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app.py
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@@ -38,18 +38,9 @@ CSS = """
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HERO = """
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<div id="hero">
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<h1>
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<p>Turn a raw clinical recording into a structured SOAP note
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attribution β nothing is fabricated beyond what was actually said.</p>
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<div class="pills" style="margin-top: 10px;">
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<span class="pill">ποΈ MedASR</span>
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<span class="pill">π€ MedGemma 4B</span>
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<span class="pill">β‘ ZeroGPU</span>
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</div>
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<p style="margin-top:14px; font-size:13px; opacity:.85;">Not a diagnostic
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tool β for demonstration/research use only. Don't upload real patient
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data.</p>
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</div>
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"""
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@@ -84,7 +75,7 @@ def clear_audio():
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return None, PLACEHOLDER_TRANSCRIPT, PLACEHOLDER_SOAP, PLACEHOLDER_TIMING
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with gr.Blocks(title="
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gr.HTML(HERO)
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with gr.Row():
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@@ -138,4 +129,4 @@ with gr.Blocks(title="Chart Whisperer") as demo:
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)
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if __name__ == "__main__":
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demo.launch(theme=THEME, css=CSS)
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HERO = """
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<div id="hero">
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<h1>Medical Notes Using Medgemma</h1>
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<p>Turn a raw clinical recording into a structured SOAP note β nothing is
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fabricated beyond what was actually said.</p>
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</div>
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"""
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return None, PLACEHOLDER_TRANSCRIPT, PLACEHOLDER_SOAP, PLACEHOLDER_TIMING
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with gr.Blocks(title="Medical Notes Using Medgemma") as demo:
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gr.HTML(HERO)
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with gr.Row():
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)
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if __name__ == "__main__":
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demo.launch(theme=THEME, css=CSS, footer_links=[])
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llm.py
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@@ -1,6 +1,7 @@
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"""Audio -> MedASR transcript -> MedGemma 4B SOAP note pipeline."""
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import os
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import time
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from dataclasses import dataclass
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@@ -24,8 +25,40 @@ SYSTEM_PROMPT = (
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# Forced prefix for the assistant turn: with `continue_final_message=True`,
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# generation resumes mid-turn from this exact text, so there is no token
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# position left for a preamble or transcript restatement to occupy.
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_asr_pipe = None
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_llm_model = None
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@@ -101,7 +134,7 @@ def generate_soap_note(transcript: str) -> str:
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new_tokens = generated_ids[0][input_len:]
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completion = processor.decode(new_tokens, skip_special_tokens=True)
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return (SOAP_PREFIX + completion)
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@dataclass
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"""Audio -> MedASR transcript -> MedGemma 4B SOAP note pipeline."""
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import os
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import re
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import time
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from dataclasses import dataclass
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# Forced prefix for the assistant turn: with `continue_final_message=True`,
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# generation resumes mid-turn from this exact text, so there is no token
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# position left for a preamble or transcript restatement to occupy. Only
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# the first header is guaranteed this way β the other three are generated
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# freely and get normalized to match by _normalize_soap_note below.
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SOAP_PREFIX = "S β Subjective:"
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_SOAP_HEADERS = [
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("S", "Subjective"),
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("O", "Objective"),
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("A", "Assessment"),
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("P", "Plan"),
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]
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_SOAP_TITLE_RE = re.compile(r"(?im)^[ \t]*\**[ \t]*SOAP Note[ \t]*:?\**[ \t]*\n+")
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_SOAP_HEADER_RES = [
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(
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re.compile(
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rf"(?im)^[ \t]*\**[ \t]*(?:{letter}[ \t]*[-β][ \t]*)?{word}[ \t]*:\**"
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),
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f"{letter} β {word}:",
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)
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for letter, word in _SOAP_HEADERS
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]
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def _normalize_soap_note(text: str) -> str:
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"""Force all four section headers to the same 'X β Word:' shape.
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Only the first header is pinned via the forced assistant prefix; the
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model is free to drift on the rest (e.g. writing 'Plan:' instead of
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'P β Plan:'), so headers are normalized here rather than trusted.
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"""
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text = _SOAP_TITLE_RE.sub("", text.strip())
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for pattern, canonical in _SOAP_HEADER_RES:
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text = pattern.sub(canonical, text)
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return text.strip()
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_asr_pipe = None
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_llm_model = None
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new_tokens = generated_ids[0][input_len:]
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completion = processor.decode(new_tokens, skip_special_tokens=True)
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return _normalize_soap_note(SOAP_PREFIX + completion)
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@dataclass
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