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use warnings; |
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use strict; |
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die("ERROR: syntax: run-command-on-multiple-refsets.perl cmd in out") |
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unless scalar @ARGV == 3; |
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my ($cmd,$in,$out) = @ARGV; |
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die("ERROR: attempt to run on multiple references, but there is only one") |
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if -e $in && (! -e "$in.ref0" || -e $in."0"); |
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die("ERROR: did not find reference '$in.ref0' or '${in}0'") |
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unless (-e "$in.ref0" || -e $in."0"); |
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for(my $i=0;-e "$in.ref$i" || -e $in.$i;$i++) { |
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my $single_cmd = $cmd; |
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if (! -e "$in.ref$i") { |
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$single_cmd =~ s/mref-input-file/$in$i/g; |
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} |
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else { |
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$single_cmd =~ s/mref-input-file/$in.ref$i/g; |
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} |
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$single_cmd =~ s/mref-output-file/$out.ref$i/g; |
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system($single_cmd); |
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} |
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