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Update app.py
Browse files
app.py
CHANGED
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@@ -13,7 +13,6 @@ from langchain.chains.question_answering import load_qa_chain
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from langchain.prompts import PromptTemplate
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# --- Get API key from Hugging Face Secrets ---
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# In Hugging Face Spaces, set this in Settings -> Repository secrets
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GOOGLE_API_KEY = os.environ.get("GOOGLE_API_KEY", "")
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# Use temporary directory for Hugging Face Spaces
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@@ -23,6 +22,7 @@ FAISS_INDEX_PATH = os.path.join(TEMP_DIR, "faiss_index")
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# PDF file path
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PDF_FILE_PATH = "./slide.pdf"
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def get_pdf_text_from_file(pdf_path):
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"""Read PDF from file path"""
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text = ""
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@@ -36,40 +36,91 @@ def get_pdf_text_from_file(pdf_path):
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text += page_text
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return text
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def get_text_chunks(text):
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text_splitter = RecursiveCharacterTextSplitter(chunk_size=10000, chunk_overlap=1000)
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return text_splitter.split_text(text)
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def get_vector_store(text_chunks, api_key):
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embeddings = GoogleGenerativeAIEmbeddings(model="models/embedding-001", google_api_key=api_key)
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vector_store = FAISS.from_texts(text_chunks, embedding=embeddings)
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vector_store.save_local(FAISS_INDEX_PATH)
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def get_conversational_chain(api_key):
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prompt_template = """
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You are a helpful assistant
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{context}
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{question}
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Answer:
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"""
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model = ChatGoogleGenerativeAI(model="gemini-2.0-flash-exp", temperature=0, google_api_key=api_key)
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prompt = PromptTemplate(template=prompt_template, input_variables=["context", "question"])
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chain = load_qa_chain(model, chain_type="stuff", prompt=prompt)
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return chain
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embeddings = GoogleGenerativeAIEmbeddings(model="models/embedding-001", google_api_key=api_key)
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new_db = FAISS.load_local(FAISS_INDEX_PATH, embeddings, allow_dangerous_deserialization=True)
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docs = new_db.similarity_search(user_question)
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chain = get_conversational_chain(api_key)
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response = chain(
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def main():
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st.set_page_config(
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st.header("Antimicrobial Pharmacology Chatbot (RX24)")
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st.markdown("---")
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st.session_state["api_entered"] = False
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if "pdf_processed" not in st.session_state:
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st.session_state["pdf_processed"] = False
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# Check for API key
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api_key = GOOGLE_API_KEY
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@@ -85,13 +138,17 @@ def main():
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# STEP 1: API Key handling
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if not st.session_state["api_entered"]:
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if not api_key:
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st.warning("
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st.info("Please add GOOGLE_API_KEY to your Hugging Face Space secrets or enter it below.")
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user_api_key = st.text_input(
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if st.button("Continue", type="primary") and user_api_key:
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st.session_state["user_api_key"] = user_api_key
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st.session_state["api_entered"] = True
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st.
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st.stop()
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else:
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st.session_state["user_api_key"] = api_key
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@@ -107,7 +164,7 @@ def main():
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try:
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raw_text = get_pdf_text_from_file(PDF_FILE_PATH)
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if not raw_text.strip():
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st.error("
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st.stop()
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st.info(f"Processing: {PDF_FILE_PATH}")
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text_chunks = get_text_chunks(raw_text)
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get_vector_store(text_chunks, api_key)
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st.session_state["pdf_processed"] = True
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st.success("
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st.
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except FileNotFoundError as e:
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st.error(
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st.stop()
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except Exception as e:
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st.error(f"
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st.stop()
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# STEP 3:
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col1, col2 = st.columns([3, 1])
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with col2:
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if st.button(" Reprocess PDF"):
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st.session_state["pdf_processed"] = False
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st.
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# Add footer
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st.markdown("---")
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st.markdown(
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"""
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<div style='text-align: center'>
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<small
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</div>
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""",
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unsafe_allow_html=True
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)
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if __name__ == "__main__":
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main()
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from langchain.prompts import PromptTemplate
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# --- Get API key from Hugging Face Secrets ---
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GOOGLE_API_KEY = os.environ.get("GOOGLE_API_KEY", "")
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# Use temporary directory for Hugging Face Spaces
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# PDF file path
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PDF_FILE_PATH = "./slide.pdf"
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def get_pdf_text_from_file(pdf_path):
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"""Read PDF from file path"""
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text = ""
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text += page_text
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return text
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def get_text_chunks(text):
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text_splitter = RecursiveCharacterTextSplitter(chunk_size=10000, chunk_overlap=1000)
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return text_splitter.split_text(text)
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def get_vector_store(text_chunks, api_key):
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embeddings = GoogleGenerativeAIEmbeddings(model="models/embedding-001", google_api_key=api_key)
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vector_store = FAISS.from_texts(text_chunks, embedding=embeddings)
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vector_store.save_local(FAISS_INDEX_PATH)
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def get_conversational_chain(api_key):
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prompt_template = """
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You are a helpful assistant for Antimicrobial Pharmacology. You answer questions based ONLY on the context provided from the PDF documents.
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IMPORTANT RULES:
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1. Do not use any external knowledge or assumptions.
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2. If the answer is not found in the context, reply with "I don't know based on the provided materials."
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3. Be conversational and helpful.
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4. When generating MCQs, create questions that test understanding of the material.
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5. When checking answers, be encouraging and provide explanations.
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Chat History:
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{chat_history}
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Context from PDF:
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{context}
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Current Question:
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{question}
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Instructions:
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- If the user asks for a multiple choice question (MCQ), quiz, or test question:
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* Generate a question with 4 options (A, B, C, D) based ONLY on the context
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* Make sure the question tests important concepts from the material
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* Do NOT reveal the correct answer yet
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* Ask the user to select their answer
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- If the user provides an answer (like "A", "B", "C", "D" or the full answer text) AND there was a recent MCQ in the chat history:
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* Check if the answer is correct based on the context
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* If correct: Congratulate them and explain why it's correct
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* If incorrect: Encourage them, reveal the correct answer, and explain why
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- For regular questions: Answer based on the context provided
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Answer:
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"""
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model = ChatGoogleGenerativeAI(model="gemini-2.0-flash-exp", temperature=0.3, google_api_key=api_key)
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prompt = PromptTemplate(template=prompt_template, input_variables=["context", "question", "chat_history"])
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chain = load_qa_chain(model, chain_type="stuff", prompt=prompt)
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return chain
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def get_response(user_question, api_key, chat_history):
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"""Get response from the AI model with chat history context"""
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embeddings = GoogleGenerativeAIEmbeddings(model="models/embedding-001", google_api_key=api_key)
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new_db = FAISS.load_local(FAISS_INDEX_PATH, embeddings, allow_dangerous_deserialization=True)
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docs = new_db.similarity_search(user_question, k=4)
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# Format chat history for context
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history_text = ""
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for msg in chat_history[-10:]: # Keep last 10 messages for context
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role = "User" if msg["role"] == "user" else "Assistant"
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history_text += f"{role}: {msg['content']}\n"
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chain = get_conversational_chain(api_key)
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response = chain(
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{
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"input_documents": docs,
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"question": user_question,
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"chat_history": history_text
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},
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return_only_outputs=True
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)
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return response["output_text"]
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def main():
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st.set_page_config(
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page_title="Antimicrobial Pharmacology Chatbot",
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page_icon="",
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layout="wide"
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)
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st.header("Antimicrobial Pharmacology Chatbot (RX24)")
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st.markdown("---")
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st.session_state["api_entered"] = False
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if "pdf_processed" not in st.session_state:
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st.session_state["pdf_processed"] = False
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if "messages" not in st.session_state:
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st.session_state["messages"] = []
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# Check for API key
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api_key = GOOGLE_API_KEY
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# STEP 1: API Key handling
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if not st.session_state["api_entered"]:
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if not api_key:
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st.warning("Google API Key not found in environment variables.")
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st.info("Please add GOOGLE_API_KEY to your Hugging Face Space secrets or enter it below.")
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user_api_key = st.text_input(
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"Enter your Gemini API key",
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type="password",
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help="Get your API key from https://makersuite.google.com/app/apikey"
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)
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if st.button("Continue", type="primary") and user_api_key:
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st.session_state["user_api_key"] = user_api_key
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st.session_state["api_entered"] = True
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st.rerun()
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st.stop()
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else:
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st.session_state["user_api_key"] = api_key
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try:
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raw_text = get_pdf_text_from_file(PDF_FILE_PATH)
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if not raw_text.strip():
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st.error("No text could be extracted from the PDF. Please check your file.")
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st.stop()
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st.info(f"Processing: {PDF_FILE_PATH}")
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text_chunks = get_text_chunks(raw_text)
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get_vector_store(text_chunks, api_key)
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st.session_state["pdf_processed"] = True
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st.success("PDF processed successfully. You can now ask questions.")
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st.rerun()
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except FileNotFoundError as e:
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st.error(str(e))
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st.stop()
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except Exception as e:
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st.error(f"Error processing PDF: {str(e)}")
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st.stop()
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# STEP 3: Chat Interface
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# Sidebar with options
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with st.sidebar:
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st.subheader("Options")
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st.info("Loaded: Antimicrobial Pharmacology Course")
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if st.button("Reprocess PDF"):
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st.session_state["pdf_processed"] = False
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st.rerun()
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if st.button("Clear Chat History"):
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st.session_state["messages"] = []
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st.rerun()
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st.markdown("---")
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st.subheader("Quick Actions")
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st.markdown("""
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Try asking:
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- "Give me a multiple choice question"
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- "Quiz me on antibiotics"
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- "Generate an MCQ about [topic]"
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- "What are the main topics?"
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""")
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st.markdown("---")
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st.subheader("How to use MCQs")
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st.markdown("""
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1. Ask for an MCQ (e.g., "Give me a quiz question")
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2. The bot will generate a question with options A-D
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3. Reply with your answer (e.g., "A" or "The answer is B")
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4. Get feedback on whether you're correct
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""")
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# Main chat area
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st.subheader("Chat with your Pharmacology Assistant")
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# Display chat messages
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for message in st.session_state["messages"]:
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with st.chat_message(message["role"]):
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st.markdown(message["content"])
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# Quick action buttons (only show if no messages yet)
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if len(st.session_state["messages"]) == 0:
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st.markdown("### Quick Start")
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col1, col2, col3 = st.columns(3)
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with col1:
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if st.button("Generate MCQ", use_container_width=True):
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quick_question = "Give me a multiple choice question to test my knowledge"
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st.session_state["messages"].append({"role": "user", "content": quick_question})
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with st.spinner("Generating question..."):
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response = get_response(quick_question, api_key, st.session_state["messages"])
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st.session_state["messages"].append({"role": "assistant", "content": response})
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st.rerun()
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with col2:
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if st.button("Summarize Topics", use_container_width=True):
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quick_question = "What are the main topics covered in this material?"
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st.session_state["messages"].append({"role": "user", "content": quick_question})
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with st.spinner("Analyzing..."):
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response = get_response(quick_question, api_key, st.session_state["messages"])
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st.session_state["messages"].append({"role": "assistant", "content": response})
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st.rerun()
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with col3:
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| 249 |
+
if st.button("How can you help?", use_container_width=True):
|
| 250 |
+
quick_question = "What can you help me with regarding this pharmacology material?"
|
| 251 |
+
st.session_state["messages"].append({"role": "user", "content": quick_question})
|
| 252 |
+
with st.spinner("Processing..."):
|
| 253 |
+
response = get_response(quick_question, api_key, st.session_state["messages"])
|
| 254 |
+
st.session_state["messages"].append({"role": "assistant", "content": response})
|
| 255 |
+
st.rerun()
|
| 256 |
+
|
| 257 |
+
# Chat input
|
| 258 |
+
if user_question := st.chat_input("Ask a question or answer an MCQ..."):
|
| 259 |
+
# Add user message to chat history
|
| 260 |
+
st.session_state["messages"].append({"role": "user", "content": user_question})
|
| 261 |
+
|
| 262 |
+
# Display user message
|
| 263 |
+
with st.chat_message("user"):
|
| 264 |
+
st.markdown(user_question)
|
| 265 |
+
|
| 266 |
+
# Generate and display assistant response
|
| 267 |
+
with st.chat_message("assistant"):
|
| 268 |
+
with st.spinner("Processing..."):
|
| 269 |
+
try:
|
| 270 |
+
response = get_response(user_question, api_key, st.session_state["messages"])
|
| 271 |
+
st.markdown(response)
|
| 272 |
+
st.session_state["messages"].append({"role": "assistant", "content": response})
|
| 273 |
+
except Exception as e:
|
| 274 |
+
error_msg = f"Error getting answer: {str(e)}"
|
| 275 |
+
st.error(error_msg)
|
| 276 |
+
st.session_state["messages"].append({"role": "assistant", "content": error_msg})
|
| 277 |
|
| 278 |
# Add footer
|
| 279 |
st.markdown("---")
|
| 280 |
st.markdown(
|
| 281 |
"""
|
| 282 |
<div style='text-align: center'>
|
| 283 |
+
<small>Antimicrobial Pharmacology Chatbot - Powered by Gemini AI</small>
|
| 284 |
</div>
|
| 285 |
""",
|
| 286 |
unsafe_allow_html=True
|
| 287 |
)
|
| 288 |
|
| 289 |
+
|
| 290 |
if __name__ == "__main__":
|
| 291 |
main()
|