSequenceClassification.from_pretrained(
model_name,
num_labels=2,
hidden_dropout_prob=dropout,
attention_probs_dropout_prob=dropout
)
# 應用 PEFT 方法
peft_applied = False
if method == "lora":
from peft import LoraConfig, get_peft_model, TaskType
config = LoraConfig(
task_type=TaskType.SEQ_CLS,
r=int(lora_r),
lora_alpha=int(lora_alpha),
lora_dropout=lora_dropout,
target_modules=["query", "value"],
bias="none"
)
model = get_peft_model(model, config)
peft_applied = True
info += f"✅ LoRA 已套用\n"
info += f" - Rank (r): {int(lora_r)}\n"
info += f" - Alpha: {int(lora_alpha)}\n"
info += f" - Dropout: {lora_dropout}\n"
elif method == "adalora":
from peft import AdaLoraConfig, get_peft_model, TaskType
config = AdaLoraConfig(
task_type=TaskType.SEQ_CLS,
r=int(lora_r),
lora_alpha=int(lora_alpha),
lora_dropout=lora_dropout,
target_modules=["query", "value"],
init_r=12,
target_r=int(lora_r),
tinit=200,
tfinal=1000,
deltaT=10
)
model = get_peft_model(model, config)
peft_applied = True
info += f"✅ AdaLoRA 已套用\n"
info += f" - Initial Rank: 12\n"
info += f" - Target Rank: {int(lora_r)}\n"
info += f" - Alpha: {int(lora_alpha)}\n"
elif method == "full":
info += f"✅ Full Fine-tuning 模式\n"
peft_applied = False
model = model.to(device)
# 參數統計
total_params = sum(p.numel() for p in model.parameters())
trainable_params = sum(p.numel() for p in model.parameters() if p.requires_grad)
info += f"\n💾 模型參數\n"
info += f"{'='*50}\n"
info += f"總參數量: {total_params:,}\n"
info += f"可訓練參數: {trainable_params:,}\n"
info += f"可訓練比例: {trainable_params/total_params*100:.2f}%\n"
info += f"記憶體節省: {(1 - trainable_params/total_params)*100:.1f}%\n"
# ========== 準備訓練 ==========
weights = torch.tensor([w0, w1], dtype=torch.float).to(device)
use_focal = ratio > 10 # 極度不平衡時使用 Focal Loss
if use_focal:
info += f"\n⚡ 特殊設定\n"
info += f"{'='*50}\n"
info += f"使用 Focal Loss (γ=2.0) 處理極度不平衡\n"
# 訓練參數
training_args = TrainingArguments(
output_dir='./results',
num_train_epochs=int(num_epochs),
per_device_train_batch_size=int(batch_size),
per_device_eval_batch_size=int(batch_size) * 2,
learning_rate=float(learning_rate),
weight_decay=float(weight_decay),
evaluation_strategy="epoch",
save_strategy="no", # 使用自定義保存策略
load_best_model_at_end=False,
report_to="none",
logging_steps=max(1, len(split['train']) // (int(batch_size) * 10)),
warmup_steps=min(500, len(split['train']) // int(batch_size)),
logging_first_step=True,
remove_unused_columns=False,
label_smoothing_factor=0.1 if ratio > 20 else 0.0, # 極度不平衡時使用標籤平滑
)
# 創建監控器
monitor = TrainingMonitor()
# 創建自定義 Trainer
trainer = CustomTrainer(
model=model,
args=training_args,
train_dataset=split['train'],
eval_dataset=split['test'],
compute_metrics=compute_metrics,
class_weights=weights,
use_focal_loss=use_focal,
focal_gamma=2.0,
monitor=monitor,
early_stopping_patience=patience if use_early_stopping else 999,
early_stopping_metric=f'eval_{best_metric}'
)
info += f"\n🚀 訓練設定\n"
info += f"{'='*50}\n"
info += f"訓練樣本: {len(split['train']):,}\n"
info += f"測試樣本: {len(split['test']):,}\n"
info += f"批次大小: {int(batch_size)}\n"
info += f"訓練輪數: {int(num_epochs)}\n"
info += f"批次數/輪: {len(split['train']) // int(batch_size)}\n"
info += f"Early Stopping: {'開啟 (patience=' + str(patience) + ')' if use_early_stopping else '關閉'}\n"
info += f"最佳指標: {best_metric}\n"
info += f"\n⏳ 開始訓練...\n"
info += f"{'='*50}\n"
# ========== 執行訓練 ==========
train_result = trainer.train()
# 載入最佳模型
if use_early_stopping:
trainer.load_best_model()
# 最終評估
final_results = trainer.evaluate()
# ========== 保存模型與結果 ==========
model_counter += 1
timestamp = datetime.now().strftime("%Y%m%d_%H%M%S")
model_id = f"{base_model}_{method}_{model_counter}_{timestamp}"
trained_models[model_id] = {
'model': model,
'tokenizer': tokenizer,
'results': final_results,
'baseline': baseline_perf,
'config': {
'type': base_model,
'model_name': model_name,
'method': method,
'metric': best_metric,
'epochs': int(num_epochs),
'batch_size': int(batch_size),
'learning_rate': float(learning_rate),
'weight_method': weight_method,
'weight_mult': weight_mult
},
'timestamp': timestamp,
'monitor': monitor # 保存訓練歷史
}
training_histories[model_id] = monitor.history
info += f"\n✅ 訓練完成!\n"
info += f"最終 Training Loss: {train_result.training_loss:.4f}\n"
if monitor.history['best_epoch']:
info += f"最佳 Epoch: {monitor.history['best_epoch']}\n"
# ========== 準備輸出結果 ==========
# 基準模型結果
baseline_output = format_baseline_results(baseline_perf)
# 微調模型結果
finetuned_output = format_finetuned_results(model_id, final_results)
# 比較結果
comparison_output = format_comparison_results(baseline_perf, final_results)
# 訓練歷程
history_output = monitor.get_summary()
return info, baseline_output, finetuned_output, comparison_output, history_output
except Exception as e:
import traceback
error_msg = f"❌ 錯誤發生\n\n錯誤類型: {type(e).__name__}\n錯誤訊息: {str(e)}\n\n"
error_msg += f"詳細追蹤:\n{traceback.format_exc()}"
return error_msg, "", "", "", ""
# ==================== 格式化輸出函數 ====================
def format_baseline_results(baseline_perf: Dict) -> str:
"""格式化基準模型結果"""
output = "🔬 純 BERT(未微調)\n\n"
output += "📊 模型表現\n"
output += f"{'='*30}\n"
output += f"F1 Score: {baseline_perf['f1']:.4f}\n"
output += f"Accuracy: {baseline_perf['accuracy']:.4f}\n"
output += f"Precision: {baseline_perf['precision']:.4f}\n"
output += f"Recall: {baseline_perf['recall']:.4f}\n"
output += f"Sensitivity: {baseline_perf['sensitivity']:.4f}\n"
output += f"Specificity: {baseline_perf['specificity']:.4f}\n"
output += f"PPV: {baseline_perf['ppv']:.4f}\n"
output += f"NPV: {baseline_perf['npv']:.4f}\n\n"
output += "📈 混淆矩陣\n"
output += f"{'='*30}\n"
output += f" 預測 0 預測 1\n"
output += f"實際 0 {baseline_perf['tn']:4d} {baseline_perf['fp']:4d}\n"
output += f"實際 1 {baseline_perf['fn']:4d} {baseline_perf['tp']:4d}\n"
return output
def format_finetuned_results(model_id: str, results: Dict) -> str:
"""格式化微調模型結果"""
output = f"✅ 微調 BERT\n"
output += f"模型 ID: {model_id}\n\n"
output += "📊 模型表現\n"
output += f"{'='*30}\n"
output += f"F1 Score: {results['eval_f1']:.4f}\n"
output += f"Accuracy: {results['eval_accuracy']:.4f}\n"
output += f"Precision: {results['eval_precision']:.4f}\n"
output += f"Recall: {results['eval_recall']:.4f}\n"
output += f"Sensitivity: {results['eval_sensitivity']:.4f}\n"
output += f"Specificity: {results['eval_specificity']:.4f}\n"
output += f"PPV: {results['eval_ppv']:.4f}\n"
output += f"NPV: {results['eval_npv']:.4f}\n\n"
output += "📈 混淆矩陣\n"
output += f"{'='*30}\n"
output += f" 預測 0 預測 1\n"
output += f"實際 0 {results['eval_tn']:4d} {results['eval_fp']:4d}\n"
output += f"實際 1 {results['eval_fn']:4d} {results['eval_tp']:4d}\n"
return output
def format_comparison_results(baseline_perf: Dict, finetuned_results: Dict) -> str:
"""格式化比較結果"""
output = "📊 純 BERT vs 微調 BERT 比較\n\n"
output += "指標改善分析:\n"
output += f"{'='*50}\n"
output += f"{'指標':<12} {'基準':>8} {'微調':>8} {'變化':>10} {'改善率':>10}\n"
output += f"{'-'*50}\n"
metrics = [
('F1', 'f1', 'eval_f1'),
('Accuracy', 'accuracy', 'eval_accuracy'),
('Precision', 'precision', 'eval_precision'),
('Recall', 'recall', 'eval_recall'),
('Sensitivity', 'sensitivity', 'eval_sensitivity'),
('Specificity', 'specificity', 'eval_specificity'),
('PPV', 'ppv', 'eval_ppv'),
('NPV', 'npv', 'eval_npv')
]
for name, base_key, fine_key in metrics:
base_val = baseline_perf[base_key]
fine_val = finetuned_results[fine_key]
change = fine_val - base_val
improve = calculate_improvement(base_val, fine_val)
output += f"{name:<12} {base_val:>8.4f} {fine_val:>8.4f} "
output += f"{change:+10.4f} {format_improvement(improve):>10}\n"
output += f"\n混淆矩陣變化:\n"
output += f"{'='*40}\n"
output += f"{'項目':<10} {'基準':>8} {'微調':>8} {'變化':>10}\n"
output += f"{'-'*40}\n"
cm_items = [
('True Pos', 'tp', 'eval_tp'),
('True Neg', 'tn', 'eval_tn'),
('False Pos', 'fp', 'eval_fp'),
('False Neg', 'fn', 'eval_fn')
]
for name, base_key, fine_key in cm_items:
base_val = baseline_perf[base_key]
fine_val = finetuned_results[fine_key]
change = fine_val - base_val
output += f"{name:<10} {base_val:>8d} {fine_val:>8d} {change:+10d}\n"
# 總結
output += f"\n📈 整體評估:\n"
output += f"{'='*40}\n"
f1_improve = calculate_improvement(baseline_perf['f1'], finetuned_results['eval_f1'])
if f1_improve > 10:
output += "✅ 顯著改善:微調帶來明顯的性能提升!\n"
elif f1_improve > 0:
output += "✅ 有所改善:微調產生正向影響。\n"
elif f1_improve == 0:
output += "➖ 無變化:微調未產生明顯影響。\n"
else:
output += "⚠️ 性能下降:可能需要調整超參數。\n"
return output
# ==================== 預測函數(改進版) ====================
def predict(model_id, text):
"""使用選定模型進行預測並與基準模型比較"""
if not model_id or model_id not in trained_models:
return "❌ 請選擇一個已訓練的模型"
if not text or len(text.strip()) == 0:
return "❌ 請輸入要預測的文字"
try:
# 獲取模型資訊
info = trained_models[model_id]
model = info['model']
tokenizer = info['tokenizer']
config = info['config']
device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
# 文字預處理
inputs = tokenizer(
text,
return_tensors="pt",
truncation=True,
padding=True,
max_length=128
)
inputs_device = {k: v.to(device) for k, v in inputs.items()}
# ========== 微調模型預測 ==========
model.eval()
with torch.no_grad():
outputs = model(**inputs_device)
logits = outputs.logits
probs_finetuned = torch.nn.functional.softmax(logits, dim=-1)
pred_finetuned = torch.argmax(probs_finetuned, dim=-1).item()
confidence_finetuned = probs_finetuned[0][pred_finetuned].item()
# ========== 基準模型預測 ==========
baseline_model = get_cached_baseline_model(config['model_name'])
baseline_model.eval()
with torch.no_grad():
outputs_baseline = baseline_model(**inputs_device)
logits_baseline = outputs_baseline.logits
probs_baseline = torch.nn.functional.softmax(logits_baseline, dim=-1)
pred_baseline = torch.argmax(probs_baseline, dim=-1).item()
confidence_baseline = probs_baseline[0][pred_baseline].item()
# ========== 格式化輸出 ==========
result_finetuned = "🟢 存活" if pred_finetuned == 0 else "🔴 死亡"
result_baseline = "🟢 存活" if pred_baseline == 0 else "🔴 死亡"
agreement = "✅ 一致" if pred_finetuned == pred_baseline else "⚠️ 不一致"
output = f"""🔮 預測結果比較分析
📝 輸入文字
{'='*60}
{text[:200]}{'...' if len(text) > 200 else ''}
{'='*60}
🎯 微調模型預測 ({model_id})
{'='*60}
預測結果: {result_finetuned}
預測信心: {confidence_finetuned:.1%}
機率分布:
• 存活 (0): {probs_finetuned[0][0].item():.2%}
• 死亡 (1): {probs_finetuned[0][1].item():.2%}
模型配置:
• 方法: {config['method'].upper()}
• 基礎模型: {config['type']}
• 訓練輪數: {config['epochs']}
{'='*60}
🔬 基準模型預測(未微調 {config['type']})
{'='*60}
預測結果: {result_baseline}
預測信心: {confidence_baseline:.1%}
機率分布:
• 存活 (0): {probs_baseline[0][0].item():.2%}
• 死亡 (1): {probs_baseline[0][1].item():.2%}
{'='*60}
📊 預測分析
{'='*60}
兩模型預測: {agreement}
"""
if pred_finetuned != pred_baseline:
output += f"""
💡 差異分析:
微調模型預測【{result_finetuned}】(信心: {confidence_finetuned:.1%})
基準模型預測【{result_baseline}】(信心: {confidence_baseline:.1%})
這種差異顯示了微調對此特定案例的影響。
微調模型可能學習到了更適合您資料集的特徵。
"""
else:
output += f"""
✅ 預測一致性分析:
兩個模型都預測為【{result_finetuned}】
信心差異: {abs(confidence_finetuned - confidence_baseline):.1%}
"""
# 加入模型整體表現對比
f1_improve = calculate_improvement(
info['baseline']['f1'],
info['results']['eval_f1']
)
output += f"""
📈 模型整體表現對比
{'='*60}
微調模型 F1: {info['results']['eval_f1']:.4f}
基準模型 F1: {info['baseline']['f1']:.4f}
改善幅度: {format_improvement(f1_improve)}
微調模型準確率: {info['results']['eval_accuracy']:.4f}
基準模型準確率: {info['baseline']['accuracy']:.4f}
"""
return output
except Exception as e:
import traceback
return f"❌ 預測時發生錯誤\n\n{str(e)}\n\n{traceback.format_exc()}"
# ==================== 模型比較函數 ====================
def compare_models():
"""比較所有已訓練的模型"""
if not trained_models:
return "❌ 尚未訓練任何模型。請先在「訓練」頁面訓練模型。"
output = "# 📊 模型比較報告\n\n"
output += f"共有 {len(trained_models)} 個已訓練模型\n\n"
# 微調模型表現表格
output += "## 🎯 微調模型表現\n\n"
output += "| 模型 ID | 基礎模型 | 方法 | F1 | 準確率 | 精確率 | 召回率 | 敏感度 | 特異度 |\n"
output += "|---------|----------|------|-----|--------|--------|--------|--------|--------|\n"
for model_id, info in trained_models.items():
r = info['results']
c = info['config']
# 縮短模型 ID 顯示
short_id = f"{c['type']}_{c['method']}_{info['timestamp'][-6:]}"
output += f"| {short_id} | {c['type']} | {c['method'].upper()} | "
output += f"{r['eval_f1']:.4f} | {r['eval_accuracy']:.4f} | "
output += f"{r['eval_precision']:.4f} | {r['eval_recall']:.4f} | "
output += f"{r['eval_sensitivity']:.4f} | {r['eval_specificity']:.4f} |\n"
# 基準模型表現
output += "\n## 🔬 基準模型表現(未微調)\n\n"
# 獲取唯一的基準模型
unique_baselines = {}
for model_id, info in trained_models.items():
base_type = info['config']['type']
if base_type not in unique_baselines:
unique_baselines[base_type] = info['baseline']
output += "| 基礎模型 | F1 | 準確率 | 精確率 | 召回率 | 敏感度 | 特異度 |\n"
output += "|----------|-----|--------|--------|--------|--------|--------|\n"
for base_type, baseline in unique_baselines.items():
output += f"| {base_type} | {baseline['f1']:.4f} | {baseline['accuracy']:.4f} | "
output += f"{baseline['precision']:.4f} | {baseline['recall']:.4f} | "
output += f"{baseline['sensitivity']:.4f} | {baseline['specificity']:.4f} |\n"
# 最佳模型分析
output += "\n## 🏆 最佳模型(各指標)\n\n"
metrics_to_check = [
('F1 Score', 'eval_f1'),
('準確率', 'eval_accuracy'),
('精確率', 'eval_precision'),
('召回率', 'eval_recall'),
('敏感度', 'eval_sensitivity'),
('特異度', 'eval_specificity')
]
for metric_name, metric_key in metrics_to_check:
best_model = max(
trained_models.items(),
key=lambda x: x[1]['results'][metric_key]
)
model_id = best_model[0]
value = best_model[1]['results'][metric_key]
baseline_val = best_model[1]['baseline'][metric_key.replace('eval_', '')]
improvement = calculate_improvement(baseline_val, value)
output += f"**{metric_name}**: {model_id[:30]}... "
output += f"({value:.4f}, 改善 {format_improvement(improvement)})\n\n"
# 改善統計
output += "## 📈 改善統計\n\n"
improvements = []
for model_id, info in trained_models.items():
f1_base = info['baseline']['f1']
f1_fine = info['results']['eval_f1']
improve = calculate_improvement(f1_base, f1_fine)
if improve != float('inf'):
improvements.append({
'model': model_id,
'improvement': improve,
'method': info['config']['method']
})
if improvements:
avg_improvement = np.mean([x['improvement'] for x in improvements])
max_improvement = max(improvements, key=lambda x: x['improvement'])
min_improvement = min(improvements, key=lambda x: x['improvement'])
output += f"平均 F1 改善: {format_improvement(avg_improvement)}\n"
output += f"最大改善: {max_improvement['model'][:30]}... ({format_improvement(max_improvement['improvement'])})\n"
output += f"最小改善: {min_improvement['model'][:30]}... ({format_improvement(min_improvement['improvement'])})\n\n"
# 方法比較
method_improvements = {}
for imp in improvements:
method = imp['method']
if method not in method_improvements:
method_improvements[method] = []
method_improvements[method].append(imp['improvement'])
output += "### 各方法平均改善:\n"
for method, imps in method_improvements.items():
avg_imp = np.mean(imps)
output += f"- **{method.upper()}**: {format_improvement(avg_imp)}\n"
return output
# ==================== Gradio UI ====================
def create_demo():
"""創建 Gradio 介面"""
with gr.Blocks(
title="BERT Fine-tuning 教學平台",
theme=gr.themes.Soft(),
css="""
.gradio-container {font-family: 'Microsoft JhengHei', 'Arial', sans-serif;}
"""
) as demo:
gr.Markdown(
"""
# 🧬 BERT Fine-tuning 教學平台
### 比較基準模型 vs 微調模型的表現差異(改進版)
"""
)
with gr.Tab("🎯 訓練"):
gr.Markdown("## 步驟 1: 選擇基礎模型")
base_model = gr.Dropdown(
choices=["BERT-base", "BERT-base-chinese", "BioBERT", "SciBERT"],
value="BERT-base",
label="基礎模型",
info="選擇適合您資料的預訓練模型"
)
gr.Markdown("## 步驟 2: 選擇微調方法")
method = gr.Radio(
choices=["lora", "adalora", "full"],
value="lora",
label="微調方法",
info="LoRA 和 AdaLoRA 是參數高效方法,Full 是完全微調"
)
gr.Markdown("## 步驟 3: 上傳資料")
csv_file = gr.File(
label="CSV 檔案(需包含 Text 和 label 欄位)",
file_types=[".csv"]
)
gr.Markdown("## 步驟 4: 設定訓練參數")
with gr.Accordion("🎯 基本訓練參數", open=True):
with gr.Row():
num_epochs = gr.Number(
value=5, label="訓練輪數", minimum=1, maximum=50, precision=0,
info="建議 3-10 輪,過多可能過擬合"
)
batch_size = gr.Number(
value=8, label="批次大小", minimum=1, maximum=64, precision=0,
info="GPU 記憶體不足時請降低"
)
learning_rate = gr.Number(
value=3e-5, label="學習率", minimum=1e-6, maximum=1e-3,
info="建議 1e-5 到 5e-5"
)
with gr.Accordion("⚙️ 進階參數"):
with gr.Row():
weight_decay = gr.Number(
value=0.01, label="權重衰減", minimum=0, maximum=1,
info="防止過擬合,建議 0.01-0.1"
)
dropout = gr.Number(
value=0.1, label="Dropout 率", minimum=0, maximum=0.5,
info="防止過擬合,建議 0.1-0.3"
)
with gr.Accordion("🔧 PEFT 參數(LoRA/AdaLoRA)"):
with gr.Row():
lora_r = gr.Number(
value=16, label="LoRA Rank (r)", minimum=1, maximum=64, precision=0,
info="越大表達能力越強,但參數越多"
)
lora_alpha = gr.Number(
value=32, label="LoRA Alpha", minimum=1, maximum=128, precision=0,
info="通常設為 Rank 的 2 倍"
)
lora_dropout = gr.Number(
value=0.05, label="LoRA Dropout", minimum=0, maximum=0.5,
info="LoRA 層的 dropout"
)
with gr.Accordion("⚖️ 類別平衡設定"):
with gr.Row():
weight_mult = gr.Number(
value=1.0, label="權重倍數", minimum=0.1, maximum=5.0,
info="調整少數類權重的倍數"
)
weight_method = gr.Dropdown(
choices=["sqrt", "log", "balanced", "custom"],
value="sqrt",
label="權重計算方法",
info="sqrt 和 log 適合極度不平衡資料"
)
with gr.Accordion("🎯 訓練策略"):
with gr.Row():
best_metric = gr.Dropdown(
choices=["f1", "accuracy", "precision", "recall", "sensitivity", "specificity"],
value="f1",
label="最佳模型指標",
info="根據此指標選擇最佳模型"
)
use_early_stopping = gr.Checkbox(
value=True, label="啟用 Early Stopping",
info="當模型不再改善時提前停止"
)
patience = gr.Number(
value=3, label="Patience", minimum=1, maximum=10, precision=0,
info="幾輪無改善後停止訓練"
)
train_btn = gr.Button("🚀 開始訓練", variant="primary", size="lg")
gr.Markdown("## 📊 訓練結果")
with gr.Row():
data_info = gr.Textbox(label="📋 訓練資訊", lines=25)
history_output = gr.Textbox(label="📈 訓練歷程", lines=25)
with gr.Row():
baseline_result = gr.Textbox(label="🔬 基準模型(未微調)", lines=15)
finetuned_result = gr.Textbox(label="✅ 微調模型", lines=15)
comparison_result = gr.Textbox(label="📊 效能比較分析", lines=20)
train_btn.click(
train_bert_model,
inputs=[
csv_file, base_model, method, num_epochs, batch_size, learning_rate,
weight_decay, dropout, lora_r, lora_alpha, lora_dropout,
weight_mult, weight_method, best_metric, use_early_stopping, patience
],
outputs=[data_info, baseline_result, finetuned_result, comparison_result, history_output]
)
with gr.Tab("🔮 預測"):
gr.Markdown("## 使用訓練好的模型進行預測")
with gr.Row():
model_dropdown = gr.Dropdown(
label="選擇模型",
choices=list(trained_models.keys()),
interactive=True
)
refresh_btn = gr.Button("🔄 刷新模型列表", size="sm")
text_input = gr.Textbox(
label="輸入要預測的文字",
lines=5,
placeholder="請輸入病例描述或相關文字..."
)
predict_btn = gr.Button("🎯 執行預測", variant="primary", size="lg")
pred_output = gr.Textbox(label="預測結果與分析", lines=25)
# 刷新模型列表
refresh_btn.click(
lambda: gr.Dropdown(choices=list(trained_models.keys())),
outputs=[model_dropdown]
)
# 執行預測
predict_btn.click(
predict,
inputs=[model_dropdown, text_input],
outputs=[pred_output]
)
# 範例
gr.Examples(
examples=[
["Patient with stage II breast cancer, showing good response to chemotherapy treatment."],
["Advanced metastatic cancer with multiple organ failure, poor prognosis."],
["Early stage tumor detected, surgery scheduled, excellent recovery expected."],
["Terminal stage disease, palliative care initiated, family counseling provided."]
],
inputs=text_input
)
with gr.Tab("📊 比較"):
gr.Markdown("## 比較所有已訓練的模型")
compare_btn = gr.Button("📊 生成比較報告", variant="primary", size="lg")
compare_output = gr.Markdown()
compare_btn.click(compare_models, outputs=[compare_output])
with gr.Tab("📖 說明"):
gr.Markdown("""
## 📖 使用說明
### 🎯 平台特色
本改進版平台提供以下功能:
1. **自動基準比較**:每次訓練都會自動評估基準模型,清楚顯示微調的改善
2. **訓練監控**:記錄每個 epoch 的詳細訓練歷程
3. **Early Stopping**:避免過擬合,自動選擇最佳模型
4. **多種權重策略**:針對不平衡資料提供多種處理方法
5. **完整評估指標**:包含 F1、準確率、精確率、召回率、敏感度、特異度、PPV、NPV
### 🤖 支援的基礎模型
- **BERT-base**: 標準英文 BERT,適用於一般英文文本
- **BERT-base-chinese**: 中文 BERT,適用於中文文本
- **BioBERT**: 生物醫學領域專用 BERT
- **SciBERT**: 科學文獻專用 BERT
### 🔧 微調方法說明
- **LoRA** (Low-Rank Adaptation)
- 參數效率最高,只訓練 <1% 參數
- 訓練速度快,記憶體需求低
- 適合大多數場景
- **AdaLoRA** (Adaptive LoRA)
- 自動調整秩的分配
- 可能獲得更好的效果
- 訓練時間稍長
- **Full** (完全微調)
- 訓練所有參數
- 可能獲得最佳效果
- 需要較大記憶體和時間
### ⚖️ 處理不平衡資料
#### 權重計算方法:
1. **sqrt** (平方根法) - 推薦用於極度不平衡
- 使用平方根緩和權重
- 避免權重過大導致過擬合
2. **log** (對數法) - 更保守的方法
- 使用對數進一步緩和
- 適合極度不平衡且容易過擬合的情況
3. **balanced** (平衡法)
- sklearn 風格的自動平衡
- 適合中度不平衡
4. **custom** (自定義)
- 根據不平衡程度自動調整
- 綜合考慮多種因素
#### 建議參數設定:
**極度不平衡 (>20:1)**
- 權重方法: sqrt 或 log
- 權重倍數: 0.5-1.0
- 使用 Focal Loss (自動啟用)
- Early Stopping: 建議開啟
**高度不平衡 (10-20:1)**
- 權重方法: sqrt
- 權重倍數: 0.8-1.5
- Early Stopping: 建議開啟
**中度不平衡 (5-10:1)**
- 權重方法: balanced
- 權重倍數: 1.0-2.0
**輕度不平衡 (<5:1)**
- 權重方法: balanced
- 權重倍數: 1.5-3.0
### 📊 評估指標說明
- **F1 Score**: 精確率和召回率的調和平均,適合不平衡資料
- **Accuracy**: 整體準確率
- **Precision**: 預測為正類中實際為正類的比例
- **Recall/Sensitivity**: 實際正類中被正確預測的比例
- **Specificity**: 實際負類中被正確預測的比例
- **PPV**: 陽性預測值
- **NPV**: 陰性預測值
### 🚀 快速開始指南
1. **準備資料**
- CSV 格式,包含 `Text` 和 `label` 欄位
- label: 0=負類(如存活), 1=正類(如死亡)
2. **選擇模型與方法**
- 英文資料:BERT-base + LoRA
- 中文資料:BERT-base-chinese + LoRA
- 醫學資料:BioBERT + LoRA
3. **設定參數**
- 使用預設參數作為起點
- 根據資料不平衡程度調整權重設定
4. **訓練與評估**
- 點擊「開始訓練」
- 查看基準 vs 微調的比較
- 觀察訓練歷程
5. **測試預測**
- 在「預測」頁面選擇模型
- 輸入文字進行預測
- 比較微調前後的差異
### ⚠️ 注意事項
- GPU 可大幅加速訓練
- 批次大小過大可能導致記憶體不足
- Early Stopping 可避免過擬合
- 極度不平衡資料建議使用較保守的權重設定
### 💡 優化建議
1. **記憶體不足**:降低批次大小或使用 LoRA
2. **過擬合**:增加 dropout、使用 Early Stopping、降低學習率
3. **欠擬合**:增加訓練輪數、提高學習率、增加模型容量
4. **不平衡資料**:調整類別權重、使用適當的評估指標(F1)
""")
return demo
# ==================== 主程式 ====================
if __name__ == "__main__":
demo = create_demo()
demo.launch(
server_name="0.0.0.0",
server_port=7860,
share=False,
max_threads=4
) |