File size: 22,063 Bytes
2aeb7a5 36fcf33 2aeb7a5 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 | import torch
import numpy as np
import cv2
import psutil
import os
import sys
# Add sam2 folder to path to import from local sam2 directory
_current_file_dir = os.path.dirname(os.path.abspath(__file__))
_project_root = os.path.dirname(_current_file_dir)
_sam2_repo_dir = os.path.join(_project_root, "sam2")
# Add sam2 directory to sys.path if not already there
abs_sam2_dir = os.path.abspath(_sam2_repo_dir)
if abs_sam2_dir not in sys.path:
sys.path.insert(0, abs_sam2_dir)
from sam2.sam2_image_predictor import SAM2ImagePredictor
from sam2.automatic_mask_generator import SAM2AutomaticMaskGenerator
from model.utils import mask_to_polygon
# Hugging Face model ID for SAM2.1 Hiera Large model
# Available models: facebook/sam2.1-hiera-tiny, facebook/sam2.1-hiera-small,
# facebook/sam2.1-hiera-base, facebook/sam2.1-hiera-large
HUGGINGFACE_MODEL_ID = "facebook/sam2.1-hiera-large"
device = "cuda" if torch.cuda.is_available() else "cpu"
# Initialize SAM2 model (will be loaded on first use)
predictor = None
mask_generator = None
def initialize_sam():
"""
Initialize SAM2 Large model from Hugging Face if not already loaded.
Returns:
SAM2ImagePredictor instance
Raises:
ImportError: If sam2 or huggingface_hub is not installed
RuntimeError: If model fails to load from Hugging Face
"""
global predictor
if predictor is None:
try:
# Load model directly from Hugging Face Hub
# This will automatically download the model if not cached locally
predictor = SAM2ImagePredictor.from_pretrained(
HUGGINGFACE_MODEL_ID,
device=device
)
except ImportError as e:
raise ImportError(
f"Failed to import required modules. Please ensure 'sam2' and 'huggingface_hub' are installed. "
f"Install with: pip install segment-anything huggingface_hub. "
f"Error: {str(e)}"
)
except Exception as e:
error_msg = str(e)
raise RuntimeError(
f"Failed to load SAM2 model from Hugging Face ({HUGGINGFACE_MODEL_ID}). "
f"Please check your internet connection and ensure the model ID is correct. "
f"Error: {error_msg}"
)
return predictor
def initialize_mask_generator(points_per_side=32, points_per_batch=64):
"""
Initialize SAM2 Automatic Mask Generator from Hugging Face if not already loaded.
Configured with memory-efficient parameters for CPU usage.
Args:
points_per_side: Number of points per side of the image grid (default: 32, lower = less memory)
points_per_batch: Number of points to process in each batch (default: 64, lower = less memory)
Returns:
SAM2AutomaticMaskGenerator instance
Raises:
ImportError: If sam2 or huggingface_hub is not installed
RuntimeError: If model fails to load from Hugging Face
"""
global mask_generator
if mask_generator is None:
try:
# Try to load with configuration parameters first
try:
mask_generator = SAM2AutomaticMaskGenerator.from_pretrained(
HUGGINGFACE_MODEL_ID,
device=device,
points_per_side=points_per_side,
points_per_batch=points_per_batch,
pred_iou_thresh=0.88,
stability_score_thresh=0.95,
crop_n_layers=1,
crop_n_points_downscale_factor=2,
min_mask_region_area=100,
)
except TypeError:
# If parameters are not accepted by from_pretrained, load without them
# and configure manually if possible
mask_generator = SAM2AutomaticMaskGenerator.from_pretrained(
HUGGINGFACE_MODEL_ID,
device=device
)
# Try to set parameters if the generator supports it
if hasattr(mask_generator, 'points_per_side'):
mask_generator.points_per_side = points_per_side
if hasattr(mask_generator, 'points_per_batch'):
mask_generator.points_per_batch = points_per_batch
except ImportError as e:
raise ImportError(
f"Failed to import required modules. Please ensure 'sam2' and 'huggingface_hub' are installed. "
f"Install with: pip install segment-anything huggingface_hub. "
f"Error: {str(e)}"
)
except Exception as e:
error_msg = str(e)
raise RuntimeError(
f"Failed to load SAM2 Automatic Mask Generator from Hugging Face ({HUGGINGFACE_MODEL_ID}). "
f"Please check your internet connection and ensure the model ID is correct. "
f"Error: {error_msg}"
)
return mask_generator
def resize_image_if_needed(image_rgb, max_dimension=1024):
"""
Resize image if it exceeds max_dimension to reduce memory usage.
Maintains aspect ratio.
Args:
image_rgb: numpy array (H, W, 3) in RGB format
max_dimension: Maximum dimension (width or height) in pixels (default: 1024)
Returns:
resized_image: Resized numpy array
scale_factor: Tuple (scale_x, scale_y) - how much the image was scaled down
"""
h, w = image_rgb.shape[:2]
max_current = max(h, w)
if max_current <= max_dimension:
return image_rgb, (1.0, 1.0)
# Calculate new dimensions maintaining aspect ratio
if h > w:
new_h = max_dimension
new_w = int(w * (max_dimension / h))
else:
new_w = max_dimension
new_h = int(h * (max_dimension / w))
# Resize image
resized = cv2.resize(image_rgb, (new_w, new_h), interpolation=cv2.INTER_LINEAR)
scale_x = w / new_w if new_w > 0 else 1.0
scale_y = h / new_h if new_h > 0 else 1.0
return resized, (scale_x, scale_y)
def calculate_memory_usage():
"""
Calculate current memory usage of the process.
Returns:
dict: Memory usage information in MB
"""
process = psutil.Process(os.getpid())
mem_info = process.memory_info()
return {
"rss_mb": mem_info.rss / (1024 * 1024), # Resident Set Size in MB
"vms_mb": mem_info.vms / (1024 * 1024), # Virtual Memory Size in MB
"percent": process.memory_percent() # Percentage of system memory
}
def estimate_image_memory(image_rgb):
"""
Estimate memory required for processing an image.
Args:
image_rgb: numpy array (H, W, 3) in RGB format
Returns:
dict: Estimated memory usage in MB
"""
h, w = image_rgb.shape[:2]
# Estimate memory for:
# - Input image: H * W * 3 * 4 bytes (float32)
# - Feature maps: ~H * W * 256 * 4 bytes (typical SAM2 feature size)
# - Masks: ~H * W * 100 * 1 byte (assuming ~100 masks)
# - Model weights: ~2-4 GB (loaded once)
image_memory_mb = (h * w * 3 * 4) / (1024 * 1024)
feature_memory_mb = (h * w * 256 * 4) / (1024 * 1024)
masks_memory_mb = (h * w * 100 * 1) / (1024 * 1024)
total_estimated_mb = image_memory_mb + feature_memory_mb + masks_memory_mb
return {
"image_mb": image_memory_mb,
"features_mb": feature_memory_mb,
"masks_mb": masks_memory_mb,
"total_estimated_mb": total_estimated_mb,
"image_size": f"{w}x{h}"
}
def generate_all_masks(image_rgb, image_size=None, min_area=100, min_confidence=0.5, max_image_dimension=1024, points_per_side=32, points_per_batch=64):
"""
Generate all possible object masks in an image using SAM2 Automatic Mask Generator.
Automatically detects and segments all objects without requiring prompts.
Optimized for CPU usage with image resizing and memory-efficient parameters.
Args:
image_rgb: numpy array (H, W, 3) in RGB format
image_size: Optional dict with "width" and "height" for coordinate scaling
min_area: Minimum mask area to filter out small/noisy masks (default: 100)
min_confidence: Minimum confidence score to filter masks (default: 0.5)
max_image_dimension: Maximum dimension (width or height) in pixels before resizing (default: 1024)
points_per_side: Number of points per side of the image grid (default: 32, lower = less memory)
points_per_batch: Number of points to process in each batch (default: 64, lower = less memory)
Returns:
dict: Contains:
- masks: List of dicts, each containing:
- polygon: flattened coordinates array [x1, y1, x2, y2, ...]
- confidence: float confidence score
- area: int mask area in pixels
- memory_info: Memory usage information
- was_resized: Whether the image was resized
- original_size: Original image dimensions
- processed_size: Processed image dimensions
"""
# Get memory before processing
memory_before = calculate_memory_usage()
# Store original dimensions
original_h, original_w = image_rgb.shape[:2]
original_size = (original_w, original_h)
# Resize image if needed to reduce memory usage
processed_image, resize_scale = resize_image_if_needed(image_rgb, max_dimension=max_image_dimension)
was_resized = resize_scale[0] != 1.0 or resize_scale[1] != 1.0
processed_h, processed_w = processed_image.shape[:2]
processed_size = (processed_w, processed_h)
# Estimate memory requirements
memory_estimate = estimate_image_memory(processed_image)
# Initialize generator with memory-efficient parameters
generator = initialize_mask_generator(points_per_side=points_per_side, points_per_batch=points_per_batch)
# Calculate scale factors for coordinate scaling
scale_x, scale_y = 1.0, 1.0
if image_size is not None:
if isinstance(image_size, dict):
display_w = float(image_size.get("width", original_w))
display_h = float(image_size.get("height", original_h))
else:
display_w, display_h = float(image_size[0]), float(image_size[1])
# Calculate scale factors: how much to scale FROM display TO processed image
# Account for both resize_scale and image_size scale
scale_x = (processed_w / display_w) * resize_scale[0] if display_w > 0 else resize_scale[0]
scale_y = (processed_h / display_h) * resize_scale[1] if display_h > 0 else resize_scale[1]
else:
# Only account for resize scale
scale_x = resize_scale[0]
scale_y = resize_scale[1]
# Generate all masks automatically
masks = generator.generate(processed_image)
# Get memory after processing
memory_after = calculate_memory_usage()
# Process each mask and convert to polygon format
result_masks = []
for mask_data in masks:
# Extract mask information
mask = mask_data["segmentation"] # Boolean mask
confidence = float(mask_data.get("stability_score", mask_data.get("predicted_iou", 0.0)))
area = int(mask_data.get("area", 0))
# Filter masks by area and confidence
if area < min_area or confidence < min_confidence:
continue
# Convert boolean mask to uint8 format for polygon conversion
mask_uint8 = (mask.astype(np.uint8) * 255)
# Convert mask to polygon using existing utility function
# Note: scale_factors are inverted here because mask_to_polygon expects
# scaling FROM processed TO display, but we calculated FROM display TO processed
polygon = mask_to_polygon(mask_uint8, (1.0/scale_x if scale_x != 0 else 1.0, 1.0/scale_y if scale_y != 0 else 1.0))
if polygon and len(polygon) >= 6: # At least 3 points (x, y pairs)
result_masks.append({
"polygon": polygon,
"confidence": confidence,
"area": area
})
# Sort by area (largest first) for better usability
result_masks.sort(key=lambda x: x["area"], reverse=True)
return {
"masks": result_masks,
"memory_info": {
"before_mb": memory_before["rss_mb"],
"after_mb": memory_after["rss_mb"],
"peak_mb": memory_after["rss_mb"],
"estimated_mb": memory_estimate["total_estimated_mb"],
"memory_used_mb": memory_after["rss_mb"] - memory_before["rss_mb"]
},
"was_resized": was_resized,
"original_size": original_size,
"processed_size": processed_size,
"resize_scale": resize_scale
}
def predict_polygon(image_rgb, bbox, image_size=None):
"""
Predict polygon mask using SAM2 with bbox as prompt (CVAT-style).
Bbox is used to identify the object, not constrain it.
Args:
image_rgb: numpy array (H, W, 3) in RGB format
bbox: dict with keys "x", "y", "width", "height" OR list [x, y, w, h]
image_size: Optional dict with "width" and "height" for coordinate scaling
Returns:
mask: binary mask (numpy array) - full object shape, NOT clipped to bbox
confidence: float confidence score
"""
predictor = initialize_sam()
predictor.set_image(image_rgb)
# Handle both dict and list formats for bbox
if isinstance(bbox, dict):
x = float(bbox["x"])
y = float(bbox["y"])
bbox_w = float(bbox["width"])
bbox_h = float(bbox["height"])
else: # list format [x, y, w, h]
x, y, bbox_w, bbox_h = [float(v) for v in bbox]
# Scale bbox coordinates if image_size is provided (CVAT-style)
# image_size represents the display size (like CVAT UI), bbox is relative to display size
# We need to scale bbox FROM display size TO original image size for prediction
scale_x, scale_y = 1.0, 1.0
original_h, original_w = image_rgb.shape[:2]
if image_size is not None:
if isinstance(image_size, dict):
display_w = float(image_size.get("width", original_w))
display_h = float(image_size.get("height", original_h))
else:
display_w, display_h = float(image_size[0]), float(image_size[1])
# Calculate scale factors: how much to scale FROM display TO original
scale_x = original_w / display_w if display_w > 0 else 1.0
scale_y = original_h / display_h if display_h > 0 else 1.0
# Scale bbox coordinates FROM display size TO original image size
x = x * scale_x
y = y * scale_y
bbox_w = bbox_w * scale_x
bbox_h = bbox_h * scale_y
# Convert to [x1, y1, x2, y2] format for SAM2
box = np.array([x, y, x + bbox_w, y + bbox_h], dtype=np.float32)
# Use multiple point prompts (CVAT-style) for better object identification
# Center point + corner points help SAM2 capture the full object
center_x = x + bbox_w / 2.0
center_y = y + bbox_h / 2.0
# Add multiple foreground points: center + corners (helps capture full object)
point_coords = np.array([
[center_x, center_y], # Center
[x + bbox_w * 0.25, y + bbox_h * 0.25], # Top-left quarter
[x + bbox_w * 0.75, y + bbox_h * 0.25], # Top-right quarter
[x + bbox_w * 0.25, y + bbox_h * 0.75], # Bottom-left quarter
[x + bbox_w * 0.75, y + bbox_h * 0.75], # Bottom-right quarter
], dtype=np.float32)
point_labels = np.array([1, 1, 1, 1, 1], dtype=np.int32) # All foreground points
# Get multiple masks and select the best one (like CVAT)
masks, scores, _ = predictor.predict(
box=box,
point_coords=point_coords,
point_labels=point_labels,
multimask_output=True # Get multiple masks to choose the best fit
)
# Select the best mask using multiple criteria (CVAT-style)
# Consider both confidence score AND coverage of bbox area
best_mask_idx = 0
best_score_combined = 0.0
bbox_area = bbox_w * bbox_h
for idx, (mask, score) in enumerate(zip(masks, scores)):
# Calculate mask area within bbox region
mask_binary = mask.astype(np.uint8) * 255
# Get mask area in bbox region
x1_int = max(0, int(x))
y1_int = max(0, int(y))
x2_int = min(mask.shape[1], int(x + bbox_w))
y2_int = min(mask.shape[0], int(y + bbox_h))
mask_bbox_region = mask_binary[y1_int:y2_int, x1_int:x2_int]
mask_area_in_bbox = np.sum(mask_bbox_region > 0)
# Calculate coverage ratio (how much of bbox is covered by mask)
coverage_ratio = mask_area_in_bbox / bbox_area if bbox_area > 0 else 0
# Combined score: confidence (60%) + coverage (40%)
# Higher coverage ensures we capture the full object
score_combined = float(score) * 0.6 + coverage_ratio * 0.4
if score_combined > best_score_combined:
best_score_combined = score_combined
best_mask_idx = idx
best_mask = masks[best_mask_idx]
best_score = scores[best_mask_idx]
# Post-process mask to fill holes and improve completeness (CVAT-style)
mask = (best_mask * 255).astype("uint8") if best_mask.dtype == bool else (best_mask * 255).astype("uint8")
# Fill small holes in the mask (CVAT-style post-processing)
# This helps capture parts that might be missing
mask_filled = cv2.morphologyEx(mask, cv2.MORPH_CLOSE,
cv2.getStructuringElement(cv2.MORPH_ELLIPSE, (5, 5)))
# Fill holes using flood fill
h, w = mask_filled.shape
mask_floodfill = mask_filled.copy()
cv2.floodFill(mask_floodfill, None, (0, 0), 255)
mask_floodfill_inv = cv2.bitwise_not(mask_floodfill)
mask_filled = cv2.bitwise_or(mask_filled, mask_floodfill_inv)
# Use the filled mask for better completeness
mask = mask_filled
# Safely extract confidence score (handle numpy array/scalar)
score_arr = np.asarray(best_score).flatten()
confidence = float(score_arr[0])
return mask, confidence, (scale_x, scale_y)
def predict_polygon_from_point(image_rgb, point, image_size=None):
"""
Predict polygon mask using SAM2 with a point click as prompt.
The point identifies the object to segment.
Args:
image_rgb: numpy array (H, W, 3) in RGB format
point: dict with keys "x", "y" OR list [x, y] - the clicked point coordinate
image_size: Optional dict with "width" and "height" for coordinate scaling
Returns:
mask: binary mask (numpy array) - full object shape
confidence: float confidence score
scale_factors: tuple (scale_x, scale_y) for coordinate scaling
"""
predictor = initialize_sam()
predictor.set_image(image_rgb)
# Handle both dict and list formats for point
if isinstance(point, dict):
point_x = float(point["x"])
point_y = float(point["y"])
else: # list format [x, y]
point_x, point_y = [float(v) for v in point]
# Scale point coordinates if image_size is provided (CVAT-style)
# image_size represents the display size (like CVAT UI), point is relative to display size
# We need to scale point FROM display size TO original image size for prediction
scale_x, scale_y = 1.0, 1.0
original_h, original_w = image_rgb.shape[:2]
if image_size is not None:
if isinstance(image_size, dict):
display_w = float(image_size.get("width", original_w))
display_h = float(image_size.get("height", original_h))
else:
display_w, display_h = float(image_size[0]), float(image_size[1])
# Calculate scale factors: how much to scale FROM display TO original
scale_x = original_w / display_w if display_w > 0 else 1.0
scale_y = original_h / display_h if display_h > 0 else 1.0
# Scale point coordinates FROM display size TO original image size
point_x = point_x * scale_x
point_y = point_y * scale_y
# Prepare point coordinates for SAM2
# point_coords shape: (1, 2) - single point
point_coords = np.array([[point_x, point_y]], dtype=np.float32)
point_labels = np.array([1], dtype=np.int32) # 1 = foreground point
# Get multiple masks and select the best one
masks, scores, _ = predictor.predict(
point_coords=point_coords,
point_labels=point_labels,
multimask_output=True # Get multiple masks to choose the best fit
)
# Select the best mask based on confidence score
best_mask_idx = np.argmax(scores)
best_mask = masks[best_mask_idx]
best_score = scores[best_mask_idx]
# Post-process mask to fill holes and improve completeness (CVAT-style)
mask = (best_mask * 255).astype("uint8") if best_mask.dtype == bool else (best_mask * 255).astype("uint8")
# Fill small holes in the mask (CVAT-style post-processing)
# This helps capture parts that might be missing
mask_filled = cv2.morphologyEx(mask, cv2.MORPH_CLOSE,
cv2.getStructuringElement(cv2.MORPH_ELLIPSE, (5, 5)))
# Fill holes using flood fill
h, w = mask_filled.shape
mask_floodfill = mask_filled.copy()
cv2.floodFill(mask_floodfill, None, (0, 0), 255)
mask_floodfill_inv = cv2.bitwise_not(mask_floodfill)
mask_filled = cv2.bitwise_or(mask_filled, mask_floodfill_inv)
# Use the filled mask for better completeness
mask = mask_filled
# Safely extract confidence score (handle numpy array/scalar)
score_arr = np.asarray(best_score).flatten()
confidence = float(score_arr[0])
return mask, confidence, (scale_x, scale_y)
|