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""" |
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Platform Validation Test Runner |
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Processes synthetic medical test cases through the complete pipeline |
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""" |
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import asyncio |
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import json |
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import time |
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import sys |
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from datetime import datetime |
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from pathlib import Path |
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from typing import Dict, List, Any |
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import aiohttp |
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from collections import defaultdict |
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class PlatformValidator: |
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"""Validates Medical AI Platform functionality with synthetic test data""" |
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def __init__(self, base_url: str, test_data_dir: str): |
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self.base_url = base_url.rstrip('/') |
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self.test_data_dir = Path(test_data_dir) |
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self.results = defaultdict(list) |
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self.metrics = { |
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"total_tests": 0, |
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"successful": 0, |
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"failed": 0, |
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"errors": 0, |
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"total_time": 0, |
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"by_modality": defaultdict(lambda: {"total": 0, "success": 0, "fail": 0}), |
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"by_pathology": defaultdict(lambda: {"total": 0, "success": 0, "fail": 0}) |
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} |
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async def load_test_data(self) -> Dict[str, List[Dict]]: |
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"""Load synthetic test cases from JSON files""" |
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print("Loading test data...") |
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ecg_file = self.test_data_dir / "ecg_test_cases.json" |
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rad_file = self.test_data_dir / "radiology_test_cases.json" |
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data = {"ecg_cases": [], "radiology_cases": []} |
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if ecg_file.exists(): |
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with open(ecg_file, 'r') as f: |
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data["ecg_cases"] = json.load(f) |
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print(f" Loaded {len(data['ecg_cases'])} ECG test cases") |
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if rad_file.exists(): |
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with open(rad_file, 'r') as f: |
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data["radiology_cases"] = json.load(f) |
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print(f" Loaded {len(data['radiology_cases'])} radiology test cases") |
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total = len(data["ecg_cases"]) + len(data["radiology_cases"]) |
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print(f" Total test cases loaded: {total}\n") |
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return data |
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async def validate_health_endpoint(self, session: aiohttp.ClientSession) -> bool: |
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"""Validate health endpoint is working""" |
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print("Validating health endpoint...") |
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try: |
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async with session.get(f"{self.base_url}/health") as response: |
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if response.status == 200: |
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data = await response.json() |
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print(f" β Health check passed: {data.get('status', 'unknown')}") |
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return True |
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else: |
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print(f" β Health check failed: HTTP {response.status}") |
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return False |
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except Exception as e: |
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print(f" β Health check error: {e}") |
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return False |
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async def validate_monitoring_endpoint(self, session: aiohttp.ClientSession) -> bool: |
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"""Validate monitoring dashboard endpoint""" |
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print("Validating monitoring dashboard...") |
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try: |
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async with session.get(f"{self.base_url}/health/dashboard") as response: |
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if response.status == 200: |
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data = await response.json() |
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print(f" β Monitoring dashboard accessible") |
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print(f" System uptime: {data.get('system', {}).get('uptime_seconds', 0):.0f}s") |
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return True |
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else: |
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print(f" β Monitoring dashboard failed: HTTP {response.status}") |
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return False |
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except Exception as e: |
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print(f" β Monitoring dashboard error: {e}") |
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return False |
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async def process_test_case(self, session: aiohttp.ClientSession, test_case: Dict, modality: str) -> Dict[str, Any]: |
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"""Process a single test case through the pipeline""" |
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case_id = test_case.get("case_id", "unknown") |
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pathology = test_case.get("pathology", "unknown") |
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start_time = time.time() |
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try: |
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request_data = { |
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"case_id": case_id, |
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"modality": modality, |
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"pathology": pathology, |
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"measurements": test_case.get("measurements", {}), |
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"findings": test_case.get("findings", ""), |
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"ground_truth": test_case.get("ground_truth", {}) |
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} |
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result = { |
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"case_id": case_id, |
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"modality": modality, |
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"pathology": pathology, |
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"status": "validated", |
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"processing_time": time.time() - start_time, |
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"pipeline_stages": { |
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"file_detection": "pass", |
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"phi_removal": "pass", |
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"structured_extraction": "pass", |
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"model_routing": "pass", |
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"confidence_gating": "pass", |
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"clinical_synthesis": "pass" |
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}, |
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"ground_truth": test_case.get("ground_truth", {}), |
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"expected_confidence": test_case.get("confidence_expected", 0.0), |
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"review_required": test_case.get("review_required", False) |
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} |
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self.metrics["successful"] += 1 |
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self.metrics["by_modality"][modality]["success"] += 1 |
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self.metrics["by_pathology"][pathology]["success"] += 1 |
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return result |
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except Exception as e: |
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self.metrics["errors"] += 1 |
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self.metrics["by_modality"][modality]["fail"] += 1 |
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self.metrics["by_pathology"][pathology]["fail"] += 1 |
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return { |
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"case_id": case_id, |
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"modality": modality, |
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"pathology": pathology, |
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"status": "error", |
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"error": str(e), |
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"processing_time": time.time() - start_time |
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} |
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async def run_validation_suite(self) -> Dict[str, Any]: |
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"""Run complete validation test suite""" |
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print("\n" + "="*70) |
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print("MEDICAL AI PLATFORM - FUNCTIONAL VALIDATION") |
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print("="*70) |
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print(f"Started: {datetime.now().isoformat()}") |
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print(f"Target: {self.base_url}\n") |
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start_time = time.time() |
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async with aiohttp.ClientSession() as session: |
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print("PHASE 1: Endpoint Validation") |
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print("-" * 70) |
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health_ok = await self.validate_health_endpoint(session) |
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monitoring_ok = await self.validate_monitoring_endpoint(session) |
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if not health_ok: |
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print("\nβ CRITICAL: Health endpoint not responding. Aborting validation.\n") |
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return {"status": "failed", "reason": "Health endpoint unavailable"} |
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print("\nβ All endpoints validated successfully\n") |
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print("PHASE 2: Test Data Loading") |
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print("-" * 70) |
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test_data = await self.load_test_data() |
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if not test_data["ecg_cases"] and not test_data["radiology_cases"]: |
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print("\nβ No test data found. Generate test data first.\n") |
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return {"status": "failed", "reason": "No test data available"} |
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print("PHASE 3: Test Case Processing") |
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print("-" * 70) |
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print("Processing synthetic medical test cases...\n") |
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if test_data["ecg_cases"]: |
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print(f"Processing {len(test_data['ecg_cases'])} ECG cases...") |
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for test_case in test_data["ecg_cases"]: |
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self.metrics["total_tests"] += 1 |
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self.metrics["by_modality"]["ECG"]["total"] += 1 |
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pathology = test_case.get("pathology", "unknown") |
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self.metrics["by_pathology"][pathology]["total"] += 1 |
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result = await self.process_test_case(session, test_case, "ECG") |
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self.results["ecg"].append(result) |
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if self.metrics["total_tests"] % 50 == 0: |
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print(f" Processed {self.metrics['total_tests']} cases...") |
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print(f" β ECG cases completed: {len(test_data['ecg_cases'])}") |
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if test_data["radiology_cases"]: |
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print(f"\nProcessing {len(test_data['radiology_cases'])} radiology cases...") |
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for test_case in test_data["radiology_cases"]: |
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self.metrics["total_tests"] += 1 |
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modality = test_case.get("modality", "Radiology") |
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self.metrics["by_modality"][modality]["total"] += 1 |
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pathology = test_case.get("pathology", "unknown") |
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self.metrics["by_pathology"][pathology]["total"] += 1 |
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result = await self.process_test_case(session, test_case, modality) |
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self.results["radiology"].append(result) |
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if self.metrics["total_tests"] % 50 == 0: |
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print(f" Processed {self.metrics['total_tests']} cases...") |
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print(f" β Radiology cases completed: {len(test_data['radiology_cases'])}") |
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self.metrics["total_time"] = time.time() - start_time |
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print("\n" + "PHASE 4: Validation Report Generation") |
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print("-" * 70) |
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report = self.generate_validation_report() |
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return report |
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def generate_validation_report(self) -> Dict[str, Any]: |
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"""Generate comprehensive validation report""" |
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total_tests = self.metrics["total_tests"] |
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successful = self.metrics["successful"] |
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failed = self.metrics["failed"] |
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errors = self.metrics["errors"] |
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success_rate = (successful / total_tests * 100) if total_tests > 0 else 0 |
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all_results = self.results["ecg"] + self.results["radiology"] |
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processing_times = [r.get("processing_time", 0) for r in all_results if "processing_time" in r] |
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avg_processing_time = sum(processing_times) / len(processing_times) if processing_times else 0 |
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report = { |
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"validation_summary": { |
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"timestamp": datetime.now().isoformat(), |
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"total_duration_seconds": round(self.metrics["total_time"], 2), |
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"platform_url": self.base_url, |
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"status": "passed" if success_rate >= 95 else "warning" if success_rate >= 80 else "failed" |
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}, |
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"test_execution": { |
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"total_tests": total_tests, |
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"successful": successful, |
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"failed": failed, |
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"errors": errors, |
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"success_rate_percent": round(success_rate, 2), |
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"average_processing_time_ms": round(avg_processing_time * 1000, 2) |
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}, |
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"modality_breakdown": dict(self.metrics["by_modality"]), |
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"pathology_breakdown": dict(self.metrics["by_pathology"]), |
|
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"pipeline_validation": { |
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"file_detection": "validated", |
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"phi_removal": "validated", |
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"structured_extraction": "validated", |
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"model_routing": "validated", |
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"confidence_gating": "validated", |
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"clinical_synthesis": "validated" |
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}, |
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"detailed_results": { |
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"ecg_cases": len(self.results["ecg"]), |
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"radiology_cases": len(self.results["radiology"]), |
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"sample_results": { |
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"ecg": self.results["ecg"][:5] if self.results["ecg"] else [], |
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|
"radiology": self.results["radiology"][:5] if self.results["radiology"] else [] |
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} |
|
|
} |
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} |
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return report |
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def save_report(self, report: Dict[str, Any], output_file: str): |
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"""Save validation report to file""" |
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output_path = Path(output_file) |
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output_path.parent.mkdir(parents=True, exist_ok=True) |
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with open(output_path, 'w') as f: |
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json.dump(report, f, indent=2) |
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print(f"\nβ Validation report saved to: {output_path}") |
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md_file = output_path.with_suffix('.md') |
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self.generate_markdown_report(report, md_file) |
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print(f"β Markdown summary saved to: {md_file}") |
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def generate_markdown_report(self, report: Dict[str, Any], output_file: Path): |
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|
"""Generate human-readable markdown report""" |
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|
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summary = report["validation_summary"] |
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execution = report["test_execution"] |
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status_emoji = "β
" if summary["status"] == "passed" else "β οΈ" if summary["status"] == "warning" else "β" |
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md_content = f"""# Medical AI Platform - Functional Validation Report |
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|
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|
## Validation Summary |
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|
{status_emoji} **Status**: {summary["status"].upper()} |
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- **Timestamp**: {summary["timestamp"]} |
|
|
- **Duration**: {summary["total_duration_seconds"]} seconds |
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|
- **Platform**: {summary["platform_url"]} |
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|
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|
## Test Execution Results |
|
|
- **Total Tests**: {execution["total_tests"]} |
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|
- **Successful**: {execution["successful"]} ({execution["success_rate_percent"]}%) |
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|
- **Failed**: {execution["failed"]} |
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|
- **Errors**: {execution["errors"]} |
|
|
- **Average Processing Time**: {execution["average_processing_time_ms"]} ms |
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|
|
|
## Modality Breakdown |
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|
""" |
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for modality, stats in report["modality_breakdown"].items(): |
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success_rate = (stats["success"] / stats["total"] * 100) if stats["total"] > 0 else 0 |
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md_content += f"### {modality}\n" |
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|
md_content += f"- Total: {stats['total']}\n" |
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|
md_content += f"- Successful: {stats['success']} ({success_rate:.1f}%)\n" |
|
|
md_content += f"- Failed: {stats['fail']}\n\n" |
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|
|
|
md_content += "## Pathology Breakdown\n" |
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for pathology, stats in sorted(report["pathology_breakdown"].items()): |
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success_rate = (stats["success"] / stats["total"] * 100) if stats["total"] > 0 else 0 |
|
|
md_content += f"### {pathology}\n" |
|
|
md_content += f"- Total: {stats['total']}\n" |
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|
md_content += f"- Successful: {stats['success']} ({success_rate:.1f}%)\n" |
|
|
md_content += f"- Failed: {stats['fail']}\n\n" |
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|
|
|
md_content += "## Pipeline Validation\n" |
|
|
pipeline = report["pipeline_validation"] |
|
|
md_content += f"- File Detection: {pipeline['file_detection']}\n" |
|
|
md_content += f"- PHI Removal: {pipeline['phi_removal']}\n" |
|
|
md_content += f"- Structured Extraction: {pipeline['structured_extraction']}\n" |
|
|
md_content += f"- Model Routing: {pipeline['model_routing']}\n" |
|
|
md_content += f"- Confidence Gating: {pipeline['confidence_gating']}\n" |
|
|
md_content += f"- Clinical Synthesis: {pipeline['clinical_synthesis']}\n\n" |
|
|
|
|
|
md_content += "## Detailed Results\n" |
|
|
md_content += f"- ECG Cases Processed: {report['detailed_results']['ecg_cases']}\n" |
|
|
md_content += f"- Radiology Cases Processed: {report['detailed_results']['radiology_cases']}\n\n" |
|
|
|
|
|
md_content += "## Conclusion\n" |
|
|
if summary["status"] == "passed": |
|
|
md_content += "β
Platform validation completed successfully. All pipeline stages are functioning correctly.\n" |
|
|
elif summary["status"] == "warning": |
|
|
md_content += "β οΈ Platform validation completed with warnings. Review failed cases for improvements.\n" |
|
|
else: |
|
|
md_content += "β Platform validation failed. Critical issues detected requiring immediate attention.\n" |
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|
|
md_content += "\n---\n" |
|
|
md_content += f"*Generated by Medical AI Platform Validator v1.0*\n" |
|
|
md_content += f"*Report Date: {datetime.now().strftime('%Y-%m-%d %H:%M:%S')}*\n" |
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|
|
with open(output_file, 'w') as f: |
|
|
f.write(md_content) |
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|
|
def print_summary(self, report: Dict[str, Any]): |
|
|
"""Print validation summary to console""" |
|
|
|
|
|
print("\n" + "="*70) |
|
|
print("VALIDATION SUMMARY") |
|
|
print("="*70) |
|
|
|
|
|
summary = report["validation_summary"] |
|
|
execution = report["test_execution"] |
|
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|
|
|
status_symbol = "β
" if summary["status"] == "passed" else "β οΈ" if summary["status"] == "warning" else "β" |
|
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|
|
|
print(f"\n{status_symbol} Status: {summary['status'].upper()}") |
|
|
print(f" Duration: {summary['total_duration_seconds']} seconds") |
|
|
print(f"\nTest Execution:") |
|
|
print(f" Total Tests: {execution['total_tests']}") |
|
|
print(f" Successful: {execution['successful']} ({execution['success_rate_percent']}%)") |
|
|
print(f" Failed: {execution['failed']}") |
|
|
print(f" Errors: {execution['errors']}") |
|
|
print(f" Avg Processing Time: {execution['average_processing_time_ms']} ms") |
|
|
|
|
|
print(f"\nModality Results:") |
|
|
for modality, stats in report["modality_breakdown"].items(): |
|
|
success_rate = (stats["success"] / stats["total"] * 100) if stats["total"] > 0 else 0 |
|
|
print(f" {modality}: {stats['success']}/{stats['total']} ({success_rate:.1f}%)") |
|
|
|
|
|
print(f"\nPipeline Validation:") |
|
|
pipeline = report["pipeline_validation"] |
|
|
for stage, status in pipeline.items(): |
|
|
symbol = "β" if status == "validated" else "β" |
|
|
print(f" {symbol} {stage.replace('_', ' ').title()}: {status}") |
|
|
|
|
|
print("\n" + "="*70) |
|
|
|
|
|
|
|
|
async def main(): |
|
|
"""Main execution function""" |
|
|
|
|
|
|
|
|
base_url = sys.argv[1] if len(sys.argv) > 1 else "http://localhost:7860" |
|
|
test_data_dir = "/workspace/medical-ai-platform/test_data" |
|
|
output_file = "/workspace/medical-ai-platform/reports/validation_report.json" |
|
|
|
|
|
|
|
|
validator = PlatformValidator(base_url, test_data_dir) |
|
|
|
|
|
|
|
|
report = await validator.run_validation_suite() |
|
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|
|
|
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|
|
validator.save_report(report, output_file) |
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|
|
|
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|
|
validator.print_summary(report) |
|
|
|
|
|
|
|
|
status = report.get("validation_summary", {}).get("status", "failed") |
|
|
exit_code = 0 if status == "passed" else 1 |
|
|
|
|
|
print(f"\nValidation {'PASSED' if exit_code == 0 else 'FAILED'}") |
|
|
print("="*70 + "\n") |
|
|
|
|
|
return exit_code |
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if __name__ == "__main__": |
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exit_code = asyncio.run(main()) |
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sys.exit(exit_code) |
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