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Deploy medical_prompt_templates.py to backend/ directory
Browse files
backend/medical_prompt_templates.py
ADDED
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| 1 |
+
"""
|
| 2 |
+
Medical Prompt Templates for MedGemma Synthesis
|
| 3 |
+
Comprehensive templates for generating clinician-level and patient-friendly summaries
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| 4 |
+
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| 5 |
+
Author: MiniMax Agent
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| 6 |
+
Date: 2025-10-29
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| 7 |
+
Version: 1.0.0
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| 8 |
+
"""
|
| 9 |
+
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| 10 |
+
from typing import Dict, Any, List, Optional
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| 11 |
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from enum import Enum
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| 12 |
+
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| 13 |
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| 14 |
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class SummaryType(Enum):
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| 15 |
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"""Types of medical summaries that can be generated"""
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| 16 |
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CLINICIAN_TECHNICAL = "clinician_technical"
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| 17 |
+
PATIENT_FRIENDLY = "patient_friendly"
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| 18 |
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MULTI_MODAL = "multi_modal"
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| 19 |
+
RISK_ASSESSMENT = "risk_assessment"
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| 20 |
+
|
| 21 |
+
|
| 22 |
+
class PromptTemplateLibrary:
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| 23 |
+
"""
|
| 24 |
+
Comprehensive library of medical prompt templates for MedGemma
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| 25 |
+
Supports all medical modalities with evidence-based generation
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| 26 |
+
"""
|
| 27 |
+
|
| 28 |
+
@staticmethod
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| 29 |
+
def get_clinician_summary_template(
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| 30 |
+
modality: str,
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| 31 |
+
structured_data: Dict[str, Any],
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| 32 |
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model_outputs: List[Dict[str, Any]],
|
| 33 |
+
confidence_scores: Dict[str, float]
|
| 34 |
+
) -> str:
|
| 35 |
+
"""
|
| 36 |
+
Generate clinician-level technical summary prompt
|
| 37 |
+
|
| 38 |
+
Features:
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| 39 |
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- Technical medical terminology
|
| 40 |
+
- Detailed analysis with evidence
|
| 41 |
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- Confidence scores and uncertainty
|
| 42 |
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- Clinical decision support
|
| 43 |
+
"""
|
| 44 |
+
|
| 45 |
+
if modality == "ECG":
|
| 46 |
+
return PromptTemplateLibrary._ecg_clinician_template(
|
| 47 |
+
structured_data, model_outputs, confidence_scores
|
| 48 |
+
)
|
| 49 |
+
elif modality == "radiology":
|
| 50 |
+
return PromptTemplateLibrary._radiology_clinician_template(
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| 51 |
+
structured_data, model_outputs, confidence_scores
|
| 52 |
+
)
|
| 53 |
+
elif modality == "laboratory":
|
| 54 |
+
return PromptTemplateLibrary._laboratory_clinician_template(
|
| 55 |
+
structured_data, model_outputs, confidence_scores
|
| 56 |
+
)
|
| 57 |
+
elif modality == "clinical_notes":
|
| 58 |
+
return PromptTemplateLibrary._clinical_notes_clinician_template(
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| 59 |
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structured_data, model_outputs, confidence_scores
|
| 60 |
+
)
|
| 61 |
+
else:
|
| 62 |
+
return PromptTemplateLibrary._general_clinician_template(
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| 63 |
+
structured_data, model_outputs, confidence_scores
|
| 64 |
+
)
|
| 65 |
+
|
| 66 |
+
@staticmethod
|
| 67 |
+
def get_patient_summary_template(
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| 68 |
+
modality: str,
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| 69 |
+
structured_data: Dict[str, Any],
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| 70 |
+
model_outputs: List[Dict[str, Any]],
|
| 71 |
+
confidence_scores: Dict[str, float]
|
| 72 |
+
) -> str:
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| 73 |
+
"""
|
| 74 |
+
Generate patient-friendly summary prompt
|
| 75 |
+
|
| 76 |
+
Features:
|
| 77 |
+
- Plain language explanations
|
| 78 |
+
- Key findings highlighted
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| 79 |
+
- Actionable next steps
|
| 80 |
+
- Reassurance when appropriate
|
| 81 |
+
"""
|
| 82 |
+
|
| 83 |
+
if modality == "ECG":
|
| 84 |
+
return PromptTemplateLibrary._ecg_patient_template(
|
| 85 |
+
structured_data, model_outputs, confidence_scores
|
| 86 |
+
)
|
| 87 |
+
elif modality == "radiology":
|
| 88 |
+
return PromptTemplateLibrary._radiology_patient_template(
|
| 89 |
+
structured_data, model_outputs, confidence_scores
|
| 90 |
+
)
|
| 91 |
+
elif modality == "laboratory":
|
| 92 |
+
return PromptTemplateLibrary._laboratory_patient_template(
|
| 93 |
+
structured_data, model_outputs, confidence_scores
|
| 94 |
+
)
|
| 95 |
+
elif modality == "clinical_notes":
|
| 96 |
+
return PromptTemplateLibrary._clinical_notes_patient_template(
|
| 97 |
+
structured_data, model_outputs, confidence_scores
|
| 98 |
+
)
|
| 99 |
+
else:
|
| 100 |
+
return PromptTemplateLibrary._general_patient_template(
|
| 101 |
+
structured_data, model_outputs, confidence_scores
|
| 102 |
+
)
|
| 103 |
+
|
| 104 |
+
# ========================
|
| 105 |
+
# ECG TEMPLATES
|
| 106 |
+
# ========================
|
| 107 |
+
|
| 108 |
+
@staticmethod
|
| 109 |
+
def _ecg_clinician_template(
|
| 110 |
+
data: Dict[str, Any],
|
| 111 |
+
outputs: List[Dict[str, Any]],
|
| 112 |
+
confidence: Dict[str, float]
|
| 113 |
+
) -> str:
|
| 114 |
+
"""Clinician-level ECG summary template"""
|
| 115 |
+
|
| 116 |
+
intervals = data.get("intervals", {})
|
| 117 |
+
rhythm = data.get("rhythm_classification", {})
|
| 118 |
+
arrhythmia_probs = data.get("arrhythmia_probabilities", {})
|
| 119 |
+
derived = data.get("derived_features", {})
|
| 120 |
+
|
| 121 |
+
overall_confidence = confidence.get("overall_confidence", 0.0)
|
| 122 |
+
|
| 123 |
+
prompt = f"""You are a medical AI assistant generating a comprehensive ECG analysis report for clinicians.
|
| 124 |
+
|
| 125 |
+
PATIENT CONTEXT:
|
| 126 |
+
- Document ID: {data.get('metadata', {}).get('document_id', 'N/A')}
|
| 127 |
+
- Facility: {data.get('metadata', {}).get('facility', 'N/A')}
|
| 128 |
+
- Recording Date: {data.get('metadata', {}).get('document_date', 'N/A')}
|
| 129 |
+
|
| 130 |
+
ECG MEASUREMENTS:
|
| 131 |
+
- Heart Rate: {rhythm.get('heart_rate_bpm', 'N/A')} bpm
|
| 132 |
+
- PR Interval: {intervals.get('pr_ms', 'N/A')} ms
|
| 133 |
+
- QRS Duration: {intervals.get('qrs_ms', 'N/A')} ms
|
| 134 |
+
- QT Interval: {intervals.get('qt_ms', 'N/A')} ms
|
| 135 |
+
- QTc Interval: {intervals.get('qtc_ms', 'N/A')} ms
|
| 136 |
+
- RR Interval: {intervals.get('rr_ms', 'N/A')} ms
|
| 137 |
+
|
| 138 |
+
RHYTHM ANALYSIS:
|
| 139 |
+
- Primary Rhythm: {rhythm.get('primary_rhythm', 'N/A')}
|
| 140 |
+
- Rhythm Regularity: {rhythm.get('heart_rate_regularity', 'N/A')}
|
| 141 |
+
- Detected Arrhythmias: {', '.join(rhythm.get('arrhythmia_types', [])) or 'None'}
|
| 142 |
+
|
| 143 |
+
ARRHYTHMIA PROBABILITIES:
|
| 144 |
+
- Normal Sinus Rhythm: {arrhythmia_probs.get('normal_rhythm', 'N/A')}
|
| 145 |
+
- Atrial Fibrillation: {arrhythmia_probs.get('atrial_fibrillation', 'N/A')}
|
| 146 |
+
- Atrial Flutter: {arrhythmia_probs.get('atrial_flutter', 'N/A')}
|
| 147 |
+
- Ventricular Tachycardia: {arrhythmia_probs.get('ventricular_tachycardia', 'N/A')}
|
| 148 |
+
- Heart Block: {arrhythmia_probs.get('heart_block', 'N/A')}
|
| 149 |
+
|
| 150 |
+
ST-SEGMENT & T-WAVE FINDINGS:
|
| 151 |
+
- ST Elevation: {derived.get('st_elevation_mm', 'None detected')}
|
| 152 |
+
- ST Depression: {derived.get('st_depression_mm', 'None detected')}
|
| 153 |
+
- T-wave Abnormalities: {', '.join(derived.get('t_wave_abnormalities', [])) or 'None'}
|
| 154 |
+
- Axis Deviation: {derived.get('axis_deviation', 'Normal')}
|
| 155 |
+
|
| 156 |
+
AI MODEL OUTPUTS:
|
| 157 |
+
{PromptTemplateLibrary._format_model_outputs(outputs)}
|
| 158 |
+
|
| 159 |
+
ANALYSIS CONFIDENCE: {overall_confidence * 100:.1f}%
|
| 160 |
+
|
| 161 |
+
INSTRUCTIONS:
|
| 162 |
+
Generate a comprehensive clinical ECG report with the following sections:
|
| 163 |
+
|
| 164 |
+
1. TECHNICAL SUMMARY
|
| 165 |
+
- Concise interpretation of rhythm and intervals
|
| 166 |
+
- Significance of any abnormal findings
|
| 167 |
+
|
| 168 |
+
2. CLINICAL SIGNIFICANCE
|
| 169 |
+
- Pathophysiological implications
|
| 170 |
+
- Risk stratification (low/moderate/high)
|
| 171 |
+
|
| 172 |
+
3. DIFFERENTIAL DIAGNOSIS
|
| 173 |
+
- Most likely diagnoses based on findings
|
| 174 |
+
- Alternative considerations
|
| 175 |
+
|
| 176 |
+
4. RECOMMENDATIONS
|
| 177 |
+
- Immediate actions required (if any)
|
| 178 |
+
- Follow-up studies or monitoring
|
| 179 |
+
- Cardiology referral if indicated
|
| 180 |
+
|
| 181 |
+
5. CONFIDENCE EXPLANATION
|
| 182 |
+
- Why the AI confidence is {overall_confidence * 100:.1f}%
|
| 183 |
+
- Which findings are most/least certain
|
| 184 |
+
- Limitations of the analysis
|
| 185 |
+
|
| 186 |
+
Use precise medical terminology. Be evidence-based. Flag any critical findings requiring immediate attention.
|
| 187 |
+
|
| 188 |
+
Generate the report now:"""
|
| 189 |
+
|
| 190 |
+
return prompt
|
| 191 |
+
|
| 192 |
+
@staticmethod
|
| 193 |
+
def _ecg_patient_template(
|
| 194 |
+
data: Dict[str, Any],
|
| 195 |
+
outputs: List[Dict[str, Any]],
|
| 196 |
+
confidence: Dict[str, float]
|
| 197 |
+
) -> str:
|
| 198 |
+
"""Patient-friendly ECG summary template"""
|
| 199 |
+
|
| 200 |
+
rhythm = data.get("rhythm_classification", {})
|
| 201 |
+
intervals = data.get("intervals", {})
|
| 202 |
+
|
| 203 |
+
prompt = f"""You are a medical AI assistant explaining ECG results to a patient in simple, clear language.
|
| 204 |
+
|
| 205 |
+
YOUR ECG RESULTS:
|
| 206 |
+
- Heart Rate: {rhythm.get('heart_rate_bpm', 'N/A')} beats per minute
|
| 207 |
+
- Heart Rhythm: {rhythm.get('primary_rhythm', 'N/A')}
|
| 208 |
+
|
| 209 |
+
WHAT THIS MEANS:
|
| 210 |
+
Generate a patient-friendly explanation that:
|
| 211 |
+
|
| 212 |
+
1. WHAT WE FOUND
|
| 213 |
+
- Explain the heart rate and rhythm in simple terms
|
| 214 |
+
- Describe any abnormalities without medical jargon
|
| 215 |
+
|
| 216 |
+
2. WHAT THIS MEANS FOR YOU
|
| 217 |
+
- Is this normal or concerning?
|
| 218 |
+
- What might be causing any abnormalities?
|
| 219 |
+
|
| 220 |
+
3. NEXT STEPS
|
| 221 |
+
- What should you do next?
|
| 222 |
+
- Do you need to see a doctor urgently?
|
| 223 |
+
- Any lifestyle changes to consider?
|
| 224 |
+
|
| 225 |
+
4. OUR CONFIDENCE
|
| 226 |
+
- How certain are we about these findings?
|
| 227 |
+
- Why you should still talk to your doctor
|
| 228 |
+
|
| 229 |
+
Use everyday language. Be reassuring when appropriate. Be clear about urgency if there are concerns.
|
| 230 |
+
|
| 231 |
+
Generate the patient explanation now:"""
|
| 232 |
+
|
| 233 |
+
return prompt
|
| 234 |
+
|
| 235 |
+
# ========================
|
| 236 |
+
# RADIOLOGY TEMPLATES
|
| 237 |
+
# ========================
|
| 238 |
+
|
| 239 |
+
@staticmethod
|
| 240 |
+
def _radiology_clinician_template(
|
| 241 |
+
data: Dict[str, Any],
|
| 242 |
+
outputs: List[Dict[str, Any]],
|
| 243 |
+
confidence: Dict[str, float]
|
| 244 |
+
) -> str:
|
| 245 |
+
"""Clinician-level radiology summary template"""
|
| 246 |
+
|
| 247 |
+
findings = data.get("findings", {})
|
| 248 |
+
metrics = data.get("metrics", {})
|
| 249 |
+
images = data.get("image_references", [])
|
| 250 |
+
|
| 251 |
+
prompt = f"""You are a radiologist AI assistant generating a comprehensive imaging report.
|
| 252 |
+
|
| 253 |
+
IMAGING STUDY DETAILS:
|
| 254 |
+
- Modality: {', '.join([img.get('modality', 'N/A') for img in images[:3]])}
|
| 255 |
+
- Body Parts: {', '.join([img.get('body_part', 'N/A') for img in images[:3]])}
|
| 256 |
+
- Study Date: {data.get('metadata', {}).get('document_date', 'N/A')}
|
| 257 |
+
|
| 258 |
+
FINDINGS:
|
| 259 |
+
{findings.get('findings_text', 'N/A')}
|
| 260 |
+
|
| 261 |
+
IMPRESSION:
|
| 262 |
+
{findings.get('impression_text', 'N/A')}
|
| 263 |
+
|
| 264 |
+
CRITICAL FINDINGS: {', '.join(findings.get('critical_findings', [])) or 'None'}
|
| 265 |
+
INCIDENTAL FINDINGS: {', '.join(findings.get('incidental_findings', [])) or 'None'}
|
| 266 |
+
|
| 267 |
+
QUANTITATIVE METRICS:
|
| 268 |
+
- Organ Volumes: {metrics.get('organ_volumes', {})}
|
| 269 |
+
- Lesion Measurements: {len(metrics.get('lesion_measurements', []))} lesions measured
|
| 270 |
+
|
| 271 |
+
AI MODEL ANALYSIS:
|
| 272 |
+
{PromptTemplateLibrary._format_model_outputs(outputs)}
|
| 273 |
+
|
| 274 |
+
ANALYSIS CONFIDENCE: {confidence.get('overall_confidence', 0.0) * 100:.1f}%
|
| 275 |
+
|
| 276 |
+
Generate a structured radiology report with:
|
| 277 |
+
|
| 278 |
+
1. TECHNIQUE & COMPARISON
|
| 279 |
+
2. FINDINGS (organized by anatomical region)
|
| 280 |
+
3. IMPRESSION
|
| 281 |
+
4. RECOMMENDATIONS
|
| 282 |
+
5. CONFIDENCE ASSESSMENT
|
| 283 |
+
|
| 284 |
+
Use standard radiology terminology (BI-RADS, Lung-RADS, etc. if applicable).
|
| 285 |
+
|
| 286 |
+
Generate the report now:"""
|
| 287 |
+
|
| 288 |
+
return prompt
|
| 289 |
+
|
| 290 |
+
@staticmethod
|
| 291 |
+
def _radiology_patient_template(
|
| 292 |
+
data: Dict[str, Any],
|
| 293 |
+
outputs: List[Dict[str, Any]],
|
| 294 |
+
confidence: Dict[str, float]
|
| 295 |
+
) -> str:
|
| 296 |
+
"""Patient-friendly radiology summary template"""
|
| 297 |
+
|
| 298 |
+
findings = data.get("findings", {})
|
| 299 |
+
images = data.get("image_references", [])
|
| 300 |
+
|
| 301 |
+
prompt = f"""You are explaining imaging results to a patient in clear, simple language.
|
| 302 |
+
|
| 303 |
+
YOUR IMAGING STUDY:
|
| 304 |
+
- Type of Scan: {', '.join([img.get('modality', 'N/A') for img in images[:3]])}
|
| 305 |
+
- Body Area: {', '.join([img.get('body_part', 'N/A') for img in images[:3]])}
|
| 306 |
+
|
| 307 |
+
Generate a patient-friendly explanation:
|
| 308 |
+
|
| 309 |
+
1. WHAT THE SCAN SHOWED
|
| 310 |
+
- Main findings in simple terms
|
| 311 |
+
- Any areas of concern
|
| 312 |
+
|
| 313 |
+
2. WHAT THIS MEANS
|
| 314 |
+
- Are the findings normal or abnormal?
|
| 315 |
+
- What conditions might this suggest?
|
| 316 |
+
|
| 317 |
+
3. NEXT STEPS
|
| 318 |
+
- Do you need additional tests?
|
| 319 |
+
- Should you see a specialist?
|
| 320 |
+
- Timeline for follow-up
|
| 321 |
+
|
| 322 |
+
4. QUESTIONS TO ASK YOUR DOCTOR
|
| 323 |
+
- List 3-4 relevant questions
|
| 324 |
+
|
| 325 |
+
Use everyday language. Explain medical terms when necessary. Be clear about urgency.
|
| 326 |
+
|
| 327 |
+
Generate the patient explanation now:"""
|
| 328 |
+
|
| 329 |
+
return prompt
|
| 330 |
+
|
| 331 |
+
# ========================
|
| 332 |
+
# LABORATORY TEMPLATES
|
| 333 |
+
# ========================
|
| 334 |
+
|
| 335 |
+
@staticmethod
|
| 336 |
+
def _laboratory_clinician_template(
|
| 337 |
+
data: Dict[str, Any],
|
| 338 |
+
outputs: List[Dict[str, Any]],
|
| 339 |
+
confidence: Dict[str, float]
|
| 340 |
+
) -> str:
|
| 341 |
+
"""Clinician-level laboratory results template"""
|
| 342 |
+
|
| 343 |
+
tests = data.get("tests", [])
|
| 344 |
+
abnormal_count = data.get("abnormal_count", 0)
|
| 345 |
+
critical_values = data.get("critical_values", [])
|
| 346 |
+
|
| 347 |
+
test_summary = "\n".join([
|
| 348 |
+
f"- {test.get('test_name', 'N/A')}: {test.get('value', 'N/A')} {test.get('unit', '')} "
|
| 349 |
+
f"(Ref: {test.get('reference_range_low', 'N/A')}-{test.get('reference_range_high', 'N/A')}) "
|
| 350 |
+
f"{test.get('flags', [])}"
|
| 351 |
+
for test in tests[:20] # Limit to 20 tests
|
| 352 |
+
])
|
| 353 |
+
|
| 354 |
+
prompt = f"""You are a clinical laboratory AI assistant generating a comprehensive lab results analysis.
|
| 355 |
+
|
| 356 |
+
LABORATORY PANEL:
|
| 357 |
+
- Panel Type: {data.get('panel_name', 'General Laboratory Panel')}
|
| 358 |
+
- Collection Date: {data.get('collection_date', 'N/A')}
|
| 359 |
+
- Total Tests: {len(tests)}
|
| 360 |
+
- Abnormal Results: {abnormal_count}
|
| 361 |
+
- Critical Values: {len(critical_values)}
|
| 362 |
+
|
| 363 |
+
TEST RESULTS:
|
| 364 |
+
{test_summary}
|
| 365 |
+
|
| 366 |
+
CRITICAL VALUES: {', '.join(critical_values) or 'None'}
|
| 367 |
+
|
| 368 |
+
AI MODEL ANALYSIS:
|
| 369 |
+
{PromptTemplateLibrary._format_model_outputs(outputs)}
|
| 370 |
+
|
| 371 |
+
ANALYSIS CONFIDENCE: {confidence.get('overall_confidence', 0.0) * 100:.1f}%
|
| 372 |
+
|
| 373 |
+
Generate a comprehensive laboratory interpretation with:
|
| 374 |
+
|
| 375 |
+
1. SUMMARY OF KEY FINDINGS
|
| 376 |
+
- Normal vs abnormal results
|
| 377 |
+
- Critical values requiring immediate attention
|
| 378 |
+
|
| 379 |
+
2. CLINICAL CORRELATION
|
| 380 |
+
- Pattern recognition (e.g., renal dysfunction, electrolyte imbalance)
|
| 381 |
+
- Physiological significance
|
| 382 |
+
|
| 383 |
+
3. DIFFERENTIAL DIAGNOSIS
|
| 384 |
+
- Most likely conditions based on lab pattern
|
| 385 |
+
|
| 386 |
+
4. RECOMMENDATIONS
|
| 387 |
+
- Immediate interventions for critical values
|
| 388 |
+
- Additional testing needed
|
| 389 |
+
- Follow-up timeline
|
| 390 |
+
|
| 391 |
+
5. CONFIDENCE ASSESSMENT
|
| 392 |
+
- Reliability of each test result
|
| 393 |
+
- Need for repeat testing
|
| 394 |
+
|
| 395 |
+
Generate the interpretation now:"""
|
| 396 |
+
|
| 397 |
+
return prompt
|
| 398 |
+
|
| 399 |
+
@staticmethod
|
| 400 |
+
def _laboratory_patient_template(
|
| 401 |
+
data: Dict[str, Any],
|
| 402 |
+
outputs: List[Dict[str, Any]],
|
| 403 |
+
confidence: Dict[str, float]
|
| 404 |
+
) -> str:
|
| 405 |
+
"""Patient-friendly laboratory results template"""
|
| 406 |
+
|
| 407 |
+
tests = data.get("tests", [])
|
| 408 |
+
abnormal_count = data.get("abnormal_count", 0)
|
| 409 |
+
|
| 410 |
+
prompt = f"""You are explaining laboratory test results to a patient in simple language.
|
| 411 |
+
|
| 412 |
+
YOUR LAB RESULTS:
|
| 413 |
+
- Total Tests: {len(tests)}
|
| 414 |
+
- Abnormal Results: {abnormal_count}
|
| 415 |
+
|
| 416 |
+
Generate a patient-friendly explanation:
|
| 417 |
+
|
| 418 |
+
1. OVERVIEW
|
| 419 |
+
- What tests were done and why
|
| 420 |
+
- Overall picture (mostly normal, some concerns, etc.)
|
| 421 |
+
|
| 422 |
+
2. KEY FINDINGS
|
| 423 |
+
- Which results are normal
|
| 424 |
+
- Which results are outside the normal range
|
| 425 |
+
- What each abnormal result means in simple terms
|
| 426 |
+
|
| 427 |
+
3. WHAT THIS MEANS FOR YOUR HEALTH
|
| 428 |
+
- Are these results concerning?
|
| 429 |
+
- What conditions might they suggest?
|
| 430 |
+
|
| 431 |
+
4. NEXT STEPS
|
| 432 |
+
- Do you need to see your doctor urgently?
|
| 433 |
+
- Lifestyle changes that might help
|
| 434 |
+
- Additional tests that might be needed
|
| 435 |
+
|
| 436 |
+
5. IMPORTANT NOTES
|
| 437 |
+
- Lab values can vary based on many factors
|
| 438 |
+
- Always discuss results with your doctor
|
| 439 |
+
|
| 440 |
+
Use everyday language. Explain abbreviations. Be clear about urgency.
|
| 441 |
+
|
| 442 |
+
Generate the patient explanation now:"""
|
| 443 |
+
|
| 444 |
+
return prompt
|
| 445 |
+
|
| 446 |
+
# ========================
|
| 447 |
+
# CLINICAL NOTES TEMPLATES
|
| 448 |
+
# ========================
|
| 449 |
+
|
| 450 |
+
@staticmethod
|
| 451 |
+
def _clinical_notes_clinician_template(
|
| 452 |
+
data: Dict[str, Any],
|
| 453 |
+
outputs: List[Dict[str, Any]],
|
| 454 |
+
confidence: Dict[str, float]
|
| 455 |
+
) -> str:
|
| 456 |
+
"""Clinician-level clinical notes summary template"""
|
| 457 |
+
|
| 458 |
+
sections = data.get("sections", [])
|
| 459 |
+
entities = data.get("entities", [])
|
| 460 |
+
diagnoses = data.get("diagnoses", [])
|
| 461 |
+
medications = data.get("medications", [])
|
| 462 |
+
|
| 463 |
+
sections_summary = "\n".join([
|
| 464 |
+
f"- {section.get('section_type', 'N/A')}: {section.get('content', 'N/A')[:200]}..."
|
| 465 |
+
for section in sections[:10]
|
| 466 |
+
])
|
| 467 |
+
|
| 468 |
+
prompt = f"""You are a clinical documentation AI assistant synthesizing medical notes.
|
| 469 |
+
|
| 470 |
+
NOTE TYPE: {data.get('note_type', 'Clinical Documentation')}
|
| 471 |
+
DOCUMENTATION DATE: {data.get('metadata', {}).get('document_date', 'N/A')}
|
| 472 |
+
|
| 473 |
+
CLINICAL SECTIONS:
|
| 474 |
+
{sections_summary}
|
| 475 |
+
|
| 476 |
+
EXTRACTED ENTITIES:
|
| 477 |
+
- Diagnoses: {', '.join(diagnoses[:10]) or 'None identified'}
|
| 478 |
+
- Medications: {', '.join(medications[:10]) or 'None identified'}
|
| 479 |
+
|
| 480 |
+
AI MODEL ANALYSIS:
|
| 481 |
+
{PromptTemplateLibrary._format_model_outputs(outputs)}
|
| 482 |
+
|
| 483 |
+
ANALYSIS CONFIDENCE: {confidence.get('overall_confidence', 0.0) * 100:.1f}%
|
| 484 |
+
|
| 485 |
+
Generate a comprehensive clinical synthesis with:
|
| 486 |
+
|
| 487 |
+
1. CLINICAL SUMMARY
|
| 488 |
+
- Chief complaint and HPI synthesis
|
| 489 |
+
- Pertinent positives and negatives
|
| 490 |
+
|
| 491 |
+
2. ASSESSMENT
|
| 492 |
+
- Problem list with prioritization
|
| 493 |
+
- Clinical reasoning
|
| 494 |
+
|
| 495 |
+
3. PLAN
|
| 496 |
+
- Management for each problem
|
| 497 |
+
- Medications and interventions
|
| 498 |
+
- Follow-up and monitoring
|
| 499 |
+
|
| 500 |
+
4. DOCUMENTATION QUALITY
|
| 501 |
+
- Completeness assessment
|
| 502 |
+
- Missing information
|
| 503 |
+
|
| 504 |
+
5. CONFIDENCE ASSESSMENT
|
| 505 |
+
|
| 506 |
+
Generate the clinical synthesis now:"""
|
| 507 |
+
|
| 508 |
+
return prompt
|
| 509 |
+
|
| 510 |
+
@staticmethod
|
| 511 |
+
def _clinical_notes_patient_template(
|
| 512 |
+
data: Dict[str, Any],
|
| 513 |
+
outputs: List[Dict[str, Any]],
|
| 514 |
+
confidence: Dict[str, float]
|
| 515 |
+
) -> str:
|
| 516 |
+
"""Patient-friendly clinical notes summary template"""
|
| 517 |
+
|
| 518 |
+
diagnoses = data.get("diagnoses", [])
|
| 519 |
+
medications = data.get("medications", [])
|
| 520 |
+
|
| 521 |
+
prompt = f"""You are explaining a clinical visit summary to a patient in clear, simple language.
|
| 522 |
+
|
| 523 |
+
Generate a patient-friendly visit summary:
|
| 524 |
+
|
| 525 |
+
1. REASON FOR YOUR VISIT
|
| 526 |
+
- Why you came to see the doctor
|
| 527 |
+
|
| 528 |
+
2. WHAT THE DOCTOR FOUND
|
| 529 |
+
- Key findings from examination
|
| 530 |
+
- Test results discussed
|
| 531 |
+
|
| 532 |
+
3. YOUR DIAGNOSES
|
| 533 |
+
- {', '.join(diagnoses[:5]) if diagnoses else 'To be discussed with your doctor'}
|
| 534 |
+
- What each diagnosis means in simple terms
|
| 535 |
+
|
| 536 |
+
4. YOUR TREATMENT PLAN
|
| 537 |
+
- Medications prescribed
|
| 538 |
+
- Other treatments or therapies
|
| 539 |
+
|
| 540 |
+
5. WHAT YOU NEED TO DO
|
| 541 |
+
- Follow-up appointments
|
| 542 |
+
- Tests or procedures needed
|
| 543 |
+
- Lifestyle changes
|
| 544 |
+
- Warning signs to watch for
|
| 545 |
+
|
| 546 |
+
6. QUESTIONS FOR YOUR DOCTOR
|
| 547 |
+
- List important questions to ask
|
| 548 |
+
|
| 549 |
+
Use everyday language. Explain medical terms. Organize by priority.
|
| 550 |
+
|
| 551 |
+
Generate the patient summary now:"""
|
| 552 |
+
|
| 553 |
+
return prompt
|
| 554 |
+
|
| 555 |
+
# ========================
|
| 556 |
+
# GENERAL TEMPLATES
|
| 557 |
+
# ========================
|
| 558 |
+
|
| 559 |
+
@staticmethod
|
| 560 |
+
def _general_clinician_template(
|
| 561 |
+
data: Dict[str, Any],
|
| 562 |
+
outputs: List[Dict[str, Any]],
|
| 563 |
+
confidence: Dict[str, float]
|
| 564 |
+
) -> str:
|
| 565 |
+
"""General clinician-level summary template"""
|
| 566 |
+
|
| 567 |
+
prompt = f"""You are a medical AI assistant generating a comprehensive clinical summary.
|
| 568 |
+
|
| 569 |
+
DOCUMENT TYPE: {data.get('metadata', {}).get('source_type', 'Medical Document')}
|
| 570 |
+
DOCUMENT DATE: {data.get('metadata', {}).get('document_date', 'N/A')}
|
| 571 |
+
|
| 572 |
+
AI MODEL ANALYSIS:
|
| 573 |
+
{PromptTemplateLibrary._format_model_outputs(outputs)}
|
| 574 |
+
|
| 575 |
+
ANALYSIS CONFIDENCE: {confidence.get('overall_confidence', 0.0) * 100:.1f}%
|
| 576 |
+
|
| 577 |
+
Generate a structured medical summary with:
|
| 578 |
+
1. KEY FINDINGS
|
| 579 |
+
2. CLINICAL SIGNIFICANCE
|
| 580 |
+
3. RECOMMENDATIONS
|
| 581 |
+
4. CONFIDENCE ASSESSMENT
|
| 582 |
+
|
| 583 |
+
Use appropriate medical terminology.
|
| 584 |
+
|
| 585 |
+
Generate the summary now:"""
|
| 586 |
+
|
| 587 |
+
return prompt
|
| 588 |
+
|
| 589 |
+
@staticmethod
|
| 590 |
+
def _general_patient_template(
|
| 591 |
+
data: Dict[str, Any],
|
| 592 |
+
outputs: List[Dict[str, Any]],
|
| 593 |
+
confidence: Dict[str, float]
|
| 594 |
+
) -> str:
|
| 595 |
+
"""General patient-friendly summary template"""
|
| 596 |
+
|
| 597 |
+
prompt = f"""You are explaining medical information to a patient in simple, clear language.
|
| 598 |
+
|
| 599 |
+
Generate a patient-friendly explanation:
|
| 600 |
+
1. WHAT WE FOUND
|
| 601 |
+
2. WHAT THIS MEANS FOR YOU
|
| 602 |
+
3. NEXT STEPS
|
| 603 |
+
4. QUESTIONS TO ASK YOUR DOCTOR
|
| 604 |
+
|
| 605 |
+
Use everyday language. Be clear and reassuring when appropriate.
|
| 606 |
+
|
| 607 |
+
Generate the explanation now:"""
|
| 608 |
+
|
| 609 |
+
return prompt
|
| 610 |
+
|
| 611 |
+
# ========================
|
| 612 |
+
# MULTI-MODAL SYNTHESIS
|
| 613 |
+
# ========================
|
| 614 |
+
|
| 615 |
+
@staticmethod
|
| 616 |
+
def get_multi_modal_synthesis_template(
|
| 617 |
+
modalities: List[str],
|
| 618 |
+
all_data: Dict[str, Dict[str, Any]],
|
| 619 |
+
confidence_scores: Dict[str, float]
|
| 620 |
+
) -> str:
|
| 621 |
+
"""
|
| 622 |
+
Generate prompt for multi-modal clinical synthesis
|
| 623 |
+
Combines multiple document types into unified summary
|
| 624 |
+
"""
|
| 625 |
+
|
| 626 |
+
modality_summaries = []
|
| 627 |
+
for modality in modalities:
|
| 628 |
+
data = all_data.get(modality, {})
|
| 629 |
+
modality_summaries.append(f"- {modality.upper()}: Available with {confidence_scores.get(modality, 0.0)*100:.1f}% confidence")
|
| 630 |
+
|
| 631 |
+
prompt = f"""You are a medical AI assistant synthesizing multiple medical documents into a comprehensive clinical picture.
|
| 632 |
+
|
| 633 |
+
AVAILABLE DOCUMENTS:
|
| 634 |
+
{chr(10).join(modality_summaries)}
|
| 635 |
+
|
| 636 |
+
TASK:
|
| 637 |
+
Generate a unified clinical summary that:
|
| 638 |
+
|
| 639 |
+
1. INTEGRATED CLINICAL PICTURE
|
| 640 |
+
- Synthesize findings across all modalities
|
| 641 |
+
- Identify consistent patterns
|
| 642 |
+
- Flag contradictions or discrepancies
|
| 643 |
+
|
| 644 |
+
2. TIMELINE CORRELATION
|
| 645 |
+
- How findings relate temporally
|
| 646 |
+
- Disease progression or improvement
|
| 647 |
+
|
| 648 |
+
3. COMPREHENSIVE ASSESSMENT
|
| 649 |
+
- Overall patient status
|
| 650 |
+
- Risk stratification
|
| 651 |
+
|
| 652 |
+
4. COORDINATED CARE PLAN
|
| 653 |
+
- Unified recommendations
|
| 654 |
+
- Priority actions
|
| 655 |
+
- Specialist referrals
|
| 656 |
+
|
| 657 |
+
5. CONFIDENCE SYNTHESIS
|
| 658 |
+
- Overall reliability of the integrated analysis
|
| 659 |
+
- Areas needing additional investigation
|
| 660 |
+
|
| 661 |
+
Generate the integrated clinical synthesis now:"""
|
| 662 |
+
|
| 663 |
+
return prompt
|
| 664 |
+
|
| 665 |
+
# ========================
|
| 666 |
+
# UTILITY METHODS
|
| 667 |
+
# ========================
|
| 668 |
+
|
| 669 |
+
@staticmethod
|
| 670 |
+
def _format_model_outputs(outputs: List[Dict[str, Any]]) -> str:
|
| 671 |
+
"""Format model outputs for inclusion in prompts"""
|
| 672 |
+
if not outputs:
|
| 673 |
+
return "No specialized model outputs available"
|
| 674 |
+
|
| 675 |
+
formatted = []
|
| 676 |
+
for idx, output in enumerate(outputs[:5], 1): # Limit to top 5
|
| 677 |
+
model_name = output.get("model_name", "Unknown Model")
|
| 678 |
+
domain = output.get("domain", "general")
|
| 679 |
+
result = output.get("result", {})
|
| 680 |
+
|
| 681 |
+
# Extract key information from result
|
| 682 |
+
if isinstance(result, dict):
|
| 683 |
+
confidence = result.get("confidence", 0.0)
|
| 684 |
+
summary = result.get("summary", result.get("analysis", "Analysis completed"))[:200]
|
| 685 |
+
formatted.append(f"{idx}. {model_name} ({domain}): {summary}... [Confidence: {confidence*100:.1f}%]")
|
| 686 |
+
else:
|
| 687 |
+
formatted.append(f"{idx}. {model_name} ({domain}): {str(result)[:200]}...")
|
| 688 |
+
|
| 689 |
+
return "\n".join(formatted)
|
| 690 |
+
|
| 691 |
+
@staticmethod
|
| 692 |
+
def get_confidence_explanation_template(
|
| 693 |
+
confidence_scores: Dict[str, float],
|
| 694 |
+
modality: str
|
| 695 |
+
) -> str:
|
| 696 |
+
"""Generate prompt for explaining confidence scores"""
|
| 697 |
+
|
| 698 |
+
overall = confidence_scores.get("overall_confidence", 0.0)
|
| 699 |
+
extraction = confidence_scores.get("extraction_confidence", 0.0)
|
| 700 |
+
model = confidence_scores.get("model_confidence", 0.0)
|
| 701 |
+
quality = confidence_scores.get("data_quality", 0.0)
|
| 702 |
+
|
| 703 |
+
if overall >= 0.85:
|
| 704 |
+
threshold = "AUTO-APPROVED (≥85%)"
|
| 705 |
+
elif overall >= 0.60:
|
| 706 |
+
threshold = "REQUIRES REVIEW (60-85%)"
|
| 707 |
+
else:
|
| 708 |
+
threshold = "MANUAL REVIEW REQUIRED (<60%)"
|
| 709 |
+
|
| 710 |
+
prompt = f"""Explain the confidence scores for this {modality} analysis to a clinician:
|
| 711 |
+
|
| 712 |
+
CONFIDENCE BREAKDOWN:
|
| 713 |
+
- Overall Confidence: {overall*100:.1f}% [{threshold}]
|
| 714 |
+
- Data Extraction: {extraction*100:.1f}%
|
| 715 |
+
- Model Analysis: {model*100:.1f}%
|
| 716 |
+
- Data Quality: {quality*100:.1f}%
|
| 717 |
+
|
| 718 |
+
Generate a brief explanation that:
|
| 719 |
+
1. Why this confidence level?
|
| 720 |
+
2. What factors contributed to the score?
|
| 721 |
+
3. What should the clinician be aware of?
|
| 722 |
+
4. Is human review recommended?
|
| 723 |
+
|
| 724 |
+
Be concise and practical.
|
| 725 |
+
|
| 726 |
+
Generate the explanation now:"""
|
| 727 |
+
|
| 728 |
+
return prompt
|