Merge pull request #15 from moriyalab/fix

lab_tools/spectrogram.py

@@ -44,8 +44,8 @@ def stft_plot_spectrogram(data, Fs, N, freq_limit=None):
     amp = np.abs(Zxx)
     amp[amp == 0] = np.finfo(float).eps
     fig, ax = plt.subplots(figsize=(12, 6))
-    spectrogram = ax.pcolormesh(times, freqs, np.log10(amp), shading="auto", vmin=0, vmax=5)
-    fig.colorbar(spectrogram, ax=ax, orientation="vertical").set_label("Amplitude (dB)")
+    spectrogram = ax.pcolormesh(times, freqs, amp, shading="auto", vmin=0, vmax=5)
+    fig.colorbar(spectrogram, ax=ax, orientation="vertical").set_label("Amplitude")
     ax.set_xlabel("Time [s]")
     ax.set_ylabel("Frequency [Hz]")
     if freq_limit:

release_launch.sh

@@ -0,0 +1,37 @@
+#!/bin/bash
+
+# https://qiita.com/k_ikasumipowder/items/5e71208b7c7ae3e4fe7c
+
+ROOT="$( cd "$( dirname "${BASH_SOURCE[0]}" )" >/dev/null 2>&1 && pwd )"
+
+# Prevent running as root.
+if [[ $(id -u) -eq 0 ]]; then
+    echo "This script cannot be executed with root privileges."
+    echo "Please re-run without sudo and follow instructions to configure docker for non-root user if needed."
+    exit 1
+fi
+
+# Check if user can run docker without root.
+RE="\<docker\>"
+if [[ ! $(groups $USER) =~ $RE ]]; then
+    echo "User |$USER| is not a member of the 'docker' group and cannot run docker commands without sudo."
+    echo "Run 'sudo usermod -aG docker \$USER && newgrp docker' to add user to 'docker' group, then re-run this script."
+    echo "See: https://docs.docker.com/engine/install/linux-postinstall/"
+    exit 1
+fi
+
+# Check if able to run docker commands.
+if [[ -z "$(docker ps)" ]] ;  then
+    echo "Unable to run docker commands. If you have recently added |$USER| to 'docker' group, you may need to log out and log back in for it to take effect."
+    echo "Otherwise, please check your Docker installation."
+    exit 1
+fi
+
+PLATFORM="$(uname -m)"
+
+if [ $PLATFORM = "x86_64" ]; then
+    docker pull ghcr.io/moriyalab/lab_tool:latest
+    docker run --rm -p 7860:7860 ghcr.io/moriyalab/lab_tool:latest
+else
+    echo "Not Support Platform. Only support x86."
+fi

run_dev_env.sh

@@ -31,7 +31,7 @@ PLATFORM="$(uname -m)"
 
 if [ $PLATFORM = "x86_64" ]; then
     echo "x86"
-    docker pull ghcr.io/moriyalab/lab_tool:latest
+    docker pull ghcr.io/moriyalab/lab_tool_dev:latest
     docker run -it --rm -v $ROOT:/app -w /app --network host ghcr.io/moriyalab/lab_tool_dev:latest /bin/bash
 else
     echo "Not Support Platform. Only support x86."