Fix OAuth loading indicator to persist during callback processing

Add loading indicator for OAuth sign in button

Fix OAuth infinite redirect loop

Add environment variable diagnostic logging to troubleshoot HF Spaces secrets

Add debug logging for Supabase environment variables

Fix OAuth infinite redirect loop

Fix OAuth callback to wait for Shiny connection

Add once=TRUE to OAuth observer to prevent multiple executions

Fix OAuth button infinite loop and add debug logging

Fix login button to use Shiny actionButton instead of raw HTML

Fix OAuth redirect URL to use root path

Fix login overlay timing and OAuth redirect

Add minimal authentication UI for user quota display

Add authentication, token quota tracking, and comprehensive usage logging

Add documentation button to chat panel header

Fix Search TF Scores functionality and increase chat panel width

www/networkanalysis/comp_log2FC_RegulatedData_TRMTEXterm.xlsx,www/old files/log2FC_RegulatedData_TRMTEXterm.xlsx,www/paper.pdf: convert to Git LFS

www/networkanalysis/comp_log2FC_RegulatedData_TRMTEXterm.xlsx,www/old files/log2FC_RegulatedData_TRMTEXterm.xlsx,www/paper.pdf: convert to Git LFS

Merge branch 'feature/literature-search-button'

Update Excel files before merge

Update generation agent with literature system changes

Replace literature toggle with 4-button consultation system

Fix infinite loop bug in literature search system

Fix TF query response formatting and workflow transformation

remove old documentations

add first query warning

add disclaimer

append url for literature review

ask users about which source to reference

temp update

fix literature search

fix thinking box

fix document

improve paper reading

fix generation agent

dummy commit to trigger rebuild

Re-add paper.pdf via Git LFS

Track paper.pdf with Git LFS

increase retry attempt

add paper reading, improve retrying

update dockerfile

update readme

improve animation, scrolling, add caching, improve agent supervising

add typing animation

make sidebar adjustable

make sidebar adjustable

make sidebar adjustable

make sidebar adjustable

Enhance error handling to capture more detailed API error information

Enhance error handling and logging in agent initialization