Upload config-docker.yml

config-docker.yml

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+version: "0.8.0"
+
+grobidHome: /opt/grobid/grobid-home
+
+# entity-fishing server information for performing entity disambiguation
+# for https, indicate 443 as port
+entityFishingHost:
+entityFishingPort:
+#entityFishingHost: localhost
+#entityFishingPort: 8090
+
+corpusPath: resources/dataset/
+tmpPath: tmp/
+
+# path to Pub2TEI repository as available at https://github.com/kermitt2/Pub2TEI
+pub2teiPath: "../../Pub2TEI/"
+
+# if true we use binary classifiers for the contexts, otherwise use a single multi-label classifier
+# binary classifiers perform better, but havier to use
+useBinaryContextClassifiers: true
+
+models:
+  - name: "software"
+    engine: "wapiti"
+    #engine: "delft"
+    wapiti:
+      # wapiti training parameters, only considered when wapiti is used as engine for the model, 
+      # these parameters are be used at training time only
+      epsilon: 0.00001
+      window: 30
+      nbMaxIterations: 1500
+    delft:
+      # deep learning parameters
+      #architecture: "BidLSTM_CRF"
+      #useELMo: false
+      #embeddings_name: "glove-840B"
+      architecture: "BERT"
+      transformer: "allenai/scibert_scivocab_cased"
+      #transformer: "michiyasunaga/LinkBERT-basecased"
+
+  - name: "software-type"
+    engine: "wapiti"
+    #engine: "delft"
+    wapiti:
+      # wapiti training parameters, only considered when wapiti is used as engine for the model, 
+      # these parameters are be used at training time only
+      epsilon: 0.00001
+      window: 30
+      nbMaxIterations: 1500
+    delft:
+      # deep learning parameters
+      #architecture: "BidLSTM_CRF"
+      #useELMo: false
+      #embeddings_name: "glove-840B"
+      architecture: "BERT_CRF"
+      transformer: "michiyasunaga/LinkBERT-basecased"
+
+  - name: "context"
+    # multi-label classifier for the context 
+    engine: "delft"
+    delft:
+      #architecture: "gru"
+      #embeddings_name: "glove-840B"
+      architecture: "bert"
+      transformer: "michiyasunaga/LinkBERT-basecased"
+
+  - name: "context_used"
+    # binary classifier to predict if the context of the mention correspond to a usage of the software 
+    engine: "delft"
+    delft:
+      #architecture: "gru"
+      #embeddings_name: "glove-840B"
+      architecture: "bert"
+      transformer: "michiyasunaga/LinkBERT-basecased"
+
+  - name: "context_creation"
+    # binary classifier to predict if the context of the mention correspond to a creation of the software 
+    engine: "delft"
+    delft:
+      #architecture: "gru"
+      #embeddings_name: "glove-840B"
+      architecture: "bert"
+      transformer: "michiyasunaga/LinkBERT-basecased"
+
+  - name: "context_shared"
+    # binary classifier to predict if the context of the mention correspond to a sharing of the software 
+    engine: "delft"
+    delft:
+      #architecture: "gru"
+      #embeddings_name: "glove-840B"
+      architecture: "bert"
+      transformer: "michiyasunaga/LinkBERT-basecased"
+
+# Limit the maximum number of requests
+maxParallelRequests: 0
+
+# CORS configuration for the web API service
+corsAllowedOrigins: "*"
+corsAllowedMethods: "OPTIONS,GET,PUT,POST,DELETE,HEAD"
+corsAllowedHeaders: "X-Requested-With,Content-Type,Accept,Origin"
+
+server:
+  type: custom
+  idleTimeout: 120 seconds
+  applicationConnectors:
+    - type: http
+      port: 8060
+  adminConnectors:
+    - type: http
+      port: 8061
+  registerDefaultExceptionMappers: false
+  maxThreads: 2048
+  maxQueuedRequests: 2048
+  acceptQueueSize: 2048
+  # change the following for having all http requests logged
+  requestLog:
+    appenders: []
+
+# these logging settings apply to the service usage mode
+logging:
+  level: INFO
+  loggers:
+    org.apache.pdfbox.pdmodel.font.PDSimpleFont: "OFF"
+    org.glassfish.jersey.internal: "OFF"
+    com.squarespace.jersey2.guice.JerseyGuiceUtils: "OFF"
+  appenders:
+    - type: console
+      threshold: WARN
+      timeZone: UTC