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3d1e14c 2660792 3d1e14c 2660792 3d1e14c 2660792 3d1e14c 2660792 3d1e14c 2660792 3d1e14c 2660792 3d1e14c 2660792 50d164d 3d1e14c 2660792 3d1e14c 2660792 3d1e14c 2660792 3d1e14c 5a648bb 3d1e14c 2660792 3d1e14c 2660792 3d1e14c 2660792 3d1e14c 2660792 3d1e14c 2660792 3d1e14c 2660792 3d1e14c 2660792 3d1e14c 2660792 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 | """FastAPI bridge over ehragent.Agent — strict BYOK, with optional augmentations.
Endpoints
---------
GET /api/health → liveness
GET /api/config → list of databases + per-DB augmentation availability
POST /api/ask → run the agent. See ``AskRequest`` for fields.
BYOK
----
Each request carries its own OpenAI API key in the ``X-OpenAI-Api-Key``
header. The server never reads ``OPENAI_API_KEY`` from its environment.
For requests using a custom (local) model where the key is irrelevant,
the header may be empty — the agent will then receive ``api_key="EMPTY"``,
which OpenAI-compatible servers (vLLM, SGLang, …) accept.
Memory bank retrieval, however, ALWAYS goes to OpenAI for the embedding
call (the prebuilt index uses ``text-embedding-3-small``). When
``use_memory_bank`` is true the request must therefore include a real
OpenAI key.
Multi-DB
--------
``EHRAGENT_DATABASES`` is a JSON object mapping ``db_id`` to a config:
{
"mimic_iii": {
"path": "/data/mimic_iii.sqlite",
"label": "MIMIC-III",
"handbook": "/data/handbook/mimic_iii_handbook.md",
"memory_bank": "/data/memory_bank/mimic_iii"
}
}
``handbook`` and ``memory_bank`` are optional. Per request the caller
opts in to either via ``use_handbook`` / ``use_memory_bank``.
"""
from __future__ import annotations
import json
import os
from pathlib import Path
from dotenv import load_dotenv
from fastapi import FastAPI, Header, HTTPException
from fastapi.middleware.cors import CORSMiddleware
from openai import OpenAI
from pydantic import BaseModel, Field
from ehragent import Agent
from ehragent.memory_bank import MemoryBank
# Local-dev convenience: load .env so DB paths and CORS origins can sit there.
# Note: OPENAI_API_KEY is intentionally NOT consumed below.
load_dotenv()
try:
_project_env = Path(__file__).resolve().parents[2] / ".env"
if _project_env.exists():
load_dotenv(dotenv_path=_project_env, override=False)
except IndexError:
pass
DEFAULT_MODEL = os.getenv("EHRAGENT_MODEL", "gpt-5-mini")
DEFAULT_BASE_URL = os.getenv("EHRAGENT_BASE_URL") or None
MAX_TURNS = int(os.getenv("EHRAGENT_MAX_TURNS", "20"))
LOG_DIR = os.getenv("EHRAGENT_LOG_DIR") or None
REASONING_EFFORT = os.getenv("EHRAGENT_REASONING_EFFORT") or None
CORS_ORIGINS = [
o.strip()
for o in os.getenv("EHRAGENT_CORS_ORIGINS", "*").split(",")
if o.strip()
]
def _parse_databases() -> dict[str, dict]:
raw = os.getenv("EHRAGENT_DATABASES")
if not raw:
single = os.getenv("EHRAGENT_DB_PATH")
if single:
return {"default": {"path": single, "label": Path(single).stem}}
return {}
parsed = json.loads(raw)
if not isinstance(parsed, dict):
raise RuntimeError("EHRAGENT_DATABASES must be a JSON object.")
return parsed
DATABASES_CONFIG = _parse_databases()
# Validate paths at startup; missing files don't crash the server, but the
# augmentation is reported as unavailable.
DB_STATUS: dict[str, str | None] = {}
for db_id, cfg in DATABASES_CONFIG.items():
p = Path(cfg.get("path", ""))
DB_STATUS[db_id] = None if p.exists() else f"file not found: {p}"
def _has_handbook(cfg: dict) -> bool:
hb = cfg.get("handbook")
return bool(hb) and Path(hb).exists()
def _has_memory_bank(cfg: dict) -> bool:
mb = cfg.get("memory_bank")
return bool(mb) and Path(mb).exists()
def _build_memory_bank(path: str, *, openai_api_key: str) -> MemoryBank:
"""Load the prebuilt bank; force embeddings to use the caller's key.
MemoryBank.__init__ instantiates ``OpenAI()`` with no args, which raises
on the Space because OPENAI_API_KEY is not in the env. We bracket the
constructor with a temporary env mutation, then replace the client.
The mutation is safe because no coroutine yields between the set and
the constructor (single-threaded asyncio).
"""
prev = os.environ.get("OPENAI_API_KEY")
os.environ["OPENAI_API_KEY"] = openai_api_key
try:
bank = MemoryBank(store_dir=path)
finally:
if prev is None:
os.environ.pop("OPENAI_API_KEY", None)
else:
os.environ["OPENAI_API_KEY"] = prev
bank._client = OpenAI(api_key=openai_api_key) # noqa: SLF001
return bank
def _build_agent(
cfg: dict,
*,
api_key: str,
base_url_override: str | None,
model_override: str | None,
use_handbook: bool,
use_memory_bank: bool,
openai_key_for_embeddings: str | None,
) -> Agent:
handbook_path = cfg.get("handbook") if use_handbook and _has_handbook(cfg) else None
memory_bank: MemoryBank | None = None
if use_memory_bank and _has_memory_bank(cfg):
if not openai_key_for_embeddings:
raise HTTPException(
status_code=400,
detail=(
"Memory bank retrieval needs an OpenAI key for embeddings. "
"Either provide one in X-OpenAI-Api-Key or disable use_memory_bank."
),
)
memory_bank = _build_memory_bank(
cfg["memory_bank"], openai_api_key=openai_key_for_embeddings
)
return Agent(
db_path=str(Path(cfg["path"])),
model=model_override or cfg.get("model", DEFAULT_MODEL),
base_url=base_url_override or cfg.get("base_url", DEFAULT_BASE_URL),
api_key=api_key,
handbook=handbook_path,
memory_bank=memory_bank,
max_turns=cfg.get("max_turns", MAX_TURNS),
reasoning_effort=cfg.get("reasoning_effort", REASONING_EFFORT),
log_dir=LOG_DIR,
)
app = FastAPI(title="EHRAgent WebUI Backend")
app.add_middleware(
CORSMiddleware,
allow_origins=CORS_ORIGINS,
allow_methods=["GET", "POST", "OPTIONS"],
allow_headers=["*"],
)
class AskRequest(BaseModel):
question: str = Field(..., min_length=1)
db: str | None = None
question_id: str | None = None
base_url: str | None = None
model: str | None = None
use_handbook: bool = False
use_memory_bank: bool = False
@app.get("/api/health")
async def health() -> dict:
return {"status": "ok"}
@app.get("/api/config")
async def config() -> dict:
return {
"model": DEFAULT_MODEL,
"base_url": DEFAULT_BASE_URL,
"max_turns": MAX_TURNS,
"byok_required": True,
"databases": [
{
"id": db_id,
"label": cfg.get("label", db_id),
"ready": DB_STATUS[db_id] is None,
"error": DB_STATUS[db_id],
"has_handbook": _has_handbook(cfg),
"has_memory_bank": _has_memory_bank(cfg),
}
for db_id, cfg in DATABASES_CONFIG.items()
],
}
@app.post("/api/ask")
async def ask(
req: AskRequest,
x_openai_api_key: str | None = Header(default=None, alias="X-OpenAI-Api-Key"),
) -> dict:
if not DATABASES_CONFIG:
raise HTTPException(
status_code=500,
detail="No databases configured. Set EHRAGENT_DATABASES on the server.",
)
db_id = req.db or next(iter(DATABASES_CONFIG))
cfg = DATABASES_CONFIG.get(db_id)
if cfg is None:
raise HTTPException(
status_code=400,
detail=f"Unknown db: {db_id!r}. Available: {list(DATABASES_CONFIG)}",
)
if DB_STATUS[db_id] is not None:
raise HTTPException(
status_code=503,
detail=f"db {db_id!r}: {DB_STATUS[db_id]}",
)
using_local = bool((req.base_url or "").strip())
raw_key = (x_openai_api_key or "").strip()
if not raw_key and not using_local:
raise HTTPException(
status_code=401,
detail=(
"OpenAI API key required. Send it via the X-OpenAI-Api-Key "
"header. The server does not store keys."
),
)
# Inference key: dummy when only a local model is in play.
inference_key = raw_key or "EMPTY"
# Embedding key (memory bank): only OpenAI works, must be a real key.
embedding_key = raw_key or None
try:
agent = _build_agent(
cfg,
api_key=inference_key,
base_url_override=(req.base_url or "").strip() or None,
model_override=(req.model or "").strip() or None,
use_handbook=req.use_handbook,
use_memory_bank=req.use_memory_bank,
openai_key_for_embeddings=embedding_key,
)
except HTTPException:
raise
except Exception as e: # noqa: BLE001
raise HTTPException(status_code=500, detail=str(e))
return await agent.arun(req.question, question_id=req.question_id)
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