Spaces:
Sleeping
Sleeping
Commit
·
6fa1fee
1
Parent(s):
6e48304
save new rule integrated with cdss
Browse files- cdss.py +161 -124
- rules.py +10 -10
- rules_visualization.svg +12 -0
- validator.py +152 -0
- visualizer.py +0 -184
cdss.py
CHANGED
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@@ -307,12 +307,16 @@ def state_to_panels(state: PatientState) -> Tuple:
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)
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def inject_scenario(
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ps = SCENARIOS[tag]()
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if historic_text:
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historic_text += f"\n[{datetime.now().strftime('%H:%M:%S')}] Scenario Injected: {ps.scenario}"
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else:
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historic_text =
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return process_and_update(ps, history_df, historic_text, cdss_on)
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@@ -349,7 +353,7 @@ def manual_edit(
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def tick_timer(cdss_on, current_state, history_df, historic_text):
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if not current_state:
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return [gr.update()] *
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ps = PatientState(**current_state)
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ps.vitals = Vitals(**ps.vitals)
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ps = drift_vitals(ps)
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@@ -383,9 +387,8 @@ def countdown_tick(last_tick_ts: float):
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import json
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import ast
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import graphviz
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def parse_rules(
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with open("rules.py", "r") as f:
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tree = ast.parse(f.read())
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@@ -394,92 +397,132 @@ def parse_rules(return_json=False):
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for node in ast.walk(tree):
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if isinstance(node, ast.FunctionDef) and node.name == "rule_based_cdss":
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for body_item in node.body:
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if
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if patient_type in rules:
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for rule_node in body_item.body:
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if isinstance(rule_node, ast.If):
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conditions = ast.unparse(rule_node.test)
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alert = ""
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for item in rule_node.body:
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if (
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isinstance(item
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hasattr(item.value.func
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item.value.func.value
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item.value.func.
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with open("rules.py", "r") as f:
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tree = ast.parse(f.read())
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# Find the function definition
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for node in ast.walk(tree):
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if isinstance(node, ast.FunctionDef) and node.name == "rule_based_cdss":
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# Clear the existing body
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node.body = []
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-
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# Add the initial variable assignments
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node.body.append(ast.parse("v = state.vitals").body[0])
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node.body.append(ast.parse("labs = state.labs").body[0])
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node.body.append(ast.parse("alerts = []").body[0])
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# Add the rules
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for patient_type, rule_list in rules.items():
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if_patient_type_body = []
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for rule in rule_list:
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if_patient_type_body.append(if_rule)
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# Unparse the modified AST
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new_code = ast.unparse(tree)
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# Write the new code back to the file
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with open("rules.py", "w") as f:
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f.write(new_code)
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return "Rules saved successfully."
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def generate_and_display_rules():
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dot = parse_rules()
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dot.render('rules_visualization', format='svg', cleanup=True)
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return 'rules_visualization.svg'
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# --- Build UI ---
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with gr.Blocks(
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@@ -507,67 +550,57 @@ with gr.Blocks(
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temp_plot = gr.Plot()
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with gr.Tab("SpO₂"):
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spo2_plot = gr.Plot()
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with gr.Row():
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with gr.Column(scale=2):
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with gr.Accordion("Inject New Scenario (resets chart)", open=True):
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with gr.Row():
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btn_A0 = gr.Button("A0: Normal", elem_classes="small-btn")
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btn_A1 = gr.Button("A1: PPH", elem_classes="small-btn")
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btn_A2 = gr.Button("A2: Preeklampsia", elem_classes="small-btn")
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btn_A3 = gr.Button("A3: Sepsis", elem_classes="small-btn")
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with gr.Row():
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btn_B1 = gr.Button("B1: Prematuritas", elem_classes="small-btn")
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btn_B2 = gr.Button("B2: Asfiksia", elem_classes="small-btn")
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btn_B3 = gr.Button("B3: Sepsis", elem_classes="small-btn")
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with gr.Row():
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btn_C1 = gr.Button("C1: Bedah Komplikasi", elem_classes="small-btn")
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btn_C2 = gr.Button(
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"C2: Infeksi Pasca-Bedah", elem_classes="small-btn"
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)
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btn_C3 = gr.Button("C3: Kanker", elem_classes="small-btn")
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notes = gr.Textbox(label="Catatan Klinis", lines=2)
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labs_text = gr.Textbox(label="Lab (dict or text)", value="{}")
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labs_show = gr.Textbox(label="Labs (Parsed)", interactive=False)
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with gr.Column(scale=1):
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with gr.Group():
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patient_type_radio = gr.Radio(
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["Mother", "Neonate", "Gyn"], label="Patient Type", value="Mother"
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)
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sbp = gr.Number(label="SBP")
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dbp = gr.Number(label="DBP")
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hr = gr.Number(label="HR")
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rr = gr.Number(label="RR")
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temp_c = gr.Number(label="Temp (°C)")
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spo2 = gr.Number(label="SpO₂ (%)")
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apply_manual = gr.Button("Apply Manual Edits", variant="secondary")
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with gr.Row():
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csv_file = gr.File(label="Load CSV to Graph")
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df_view = gr.Dataframe(label="History Table", wrap=True, interactive=False)
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cdss_toggle = gr.Checkbox(value=False, label="With CDSS (Gemini)")
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scenario_lbl = gr.Textbox(label="Active Scenario", interactive=False)
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countdown_lbl = gr.Label()
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historic_box = gr.Textbox(label="Historic Text", lines=12, interactive=False)
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with gr.TabItem("Rule Visualizer"):
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gr.Markdown("## CDSS Rule Visualizer and Editor")
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with gr.Row():
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with gr.Column():
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gr.Markdown("### Current Rules Visualization")
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rules_display = gr.Image(interactive=False)
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with gr.Column():
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gr.Markdown("### Edit Rules (JSON)")
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rules_editor = gr.Textbox(lines=20, label="Edit Rules in JSON format")
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save_button = gr.Button("Save Rules")
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def update_editor_and_rules():
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return generate_and_display_rules(), json.dumps(parse_rules(return_json=True), indent=2)
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demo.load(update_editor_and_rules, None, [rules_display, rules_editor])
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save_button.click(save_rules, inputs=rules_editor, outputs=gr.Textbox()).then(
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update_editor_and_rules, None, [rules_display, rules_editor]
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)
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with gr.Row():
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with gr.Column(scale=2):
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btn_C3,
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],
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btn.click(
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csv_outputs = [history_df, df_view, bp_plot, hr_plot, rr_plot, temp_plot, spo2_plot]
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csv_file.change(load_csv, [csv_file, history_df], csv_outputs)
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)
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def inject_scenario(
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tag: str, cdss_on: bool, history_df: pd.DataFrame, historic_text: str
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):
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ps = SCENARIOS[tag]()
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if historic_text: # Add a newline if text already exists
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historic_text += f"\n[{datetime.now().strftime('%H:%M:%S')}] Scenario Injected: {ps.scenario}"
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else:
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historic_text = (
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f"[{datetime.now().strftime('%H:%M:%S')}] Scenario Injected: {ps.scenario}"
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)
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return process_and_update(ps, history_df, historic_text, cdss_on)
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def tick_timer(cdss_on, current_state, history_df, historic_text):
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if not current_state:
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return [gr.update()] * 22
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ps = PatientState(**current_state)
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ps.vitals = Vitals(**ps.vitals)
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ps = drift_vitals(ps)
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import json
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import ast
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def parse_rules():
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with open("rules.py", "r") as f:
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tree = ast.parse(f.read())
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for node in ast.walk(tree):
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if isinstance(node, ast.FunctionDef) and node.name == "rule_based_cdss":
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for body_item in node.body:
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if (
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isinstance(body_item, ast.If)
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and isinstance(body_item.test, ast.Compare)
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and isinstance(body_item.test.left, ast.Attribute)
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and isinstance(body_item.test.left.value, ast.Name)
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and body_item.test.left.value.id == "state"
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and body_item.test.left.attr == "patient_type"
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and isinstance(body_item.test.ops[0], ast.Eq)
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and isinstance(body_item.test.comparators[0], ast.Constant)
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):
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patient_type = body_item.test.comparators[0].value
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if patient_type in rules:
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for rule_node in body_item.body:
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if isinstance(rule_node, ast.If):
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conditions = ast.unparse(rule_node.test)
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alert = ""
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for item in rule_node.body:
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if (
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isinstance(item, ast.Expr)
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and isinstance(item.value, ast.Call)
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and hasattr(item.value.func, "value")
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and hasattr(item.value.func.value, "id")
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and item.value.func.value.id == "alerts"
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and item.value.func.attr == "append"
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and isinstance(item.value.args[0], ast.Constant)
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):
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alert = item.value.args[0].value
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rules[patient_type].append(
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{"conditions": conditions, "alert": alert}
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)
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return rules
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def rules_to_dataframes(rules):
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dataframes = {}
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for patient_type, rules_list in rules.items():
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data = {"Conditions": [], "Alert": []}
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for rule in rules_list:
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data["Conditions"].append(rule["conditions"])
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data["Alert"].append(rule["alert"])
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df = pd.DataFrame(data)
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dataframes[patient_type] = df
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return dataframes
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def dataframes_to_rules(dfs):
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rules = {"Mother": [], "Neonate": [], "Gyn": []}
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for patient_type, df in dfs.items():
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if df is not None:
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for index, row in df.iterrows():
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if row["Conditions"] and row["Alert"]:
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rules[patient_type].append(
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{"conditions": row["Conditions"], "alert": row["Alert"]}
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)
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return rules
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def add_row(df):
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if df is None:
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df = pd.DataFrame(columns=["Conditions", "Alert"])
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df.loc[len(df)] = ["", ""]
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return df
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def save_rules(df_mother, df_neonate, df_gyn):
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dfs = {"Mother": df_mother, "Neonate": df_neonate, "Gyn": df_gyn}
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for patient_type, df in dfs.items():
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if not isinstance(df, pd.DataFrame):
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dfs[patient_type] = pd.DataFrame(df, columns=["Conditions", "Alert"])
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rules = dataframes_to_rules(dfs)
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with open("rules.py", "r") as f:
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tree = ast.parse(f.read())
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for node in ast.walk(tree):
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if isinstance(node, ast.FunctionDef) and node.name == "rule_based_cdss":
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node.body = []
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node.body.append(ast.parse("v = state.vitals").body[0])
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node.body.append(ast.parse("labs = state.labs").body[0])
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node.body.append(ast.parse("alerts = []").body[0])
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for patient_type, rule_list in rules.items():
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if_patient_type_body = []
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for rule in rule_list:
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conditions = (
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rule["conditions"].replace("\r", " ").replace("\n", " ")
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)
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if_rule_str = f"if {conditions}:\n alerts.append({json.dumps(rule['alert'])})"
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if_rule = ast.parse(if_rule_str).body[0]
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if_patient_type_body.append(if_rule)
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if if_patient_type_body:
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if_patient_type = ast.If(
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test=ast.Compare(
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left=ast.Attribute(
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value=ast.Name(id="state", ctx=ast.Load()),
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attr="patient_type",
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ctx=ast.Load(),
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),
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ops=[ast.Eq()],
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comparators=[ast.Constant(value=patient_type)],
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),
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body=if_patient_type_body,
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orelse=[],
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)
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node.body.append(if_patient_type)
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node.body.append(
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ast.parse(
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'if not alerts:\n return "Tidak ada alert prioritas tinggi. Lanjutkan pemantauan dan dokumentasi."'
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| 512 |
+
).body[0]
|
| 513 |
+
)
|
| 514 |
+
node.body.append(
|
| 515 |
+
ast.parse(
|
| 516 |
+
'return "\\n- ".join(["ALERT:"] + alerts)', mode="single"
|
| 517 |
+
).body[0]
|
| 518 |
+
)
|
| 519 |
|
|
|
|
| 520 |
new_code = ast.unparse(tree)
|
|
|
|
|
|
|
| 521 |
with open("rules.py", "w") as f:
|
| 522 |
f.write(new_code)
|
| 523 |
|
| 524 |
return "Rules saved successfully."
|
| 525 |
|
|
|
|
|
|
|
|
|
|
|
|
|
| 526 |
|
| 527 |
# --- Build UI ---
|
| 528 |
with gr.Blocks(
|
|
|
|
| 550 |
temp_plot = gr.Plot()
|
| 551 |
with gr.Tab("SpO₂"):
|
| 552 |
spo2_plot = gr.Plot()
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
| 553 |
|
| 554 |
+
with gr.TabItem("Rule Editor"):
|
| 555 |
+
gr.Markdown("## CDSS Rule Editor")
|
| 556 |
+
|
| 557 |
+
initial_rules = parse_rules()
|
| 558 |
+
initial_dfs = rules_to_dataframes(initial_rules)
|
| 559 |
+
|
| 560 |
+
with gr.Tabs():
|
| 561 |
+
with gr.Tab("Mother"):
|
| 562 |
+
df_mother = gr.DataFrame(
|
| 563 |
+
value=initial_dfs["Mother"],
|
| 564 |
+
headers=["Conditions", "Alert"],
|
| 565 |
+
interactive=True,
|
| 566 |
+
row_count=(len(initial_dfs["Mother"]) + 1, "dynamic"),
|
| 567 |
+
type="pandas",
|
| 568 |
+
)
|
| 569 |
+
add_mother_btn = gr.Button("➕ Add Mother Rule")
|
| 570 |
+
add_mother_btn.click(add_row, inputs=df_mother, outputs=df_mother)
|
| 571 |
+
|
| 572 |
+
with gr.Tab("Neonate"):
|
| 573 |
+
df_neonate = gr.DataFrame(
|
| 574 |
+
value=initial_dfs["Neonate"],
|
| 575 |
+
headers=["Conditions", "Alert"],
|
| 576 |
+
interactive=True,
|
| 577 |
+
row_count=(len(initial_dfs["Neonate"]) + 1, "dynamic"),
|
| 578 |
+
type="pandas",
|
| 579 |
+
)
|
| 580 |
+
add_neonate_btn = gr.Button("➕ Add Neonate Rule")
|
| 581 |
+
add_neonate_btn.click(
|
| 582 |
+
add_row, inputs=df_neonate, outputs=df_neonate
|
| 583 |
+
)
|
| 584 |
+
|
| 585 |
+
with gr.Tab("Gyn"):
|
| 586 |
+
df_gyn = gr.DataFrame(
|
| 587 |
+
value=initial_dfs["Gyn"],
|
| 588 |
+
headers=["Conditions", "Alert"],
|
| 589 |
+
interactive=True,
|
| 590 |
+
row_count=(len(initial_dfs["Gyn"]) + 1, "dynamic"),
|
| 591 |
+
type="pandas",
|
| 592 |
+
)
|
| 593 |
+
add_gyn_btn = gr.Button("➕ Add Gyn Rule")
|
| 594 |
+
add_gyn_btn.click(add_row, inputs=df_gyn, outputs=df_gyn)
|
| 595 |
+
|
| 596 |
+
save_button = gr.Button("💾 Save Rules")
|
| 597 |
+
status_textbox = gr.Textbox(label="Status", interactive=False)
|
| 598 |
+
|
| 599 |
+
save_button.click(
|
| 600 |
+
save_rules,
|
| 601 |
+
inputs=[df_mother, df_neonate, df_gyn],
|
| 602 |
+
outputs=status_textbox,
|
| 603 |
+
)
|
| 604 |
|
| 605 |
with gr.Row():
|
| 606 |
with gr.Column(scale=2):
|
|
|
|
| 702 |
btn_C3,
|
| 703 |
],
|
| 704 |
):
|
| 705 |
+
btn.click(
|
| 706 |
+
inject_scenario,
|
| 707 |
+
[gr.State(tag), cdss_toggle, history_df, historic_text],
|
| 708 |
+
ui_outputs,
|
| 709 |
+
)
|
| 710 |
|
| 711 |
csv_outputs = [history_df, df_view, bp_plot, hr_plot, rr_plot, temp_plot, spo2_plot]
|
| 712 |
csv_file.change(load_csv, [csv_file, history_df], csv_outputs)
|
rules.py
CHANGED
|
@@ -5,25 +5,25 @@ def rule_based_cdss(state: PatientState) -> str:
|
|
| 5 |
labs = state.labs
|
| 6 |
alerts = []
|
| 7 |
if state.patient_type == 'Mother':
|
| 8 |
-
if v.sbp < 100 and v.hr > 110 and ('Hb' in labs and labs['Hb'] <= 9
|
| 9 |
alerts.append('PPH suspected: lakukan uterotonik, massage uterus, siapkan transfusi, monitoring 5 menit.')
|
| 10 |
-
if v.sbp >=
|
| 11 |
-
alerts.append('
|
| 12 |
-
if v.temp_c >= 38.5 and v.sbp <= 100
|
| 13 |
alerts.append('Sepsis maternal: kultur darah & luka, antibiotik spektrum luas dalam 1 jam, monitor MAP & urine.')
|
| 14 |
if state.patient_type == 'Neonate':
|
| 15 |
-
if labs.get('BB', 9999) < 2500 or labs.get('UsiaGestasi_mgg', 99) < 37
|
| 16 |
alerts.append('Prematurity/BBLR')
|
| 17 |
-
if v.spo2 < 90 or v.hr < 100
|
| 18 |
alerts.append('Asfiksia: resusitasi neonatal sesuai NRP, ventilasi tekanan positif, evaluasi setiap 30 detik.')
|
| 19 |
-
if v.temp_c >= 38.0 and labs.get('CRP', 0) >= 10
|
| 20 |
alerts.append('Sepsis neonatal: kultur darah, antibiotik empiris NICU, monitor tanda vital ketat.')
|
| 21 |
if state.patient_type == 'Gyn':
|
| 22 |
-
if
|
| 23 |
alerts.append('Komplikasi pasca bedah (curiga ureter): evaluasi segera, USG/CT urografi, konsult urologi.')
|
| 24 |
-
if v.temp_c >= 38.0
|
| 25 |
alerts.append('Infeksi pasca-bedah: kultur luka, antibiotik, pertimbangkan debridement.')
|
| 26 |
-
if
|
| 27 |
alerts.append('Pap smear abnormal tanpa follow-up: lakukan kolposkopi & biopsi, aktifkan notifikasi rujukan.')
|
| 28 |
if not alerts:
|
| 29 |
return 'Tidak ada alert prioritas tinggi. Lanjutkan pemantauan dan dokumentasi.'
|
|
|
|
| 5 |
labs = state.labs
|
| 6 |
alerts = []
|
| 7 |
if state.patient_type == 'Mother':
|
| 8 |
+
if v.sbp < 100 and v.hr > 110 and ('Hb' in labs and labs['Hb'] <= 9):
|
| 9 |
alerts.append('PPH suspected: lakukan uterotonik, massage uterus, siapkan transfusi, monitoring 5 menit.')
|
| 10 |
+
if v.sbp >= 150 or v.dbp >= 110:
|
| 11 |
+
alerts.append('Preeklampsia')
|
| 12 |
+
if v.temp_c >= 38.5 and v.sbp <= 100:
|
| 13 |
alerts.append('Sepsis maternal: kultur darah & luka, antibiotik spektrum luas dalam 1 jam, monitor MAP & urine.')
|
| 14 |
if state.patient_type == 'Neonate':
|
| 15 |
+
if labs.get('BB', 9999) < 2500 or labs.get('UsiaGestasi_mgg', 99) < 37:
|
| 16 |
alerts.append('Prematurity/BBLR')
|
| 17 |
+
if v.spo2 < 90 or v.hr < 100:
|
| 18 |
alerts.append('Asfiksia: resusitasi neonatal sesuai NRP, ventilasi tekanan positif, evaluasi setiap 30 detik.')
|
| 19 |
+
if v.temp_c >= 38.0 and labs.get('CRP', 0) >= 10:
|
| 20 |
alerts.append('Sepsis neonatal: kultur darah, antibiotik empiris NICU, monitor tanda vital ketat.')
|
| 21 |
if state.patient_type == 'Gyn':
|
| 22 |
+
if labs.get('UrineOutput_ml_hr', 9999) < 20:
|
| 23 |
alerts.append('Komplikasi pasca bedah (curiga ureter): evaluasi segera, USG/CT urografi, konsult urologi.')
|
| 24 |
+
if v.temp_c >= 38.0 or labs.get('Luka') == 'bengkak+kemerahan':
|
| 25 |
alerts.append('Infeksi pasca-bedah: kultur luka, antibiotik, pertimbangkan debridement.')
|
| 26 |
+
if labs.get('PapSmear', '').startswith('abnormal'):
|
| 27 |
alerts.append('Pap smear abnormal tanpa follow-up: lakukan kolposkopi & biopsi, aktifkan notifikasi rujukan.')
|
| 28 |
if not alerts:
|
| 29 |
return 'Tidak ada alert prioritas tinggi. Lanjutkan pemantauan dan dokumentasi.'
|
rules_visualization.svg
ADDED
|
|
validator.py
ADDED
|
@@ -0,0 +1,152 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import gradio as gr
|
| 2 |
+
import pandas as pd
|
| 3 |
+
from models import PatientState, Vitals
|
| 4 |
+
from rules import rule_based_cdss
|
| 5 |
+
import json
|
| 6 |
+
import ast
|
| 7 |
+
|
| 8 |
+
|
| 9 |
+
def test_condition(
|
| 10 |
+
patient_type, sbp, dbp, hr, rr, temp_c, spo2, labs_text, condition, alert_text
|
| 11 |
+
):
|
| 12 |
+
"""
|
| 13 |
+
Tests a single condition against a manually defined patient state.
|
| 14 |
+
"""
|
| 15 |
+
try:
|
| 16 |
+
labs = json.loads(labs_text)
|
| 17 |
+
except json.JSONDecodeError:
|
| 18 |
+
return "Error: Invalid JSON in Labs field."
|
| 19 |
+
|
| 20 |
+
vitals = Vitals(
|
| 21 |
+
sbp=int(sbp),
|
| 22 |
+
dbp=int(dbp),
|
| 23 |
+
hr=int(hr),
|
| 24 |
+
rr=int(rr),
|
| 25 |
+
temp_c=float(temp_c),
|
| 26 |
+
spo2=int(spo2),
|
| 27 |
+
)
|
| 28 |
+
state = PatientState(
|
| 29 |
+
scenario="Validation",
|
| 30 |
+
patient_type=patient_type,
|
| 31 |
+
notes="",
|
| 32 |
+
labs=labs,
|
| 33 |
+
vitals=vitals,
|
| 34 |
+
)
|
| 35 |
+
|
| 36 |
+
# Dynamically create a rule function for testing
|
| 37 |
+
rule_fnc_str = f"""
|
| 38 |
+
def dynamic_rule(state):
|
| 39 |
+
v = state.vitals
|
| 40 |
+
labs = state.labs
|
| 41 |
+
alerts = []
|
| 42 |
+
if {condition}:
|
| 43 |
+
alerts.append("{alert_text}")
|
| 44 |
+
if not alerts:
|
| 45 |
+
return "No alert triggered."
|
| 46 |
+
return "\n- ".join(["ALERT:"] + alerts)
|
| 47 |
+
"""
|
| 48 |
+
try:
|
| 49 |
+
exec(rule_fnc_str, globals())
|
| 50 |
+
result = dynamic_rule(state)
|
| 51 |
+
return result
|
| 52 |
+
except Exception as e:
|
| 53 |
+
return f"Error in condition syntax: {e}"
|
| 54 |
+
|
| 55 |
+
|
| 56 |
+
def add_rule_to_set(patient_type, condition, alert_text):
|
| 57 |
+
"""
|
| 58 |
+
Adds the new rule to the rules.py file.
|
| 59 |
+
"""
|
| 60 |
+
if not condition or not alert_text:
|
| 61 |
+
return "Error: Condition and Alert text cannot be empty."
|
| 62 |
+
|
| 63 |
+
try:
|
| 64 |
+
with open("rules.py", "r") as f:
|
| 65 |
+
tree = ast.parse(f.read())
|
| 66 |
+
|
| 67 |
+
for node in ast.walk(tree):
|
| 68 |
+
if isinstance(node, ast.FunctionDef) and node.name == "rule_based_cdss":
|
| 69 |
+
for body_item in node.body:
|
| 70 |
+
if (
|
| 71 |
+
isinstance(body_item, ast.If)
|
| 72 |
+
and hasattr(body_item.test, "comparators")
|
| 73 |
+
and body_item.test.comparators
|
| 74 |
+
and isinstance(body_item.test.comparators[0], ast.Constant)
|
| 75 |
+
and body_item.test.comparators[0].value == patient_type
|
| 76 |
+
):
|
| 77 |
+
|
| 78 |
+
new_rule_str = (
|
| 79 |
+
f'if {condition}:\n alerts.append("{alert_text}")'
|
| 80 |
+
)
|
| 81 |
+
new_rule_node = ast.parse(new_rule_str).body[0]
|
| 82 |
+
body_item.body.append(new_rule_node)
|
| 83 |
+
break
|
| 84 |
+
|
| 85 |
+
new_code = ast.unparse(tree)
|
| 86 |
+
with open("rules.py", "w") as f:
|
| 87 |
+
f.write(new_code)
|
| 88 |
+
|
| 89 |
+
return f"Rule added to {patient_type} ruleset and saved to rules.py."
|
| 90 |
+
|
| 91 |
+
except Exception as e:
|
| 92 |
+
return f"Failed to add rule: {e}"
|
| 93 |
+
|
| 94 |
+
|
| 95 |
+
def validator_tab():
|
| 96 |
+
with gr.TabItem("Rule Validator"):
|
| 97 |
+
gr.Markdown("## Validate and Add New Rules")
|
| 98 |
+
with gr.Row():
|
| 99 |
+
with gr.Column():
|
| 100 |
+
gr.Markdown("### 1. Define Patient State")
|
| 101 |
+
patient_type_validate = gr.Radio(
|
| 102 |
+
["Mother", "Neonate", "Gyn"], label="Patient Type", value="Mother"
|
| 103 |
+
)
|
| 104 |
+
sbp_validate = gr.Number(label="SBP", value=120)
|
| 105 |
+
dbp_validate = gr.Number(label="DBP", value=80)
|
| 106 |
+
hr_validate = gr.Number(label="HR", value=80)
|
| 107 |
+
rr_validate = gr.Number(label="RR", value=18)
|
| 108 |
+
temp_c_validate = gr.Number(label="Temp (°C)", value=37.0)
|
| 109 |
+
spo2_validate = gr.Number(label="SpO₂ (%)", value=98)
|
| 110 |
+
labs_validate = gr.Textbox(
|
| 111 |
+
label="Labs (JSON format)", value='{"Hb": 12.0}', lines=3
|
| 112 |
+
)
|
| 113 |
+
|
| 114 |
+
with gr.Column():
|
| 115 |
+
gr.Markdown("### 2. Define and Test Rule")
|
| 116 |
+
condition_validate = gr.Textbox(
|
| 117 |
+
label="Condition (Python expression)", value="v.sbp > 140", lines=3
|
| 118 |
+
)
|
| 119 |
+
alert_validate = gr.Textbox(
|
| 120 |
+
label="Alert Message", value="Preeclampsia suspected", lines=3
|
| 121 |
+
)
|
| 122 |
+
test_button = gr.Button("Test Rule", variant="secondary")
|
| 123 |
+
validation_result = gr.Textbox(
|
| 124 |
+
label="Validation Result", interactive=False
|
| 125 |
+
)
|
| 126 |
+
|
| 127 |
+
gr.Markdown("### 3. Add Rule to Ruleset")
|
| 128 |
+
add_rule_button = gr.Button("Add Rule to Ruleset", variant="primary")
|
| 129 |
+
add_rule_status = gr.Textbox(label="Status", interactive=False)
|
| 130 |
+
|
| 131 |
+
test_button.click(
|
| 132 |
+
test_condition,
|
| 133 |
+
inputs=[
|
| 134 |
+
patient_type_validate,
|
| 135 |
+
sbp_validate,
|
| 136 |
+
dbp_validate,
|
| 137 |
+
hr_validate,
|
| 138 |
+
rr_validate,
|
| 139 |
+
temp_c_validate,
|
| 140 |
+
spo2_validate,
|
| 141 |
+
labs_validate,
|
| 142 |
+
condition_validate,
|
| 143 |
+
alert_validate,
|
| 144 |
+
],
|
| 145 |
+
outputs=validation_result,
|
| 146 |
+
)
|
| 147 |
+
|
| 148 |
+
add_rule_button.click(
|
| 149 |
+
add_rule_to_set,
|
| 150 |
+
inputs=[patient_type_validate, condition_validate, alert_validate],
|
| 151 |
+
outputs=add_rule_status,
|
| 152 |
+
)
|
visualizer.py
DELETED
|
@@ -1,184 +0,0 @@
|
|
| 1 |
-
import gradio as gr
|
| 2 |
-
import json
|
| 3 |
-
import ast
|
| 4 |
-
import pandas as pd
|
| 5 |
-
|
| 6 |
-
|
| 7 |
-
def parse_rules():
|
| 8 |
-
with open("rules.py", "r") as f:
|
| 9 |
-
tree = ast.parse(f.read())
|
| 10 |
-
|
| 11 |
-
rules = {"Mother": [], "Neonate": [], "Gyn": []}
|
| 12 |
-
|
| 13 |
-
for node in ast.walk(tree):
|
| 14 |
-
if isinstance(node, ast.FunctionDef) and node.name == "rule_based_cdss":
|
| 15 |
-
for body_item in node.body:
|
| 16 |
-
if (
|
| 17 |
-
isinstance(body_item, ast.If)
|
| 18 |
-
and isinstance(body_item.test, ast.Compare)
|
| 19 |
-
and isinstance(body_item.test.left, ast.Attribute)
|
| 20 |
-
and isinstance(body_item.test.left.value, ast.Name)
|
| 21 |
-
and body_item.test.left.value.id == "state"
|
| 22 |
-
and body_item.test.left.attr == "patient_type"
|
| 23 |
-
and isinstance(body_item.test.ops[0], ast.Eq)
|
| 24 |
-
and isinstance(body_item.test.comparators[0], ast.Constant)
|
| 25 |
-
):
|
| 26 |
-
|
| 27 |
-
patient_type = body_item.test.comparators[0].value
|
| 28 |
-
if patient_type in rules:
|
| 29 |
-
for rule_node in body_item.body:
|
| 30 |
-
if isinstance(rule_node, ast.If):
|
| 31 |
-
conditions = ast.unparse(rule_node.test)
|
| 32 |
-
alert = ""
|
| 33 |
-
for item in rule_node.body:
|
| 34 |
-
if (
|
| 35 |
-
isinstance(item, ast.Expr)
|
| 36 |
-
and isinstance(item.value, ast.Call)
|
| 37 |
-
and hasattr(item.value.func, "value")
|
| 38 |
-
and hasattr(item.value.func.value, "id")
|
| 39 |
-
and item.value.func.value.id == "alerts"
|
| 40 |
-
and item.value.func.attr == "append"
|
| 41 |
-
and isinstance(item.value.args[0], ast.Constant)
|
| 42 |
-
):
|
| 43 |
-
alert = item.value.args[0].value
|
| 44 |
-
rules[patient_type].append(
|
| 45 |
-
{"conditions": conditions, "alert": alert}
|
| 46 |
-
)
|
| 47 |
-
return rules
|
| 48 |
-
|
| 49 |
-
|
| 50 |
-
def rules_to_dataframes(rules):
|
| 51 |
-
dataframes = {}
|
| 52 |
-
for patient_type, rules_list in rules.items():
|
| 53 |
-
data = {"Conditions": [], "Alert": []}
|
| 54 |
-
for rule in rules_list:
|
| 55 |
-
data["Conditions"].append(rule["conditions"])
|
| 56 |
-
data["Alert"].append(rule["alert"])
|
| 57 |
-
df = pd.DataFrame(data)
|
| 58 |
-
dataframes[patient_type] = df
|
| 59 |
-
return dataframes
|
| 60 |
-
|
| 61 |
-
|
| 62 |
-
def dataframes_to_rules(dfs):
|
| 63 |
-
rules = {"Mother": [], "Neonate": [], "Gyn": []}
|
| 64 |
-
for patient_type, df in dfs.items():
|
| 65 |
-
if df is not None:
|
| 66 |
-
for index, row in df.iterrows():
|
| 67 |
-
if row["Conditions"] and row["Alert"]:
|
| 68 |
-
rules[patient_type].append(
|
| 69 |
-
{"conditions": row["Conditions"], "alert": row["Alert"]}
|
| 70 |
-
)
|
| 71 |
-
return rules
|
| 72 |
-
|
| 73 |
-
|
| 74 |
-
def add_row(df):
|
| 75 |
-
if df is None:
|
| 76 |
-
df = pd.DataFrame(columns=["Conditions", "Alert"])
|
| 77 |
-
df.loc[len(df)] = ["", ""]
|
| 78 |
-
return df
|
| 79 |
-
|
| 80 |
-
|
| 81 |
-
def save_dataframes(df_mother, df_neonate, df_gyn):
|
| 82 |
-
dfs = {"Mother": df_mother, "Neonate": df_neonate, "Gyn": df_gyn}
|
| 83 |
-
rules = dataframes_to_rules(dfs)
|
| 84 |
-
|
| 85 |
-
with open("rules.py", "r") as f:
|
| 86 |
-
tree = ast.parse(f.read())
|
| 87 |
-
|
| 88 |
-
for node in ast.walk(tree):
|
| 89 |
-
if isinstance(node, ast.FunctionDef) and node.name == "rule_based_cdss":
|
| 90 |
-
node.body = []
|
| 91 |
-
node.body.append(ast.parse("v = state.vitals").body[0])
|
| 92 |
-
node.body.append(ast.parse("labs = state.labs").body[0])
|
| 93 |
-
node.body.append(ast.parse("alerts = []").body[0])
|
| 94 |
-
|
| 95 |
-
for patient_type, rule_list in rules.items():
|
| 96 |
-
if_patient_type_body = []
|
| 97 |
-
for rule in rule_list:
|
| 98 |
-
conditions = (
|
| 99 |
-
rule["conditions"].replace("\r", " ").replace("\n", " ")
|
| 100 |
-
)
|
| 101 |
-
if_rule_str = f"if {conditions}:\n alerts.append({json.dumps(rule['alert'])})"
|
| 102 |
-
if_rule = ast.parse(if_rule_str).body[0]
|
| 103 |
-
if_patient_type_body.append(if_rule)
|
| 104 |
-
|
| 105 |
-
if if_patient_type_body:
|
| 106 |
-
if_patient_type = ast.If(
|
| 107 |
-
test=ast.Compare(
|
| 108 |
-
left=ast.Attribute(
|
| 109 |
-
value=ast.Name(id="state", ctx=ast.Load()),
|
| 110 |
-
attr="patient_type",
|
| 111 |
-
ctx=ast.Load(),
|
| 112 |
-
),
|
| 113 |
-
ops=[ast.Eq()],
|
| 114 |
-
comparators=[ast.Constant(value=patient_type)],
|
| 115 |
-
),
|
| 116 |
-
body=if_patient_type_body,
|
| 117 |
-
orelse=[],
|
| 118 |
-
)
|
| 119 |
-
node.body.append(if_patient_type)
|
| 120 |
-
|
| 121 |
-
node.body.append(
|
| 122 |
-
ast.parse(
|
| 123 |
-
'if not alerts:\n return "Tidak ada alert prioritas tinggi. Lanjutkan pemantauan dan dokumentasi."'
|
| 124 |
-
).body[0]
|
| 125 |
-
)
|
| 126 |
-
node.body.append(
|
| 127 |
-
ast.parse(
|
| 128 |
-
'return "\\n- ".join(["ALERT:"] + alerts)', mode="single"
|
| 129 |
-
).body[0]
|
| 130 |
-
)
|
| 131 |
-
|
| 132 |
-
new_code = ast.unparse(tree)
|
| 133 |
-
with open("rules.py", "w") as f:
|
| 134 |
-
f.write(new_code)
|
| 135 |
-
|
| 136 |
-
return "Rules saved successfully."
|
| 137 |
-
|
| 138 |
-
|
| 139 |
-
with gr.Blocks() as demo:
|
| 140 |
-
gr.Markdown("## CDSS Rule Editor")
|
| 141 |
-
|
| 142 |
-
initial_rules = parse_rules()
|
| 143 |
-
initial_dfs = rules_to_dataframes(initial_rules)
|
| 144 |
-
|
| 145 |
-
with gr.Tabs():
|
| 146 |
-
with gr.Tab("Mother"):
|
| 147 |
-
df_mother = gr.DataFrame(
|
| 148 |
-
value=initial_dfs["Mother"],
|
| 149 |
-
headers=["Conditions", "Alert"],
|
| 150 |
-
interactive=True,
|
| 151 |
-
row_count=(len(initial_dfs["Mother"]) + 1, "dynamic"),
|
| 152 |
-
)
|
| 153 |
-
add_mother_btn = gr.Button("➕ Add Mother Rule")
|
| 154 |
-
add_mother_btn.click(add_row, inputs=df_mother, outputs=df_mother)
|
| 155 |
-
|
| 156 |
-
with gr.Tab("Neonate"):
|
| 157 |
-
df_neonate = gr.DataFrame(
|
| 158 |
-
value=initial_dfs["Neonate"],
|
| 159 |
-
headers=["Conditions", "Alert"],
|
| 160 |
-
interactive=True,
|
| 161 |
-
row_count=(len(initial_dfs["Neonate"]) + 1, "dynamic"),
|
| 162 |
-
)
|
| 163 |
-
add_neonate_btn = gr.Button("➕ Add Neonate Rule")
|
| 164 |
-
add_neonate_btn.click(add_row, inputs=df_neonate, outputs=df_neonate)
|
| 165 |
-
|
| 166 |
-
with gr.Tab("Gyn"):
|
| 167 |
-
df_gyn = gr.DataFrame(
|
| 168 |
-
value=initial_dfs["Gyn"],
|
| 169 |
-
headers=["Conditions", "Alert"],
|
| 170 |
-
interactive=True,
|
| 171 |
-
row_count=(len(initial_dfs["Gyn"]) + 1, "dynamic"),
|
| 172 |
-
)
|
| 173 |
-
add_gyn_btn = gr.Button("➕ Add Gyn Rule")
|
| 174 |
-
add_gyn_btn.click(add_row, inputs=df_gyn, outputs=df_gyn)
|
| 175 |
-
|
| 176 |
-
save_button = gr.Button("💾 Save Rules")
|
| 177 |
-
status_textbox = gr.Textbox(label="Status", interactive=False)
|
| 178 |
-
|
| 179 |
-
save_button.click(
|
| 180 |
-
save_dataframes, inputs=[df_mother, df_neonate, df_gyn], outputs=status_textbox
|
| 181 |
-
)
|
| 182 |
-
|
| 183 |
-
if __name__ == "__main__":
|
| 184 |
-
demo.launch()
|
|
|
|
|
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