Bartolomé Ortiz
fix Dockerfile name for HF
02f7ac2
import dash
from dash import dcc, html, Input, Output, State, ctx
import pandas as pd
import plotly.express as px
from dash.dependencies import ALL
# Load dataset
df = pd.read_csv("data/moths_combined.csv")
# df['country'] = "UK"
# Fields to evaluate completeness
description_fields = [
'main colors', 'pattern description', 'details colors',
'antennae description', 'antennae colors',
'head color', 'abdomen color',
'forewings description', 'forewing colors',
'hindwing description', 'hindwing colors'
]
# Compute completeness
def compute_completeness(row):
filled = sum([pd.notna(row[col]) and str(row[col]).strip() != "" for col in description_fields])
return filled / len(description_fields)
df["completeness_score"] = df.apply(compute_completeness, axis=1)
def classify(score):
if score >= 0.8:
return "High"
elif score >= 0.6:
return "Medium"
else:
return "Low"
df["completeness_label"] = df["completeness_score"].apply(classify)
# Country-level completeness
def completeness_color(score):
if score >= 0.8:
return 'green'
elif score >= 0.6:
return 'orange'
else:
return 'red'
country_completeness = df.groupby('country')['completeness_score'].mean().reset_index()
country_completeness['color'] = country_completeness['completeness_score'].apply(completeness_color)
# Dash app
app = dash.Dash(__name__, suppress_callback_exceptions=True)
server = app.server
app.title = "Moth Explorer"
app.layout = html.Div([
html.Div([
html.H1("🦋 Moth Description Explorer 🦋", style={
'textAlign': 'center',
'padding': '20px 0',
'color': '#1c3b6f'
}),
html.P(
"Explore the morphological completeness of moth species, from order to species level. "
"Click on the sunburst chart to view detailed color and wing pattern information.",
style={
'textAlign': 'center',
'fontSize': '16px',
'maxWidth': '900px',
'margin': '0 auto',
'paddingBottom': '20px',
'color': '#333'
}
),
dcc.Store(id='selected-country', data=None),
html.Div(id='country-boxes', style={
'display': 'flex',
'flexWrap': 'wrap',
'gap': '10px',
'justifyContent': 'center',
'marginBottom': '20px'
})
], style={'fontFamily': '"Segoe UI", Roboto, Inter, sans-serif'}),
html.Div([
html.Div([
dcc.Graph(id='sunburst-plot', config={'scrollZoom': True})
], style={'flex': '1', 'padding': '10px'}),
html.Div(id='info-box', style={
'flex': '1',
'padding': '20px',
'fontSize': '16px',
'lineHeight': '1.5',
'overflowY': 'auto'
})
], style={
'display': 'flex',
'flexDirection': 'row',
'flexWrap': 'nowrap',
'height': '80vh',
'gap': '20px',
'fontFamily': '"Segoe UI", Roboto, Inter, sans-serif'
}),
html.Div([
html.Img(src='/assets/images/logo1.png', style={'height': '60px', 'margin': '10px'}),
html.Img(src='/assets/images/logo2.png', style={'height': '60px', 'margin': '10px'})
], style={
'textAlign': 'center',
'padding': '20px 0'
})
])
# Country selection boxes
@app.callback(
Output('country-boxes', 'children'),
Input('selected-country', 'data')
)
def render_country_boxes(selected_country):
boxes = []
for _, row in country_completeness.iterrows():
border = '3px solid black' if row['country'] == selected_country else '1px solid #ccc'
boxes.append(html.Div(
row['country'],
id={'type': 'country-box', 'index': row['country']},
style={
'backgroundColor': row['color'],
'padding': '10px 15px',
'borderRadius': '8px',
'border': border,
'cursor': 'pointer',
'color': 'white',
'fontWeight': 'bold',
'textAlign': 'center'
}
))
boxes.append(html.Div(
"All Countries",
id={'type': 'country-box', 'index': 'all'},
style={
'backgroundColor': '#999',
'padding': '10px 15px',
'borderRadius': '8px',
'border': '1px solid #ccc',
'cursor': 'pointer',
'color': 'white',
'fontWeight': 'bold',
'textAlign': 'center'
}
))
return boxes
# Handle box click
@app.callback(
Output('selected-country', 'data'),
Input({'type': 'country-box', 'index': ALL}, 'n_clicks'),
State({'type': 'country-box', 'index': ALL}, 'id'),
prevent_initial_call=True
)
def select_country(n_clicks, ids):
if ctx.triggered_id:
return ctx.triggered_id['index']
return dash.no_update
# Sunburst plot
@app.callback(
Output('sunburst-plot', 'figure'),
# Input('sunburst-plot', 'clickData'),
Input('selected-country', 'data')
)
def update_sunburst(selected_country):
print(f"Selected country: {selected_country}")
filtered_df = df[df['country'] == selected_country] if selected_country else df
if selected_country != 'UK' and selected_country != 'Costa Rica':
print('no UK or Costa Rica selected, showing all data')
filtered_df = df # Filter out low completeness
print(f"Filtered data size: {filtered_df.shape}")
fig = px.sunburst(
filtered_df,
path=['order_name', 'family_name', 'genus_name', 'species_name'],
values=None, # Use counts automatically
color='completeness_score',
color_continuous_scale=['red', 'orange', 'green'],
hover_data={'completeness_score': ':.2f'}
)
fig.update_traces(insidetextorientation='radial')
fig.update_layout(margin=dict(t=0, l=0, r=0, b=0))
return fig
# Info panel with table
@app.callback(
Output('info-box', 'children'),
Input('sunburst-plot', 'clickData')
)
def display_info(clickData):
if clickData:
label = clickData['points'][0]['label']
matched = df[df['species_name'] == label]
if not matched.empty:
row = matched.iloc[0]
fields = {
"Main colors": row['main colors'],
"Pattern": row['pattern description'],
"Details colors": row['details colors'],
"Antennae": f"{row['antennae description']} ({row['antennae colors']})",
"Head color": row['head color'],
"Abdomen color": row['abdomen color'],
"Forewings": f"{row['forewings description']} ({row['forewing colors']})",
"Hindwings": f"{row['hindwing description']} ({row['hindwing colors']})"
}
table_rows = [
html.Tr([
html.Th("Field", style={'textAlign': 'left', 'border': '1px solid #ccc', 'padding': '6px', 'backgroundColor': '#f0f0f0'}),
html.Th("Value", style={'textAlign': 'left', 'border': '1px solid #ccc', 'padding': '6px', 'backgroundColor': '#f0f0f0'})
])
]
for key, value in fields.items():
table_rows.append(
html.Tr([
html.Td(key, style={'border': '1px solid #ccc', 'padding': '6px'}),
html.Td(value if value and str(value).strip() else "N/A", style={'border': '1px solid #ccc', 'padding': '6px'})
])
)
return html.Div([
html.H2(f"{row['species_name']}", style={'color': '#1c3b6f'}),
html.P(f"Order: {row['order_name']}"),
html.P(f"Family: {row['family_name']}"),
html.P(f"Genus: {row['genus_name']}"),
html.P(f"Completeness level: {row['completeness_label']}"),
html.Table(table_rows, style={
'borderCollapse': 'collapse',
'width': '100%',
'marginTop': '20px'
})
])
return html.Div("Click on a species to view its descriptions.")
if __name__ == '__main__':
app.run_server(debug=True)